LOC118937288 (LOC106560946)


Basic Information

Item Value
gene id LOC118937288
gene name LOC106560946
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 66338871 ~ 66340622 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036934652.1
ATGGTGCACACTTCTGCGAGTTGTGGAAGCTGTCTTGTTTCTTACCCTGTACGTAAACCACAATCTGTCTATCTCATAGAATGAGAAGTACTACTAGGATATTAATGCTGCTGTGAGCAGAGTGAAGGCATGGTGAGAGTCATAATTCTGGATTTTGGCACTGGAACAGGACTGCTTTCCATGATGGCTGTCACAGCTGGTGCTGGCTACTGCCATGCTGTGGAGGTTTTCAAGCCCATGGCAGATGCTGCTCTCCGAACAGTGAAGATAAATGGCTTCTCCGACAATTTCAAGATCATCAATACACAAGTGACAGTTCGACCAAATGGAGACATGCAGACTCGAGCCAACGTCCTCGTCACAGAGCTGTTTGACACAGAACTGATTGGAGAGGGAGCCTTACCCAGCTATGAATAAGCTCATTTGGCCCCCGAGTGGCTCAGCGggctaaggcattgcatctcagtgctagaggcgtcactacagaccctggttcgattccaggctgtatcacaaccggccgtaattgggggagtcccatagggtggcgcacaattggcccagcgttgttaggGTTTGCCCGGTGTTGTTAGGGTTTtcccggggtaggtcgtcattgtaaataagagttgttttcttaactgacttgcctagttaaatacaaataacattttacatttggtccaggtaagtgtgtttgtgtgtaagaggCAAAGAAAGAGGCAGATATGTATTTCTCCTGCAGGAGGGCTGTGCCCACTAGTTCCACGGTGTATACCCAGCTGGTGGAGTCAGAGCAGTTGTGGAgctatttttactttgtcatgcTCTTATTTGTATGTTTACATGCCTATTATTATGTGAAATTATTCCAACACAGCCACACAATAAGTTATATCTGTCTGTATCCATCCAGGTGTTCAGTTTGGTAAACTGCAATGTTGAAGCAGGTCTTTGAACAAGTGAGTGGAATCATGTAAATAAAGCATTAATTTAGTTGAAATATATTAGCAAACCCTCAATGACTACAGGGTTGCTAGTTGCTAAGGCGTGTATCTCTGTAGGTGCTGGATGCCAACTGCATAAGGGGAGAAGCTTTTCGAGCTGAAAGACGATGGCCAGAGTTTACCCATGATGTTGCACAACGATTTAAATCAAGTCATCgttttagtcaaagtatgataTATTTGGGCATGAAGTGACAAATCCTGAGCTGCCCACTTTTTGCAAATCTATATGAATACGGTGTCTTTTCCTATGTTATGATGTAGACATTATTTTAAGCCTACGTTTCGTTTCAGGACTGGGTTTTGTTTTAATGTTACCACtcaccagcatggcattgtttattaaccaa

Function

NR:

description
PREDICTED: protein arginine N-methyltransferase 7-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036934652.1 True 1357 mRNA 0.44 3 66338871 66340622

Neighbor

gene id symbol gene type direction distance location
LOC110494179 LOC106573656 coding upstream 425 66334512 ~ 66338446 (+)
LOC110494127 LOC106560912 coding upstream 6482 66305919 ~ 66332389 (+)
LOC110494104 LOC106560914 coding upstream 40557 66266850 ~ 66298314 (+)
LOC110494096 LOC106561115 coding upstream 72847 66262594 ~ 66266024 (+)
smpd3 LOC106560916 coding upstream 81899 66223586 ~ 66256972 (+)
LOC110494184 LOC106560911 coding downstream 13785 66354407 ~ 66357907 (+)
LOC110494202 polr2c coding downstream 19181 66359803 ~ 66363985 (+)
LOC110494222 LOC106560908 coding downstream 29168 66369790 ~ 66374755 (+)
LOC110494212 LOC106560906 coding downstream 34510 66375132 ~ 66422337 (+)
adat1 adat1 coding downstream 93858 66434480 ~ 66460877 (+)
LOC110494008 LOC106560923 non-coding upstream 339307 65975745 ~ 66031253 (+)
G172658 NA non-coding upstream 367913 65965873 ~ 65970958 (+)
G172637 NA non-coding upstream 409192 65929364 ~ 65929679 (+)
G172630 NA non-coding upstream 419653 65918913 ~ 65919218 (+)
G172592 NA non-coding upstream 468603 65869329 ~ 65870268 (+)
G173804 NA non-coding downstream 189493 66530115 ~ 66530338 (+)
G173805 NA non-coding downstream 189830 66530452 ~ 66530710 (+)
G173806 NA non-coding downstream 191044 66531666 ~ 66531887 (+)
G173808 NA non-coding downstream 192836 66533458 ~ 66533659 (+)
G172639 NA other upstream 402738 65935596 ~ 65936133 (+)
jph3 jph3 other upstream 697895 65593468 ~ 65648660 (+)
map1lc3b map1lc3b other upstream 802084 65531126 ~ 65536787 (+)
G170150 LOC106560975 other upstream 2460638 63873248 ~ 63878233 (+)
G173938 LOC106573687 other downstream 401198 66741820 ~ 66742213 (+)
LOC110494451 zfpm1 other downstream 614902 66900017 ~ 66995521 (+)
LOC110494472 utp4 other downstream 898268 67232278 ~ 67239902 (+)
hsbp1b LOC106561110 other downstream 1145541 67486128 ~ 67488205 (+)
G176612 LOC100846954 other downstream 2520216 68860838 ~ 68861368 (+)

Expression


Co-expression Network