LOC110494184 (LOC106560911)


Basic Information

Item Value
gene id LOC110494184
gene name LOC106560911
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 66354407 ~ 66357907 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021569009.2
GTGTATTACGTGCTGCGTAAGTGAGTCGCGTAAAAATGATGCGTCTGATGTCTAAATATCTGTTAGCAGCTGGATATGGCGGCGCTGCTACGAGGACTACGAGTTGGAAGGGCCCTGCGGGGTTTTGGCAGCGttccaaaaacatccagtcccCAATGCAATGGCCTGAGACGAGGCTTCCACTGTGCTGCACTTCGTCTTCAGGAGGACAAGGACAAGTCCATCCCTGTCcccccatcctctgctgcatCCTCAACTACAACCTACCACGAGCATTACCAAGCCCACCCATCTAAAAACAACACTGCCACACATATGCAGGAAGCGCCTGCACCCGAAGCTGGTGCTAAGGAGGCTCCCCAGCCCAACACTAGTTATGCAGACCAGAGTGGAGAACAAGGAGAAGAGTATGAAACAGAGGAGCAACTGCAAGCACACATCCTTAACGCTGCACTGGACTTTGTCCAACTACATGGTTGGACTCTTGAGGCCATTTCAGCAGGGGCTGAAACACTGggcctctcagcagcctccagtgGAATGTTCCAGAATGGAGCAGGGGACCTGGTTTTGCACTTCATTGCTCAGTGCAATGCCCAGCTAACAGAGCAAATGGCAGAGCAGCACAACCAGGTCCAACTTGGTCAGGCTGAACCAAAGAAAACTGCAGAGTTTCTTAGAGATGCTGTGGAGACTAGATTGAGGATGTTGACGCCATACATGGATAATTGGCCACAGgctATGAGTATTCTGCTCCTCCCACACAACATCCCAGACAGTCTGAAGCACCTCTCCACCCTGGTGGATGATATCTGGTACTACGCTGGAGACCGTTCCACAGATGTGAGTCGACCTTCTCAGCCTAAGTACCCCTCTCCCCATGTCTTCCTCACCCCCGTTCATCAGGCACCTCATACTATCCGACCAGCCTCTGCGAAGTTGAACTGGTATACGAAACGGGCTGCACTGACAGGGATCTATAACACCACTGAGCTGGTGATGATACAGGACTCCTCAGAAGACTTCCAGGACACCTGGAACTTCCTTGAAAACCGAATCCAGGATATTGTCAACATGGCTGGCGCCGCCAAACAGGCGGCATCTACAGGAGAAGCAGTGGCGCAGGGGCTTTTGGGGGCTGCTGTTACGCTGAAGAATCTAACAGGGATTAACCAAAGACGATGAAAAAAGATGGCTATTTCTGTTCCACCATCCCCTTCCCCTCTGATCTCTGCCAGTCAGTGGTTTGTGTGTGAGGCATTGAAGATCAGCTTCTGTGCTCACAGCTCAGACATTTCTTCTCTTATCTGTAATACCCTATAGTGTTGGTTTGTTTTATTGCTTAGTCGCCTTTTATCCACAATACAAATATAATTGTGCCTTAGGTCTGGTATGAGGTTTCACTTTCATCCAGTTTGAAACGGTTTTCCCTCAGATCCACTTCCTATCCATTTTTCTTTTGTATAAAGGATGCAAAAATATGATTGTATTTTAAATGCTTTTGGTCGGGTCCATTGAGAGTTCCTAAATAAATTACAGATCAGTTACAACAACAA
>XM_021569017.2
GTGTATTACGTGCTGCGTAAGTGAGTCGCGTAAAAATGATGCGTCTGATGTCTAAATATCTGTTAGCAGCTGGATATGGCGGCGCTGCTACGAGGACTACGAGTTGGAAGGGCCCTGCGGGGTTTTGGCAGCGttccaaaaacatccagtcccCAATGCAATGGCCTGAGACGAGGCTTCCACTGTGCTGCACTTCGTCTTCAGGAGGACAAGGACAAGTCCATCCCTGTCcccccatcctctgctgcatCCTCAACTACAACCTACCACGAGCATTACCAAGCCCACCCATCTAAAAACAACACTGCCACACATATGCAGGAAGCGCCTGCACCCGAAGCTGGTGCTAAGGAGGCTCCCCAGCCCAACACTAGTTATGCAGACCAGAGTGGAGAACAAGGAGAAGAGTATGAAACAGAGGAGCAACTGCAAGCACACATCCTTAACGCTGCACTGGACTTTGTCCAACTACATGGTTGGACTCTTGAGGCCATTTCAGCAGGGGCTGAAACACTGggcctctcagcagcctccagtgGAATGTTCCAGAATGGAGCAGGGGACCTGGTTTTGCACTTCATTGCTCAGTGCAATGCCCAGCTAACAGAGCAAATGGCAGAGCAGCACAACCAGGTCCAACTTGGTCAGGCTGAACCAAAGAAAACTGCAGAGTTTCTTAGAGATGCTGTGGAGACTAGATTGAGGATGTTGACGCCATACATGGATAATTGGCCACAGgctATGAGTATTCTGCTCCTCCCACACAACATCCCAGACAGTCTGAAGCACCTCTCCACCCTGGTGGATGATATCTGGTACTACGCTGGAGACCGTTCCACAGATTTGAACTGGTATACGAAACGGGCTGCACTGACAGGGATCTATAACACCACTGAGCTGGTGATGATACAGGACTCCTCAGAAGACTTCCAGGACACCTGGAACTTCCTTGAAAACCGAATCCAGGATATTGTCAACATGGCTGGCGCCGCCAAACAGGCGGCATCTACAGGAGAAGCAGTGGCGCAGGGGCTTTTGGGGGCTGCTGTTACGCTGAAGAATCTAACAGGGATTAACCAAAGACGATGAAAAAAGATGGCTATTTCTGTTCCACCATCCCCTTCCCCTCTGATCTCTGCCAGTCAGTGGTTTGTGTGTGAGGCATTGAAGATCAGCTTCTGTGCTCACAGCTCAGACATTTCTTCTCTTATCTGTAATACCCTATAGTGTTGGTTTGTTTTATTGCTTAGTCGCCTTTTATCCACAATACAAATATAATTGTGCCTTAGGTCTGGTATGAGGTTTCACTTTCATCCAGTTTGAAACGGTTTTCCCTCAGATCCACTTCCTATCCATTTTTCTTTTGTATAAAGGATGCAAAAATATGATTGTATTTTAAATGCTTTTGGTCGGGTCCATTGAGAGTTCCTAAATAAATTACAGATCAGTTACAACAACAA
>XM_036953672.1
GGCGCTGCTACGAGGACTACGAGTTGGAAGGGCCCTGCGGGGTTTTGGCAGCGGTGAGCCAAGACTTGCTACTTGGTCTTTGTCTGTAGGCATTAGCCAGTAGCTCAGGGACTTGACTTTGGTAATCGTGTACATTGATTTAGGTTTAAATCGCGAGAGAACTTGGGAACTAGCTAGCCAACCAATGTCACTTTAAGCAGAAGGTGATCATGAAGGACAGAATCTGttccaaaaacatccagtcccCAATGCAATGGCCTGAGACGAGGCTTCCACTGTGCTGCACTTCGTCTTCAGGAGGACAAGGACAAGTCCATCCCTGTCcccccatcctctgctgcatCCTCAACTACAACCTACCACGAGCATTACCAAGCCCACCCATCTAAAAACAACACTGCCACACATATGCAGGAAGCGCCTGCACCCGAAGCTGGTGCTAAGGAGGCTCCCCAGCCCAACACTAGTTATGCAGACCAGAGTGGAGAACAAGGAGAAGAGTATGAAACAGAGGAGCAACTGCAAGCACACATCCTTAACGCTGCACTGGACTTTGTCCAACTACATGGTTGGACTCTTGAGGCCATTTCAGCAGGGGCTGAAACACTGggcctctcagcagcctccagtgGAATGTTCCAGAATGGAGCAGGGGACCTGGTTTTGCACTTCATTGCTCAGTGCAATGCCCAGCTAACAGAGCAAATGGCAGAGCAGCACAACCAGGTCCAACTTGGTCAGGCTGAACCAAAGAAAACTGCAGAGTTTCTTAGAGATGCTGTGGAGACTAGATTGAGGATGTTGACGCCATACATGGATAATTGGCCACAGgctATGAGTATTCTGCTCCTCCCACACAACATCCCAGACAGTCTGAAGCACCTCTCCACCCTGGTGGATGATATCTGGTACTACGCTGGAGACCGTTCCACAGATGTGAGTCGACCTTCTCAGCCTAAGTACCCCTCTCCCCATGTCTTCCTCACCCCCGTTCATCAGGCACCTCATACTATCCGACCAGCCTCTGCGAAGTTGAACTGGTATACGAAACGGGCTGCACTGACAGGGATCTATAACACCACTGAGCTGGTGATGATACAGGACTCCTCAGAAGACTTCCAGGACACCTGGAACTTCCTTGAAAACCGAATCCAGGATATTGTCAACATGGCTGGCGCCGCCAAACAGGCGGCATCTACAGGAGAAGCAGTGGCGCAGGGGCTTTTGGGGGCTGCTGTTACGCTGAAGAATCTAACAGGGATTAACCAAAGACGATGAAAAAAGATGGCTATTTCTGTTCCACCATCCCCTTCCCCTCTGATCTCTGCCAGTCAGTGGTTTGTGTGTGAGGCATTGAAGATCAGCTTCTGTGCTCACAGCTCAGACATTTCTTCTCTTATCTGTAATACCCTATAGTGTTGGTTTGTTTTATTGCTTAGTCGCCTTTTATCCACAATACAAATATAATTGTGCCTTAGGTCTGGTATGAGGTTTCACTTTCATCCAGTTTGAAACGGTTTTCCCTCAGATCCACTTCCTATCCATTTTTCTTTTGTATAAAGGATGCAAAAATATGATTGTATTTTAAATGCTTTTGGTCGGGTCCATTGAGAGTTCCTAAATAAATTACAGATCAGTTACAACAACAA

Function

NR:

description
ubiquinone biosynthesis protein COQ9-B, mitochondrial-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021569009.2 False 1556 mRNA 0.49 9 66354407 66357907
XM_021569017.2 False 1460 mRNA 0.48 9 66354407 66357907
XM_036953672.1 True 1649 mRNA 0.49 9 66354487 66357907

Neighbor

gene id symbol gene type direction distance location
LOC118937288 LOC106560946 coding upstream 13785 66338871 ~ 66340622 (+)
LOC110494179 LOC106573656 coding upstream 15961 66334512 ~ 66338446 (+)
LOC110494127 LOC106560912 coding upstream 22018 66305919 ~ 66332389 (+)
LOC110494104 LOC106560914 coding upstream 56093 66266850 ~ 66298314 (+)
LOC110494096 LOC106561115 coding upstream 88383 66262594 ~ 66266024 (+)
LOC110494202 polr2c coding downstream 1896 66359803 ~ 66363985 (+)
LOC110494222 LOC106560908 coding downstream 11883 66369790 ~ 66374755 (+)
LOC110494212 LOC106560906 coding downstream 17225 66375132 ~ 66422337 (+)
adat1 adat1 coding downstream 76573 66434480 ~ 66460877 (+)
LOC110494247 LOC106560903 coding downstream 115899 66473806 ~ 66495082 (+)
LOC110494008 LOC106560923 non-coding upstream 354843 65975745 ~ 66031253 (+)
G172658 NA non-coding upstream 383449 65965873 ~ 65970958 (+)
G172637 NA non-coding upstream 424728 65929364 ~ 65929679 (+)
G172630 NA non-coding upstream 435189 65918913 ~ 65919218 (+)
G172592 NA non-coding upstream 484139 65869329 ~ 65870268 (+)
G173804 NA non-coding downstream 172208 66530115 ~ 66530338 (+)
G173805 NA non-coding downstream 172545 66530452 ~ 66530710 (+)
G173806 NA non-coding downstream 173759 66531666 ~ 66531887 (+)
G173808 NA non-coding downstream 175551 66533458 ~ 66533659 (+)
G172639 NA other upstream 418274 65935596 ~ 65936133 (+)
jph3 jph3 other upstream 713431 65593468 ~ 65648660 (+)
map1lc3b map1lc3b other upstream 817620 65531126 ~ 65536787 (+)
G170150 LOC106560975 other upstream 2476174 63873248 ~ 63878233 (+)
G173938 LOC106573687 other downstream 383913 66741820 ~ 66742213 (+)
LOC110494451 zfpm1 other downstream 597617 66900017 ~ 66995521 (+)
LOC110494472 utp4 other downstream 880983 67232278 ~ 67239902 (+)
hsbp1b LOC106561110 other downstream 1128256 67486128 ~ 67488205 (+)
G176612 LOC100846954 other downstream 2502931 68860838 ~ 68861368 (+)

Expression


Co-expression Network