LOC110494202 (polr2c)


Basic Information

Item Value
gene id LOC110494202
gene name polr2c
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 66359803 ~ 66363985 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110494202
ctgagctcttcagtaaggctgttctactggcaatgtttgtctttggagattgcatggctgtgtgctcgattttatacacttgtcagcaacggttgtggctgaaatagcagaatctaCACATTTTAAGGGGTTTCCacgtacttttgtatatacagggCAGGTCTGGGATTTTCGAAGCAAGTGCAGGGTAGTAGTGCCTGCTCATCACCCCGGAGGGCTAGCTAGATCATAAGCTTAAATATTACATGAGACTGCTATTGGCTGAAGTTACAATGTTAATGTGTTCTTTCACATGTGTTGTCTGATTATACAGGGTTGCAAATTCCATCCGACGTGTCTTTATGTCAGAGGTTGCAACAATAGgtctttccccCTCACAAGTGATGATGTTGTGGACAAGATGCAGTACTCCAGAGACTGTACATGTGACGATTTCTGCCCAGAATGCTCTGTTGAACTGACGCTGGACGTTCGCTGCACAGCGGACCAGACACGGCATGTGACGTCACGAGACCTGCTGTCCAACCACCCTTGAGTCATCCCTGTGACCTCCAAGAGTCGAGACAATGATCCCAATGACTGTTGAACAGGATGACATTTTGCTGGTAAAGCTTCGAAAGGGTCAGGAGCTGCGTCTCAGAGCTTGTGCCAAGAAGGGCCTTGGCAAGGAACATGCCAAGTGGAACCCTACAGCCGGTGTATCCTTTGAGTATGACCCAGACAATGCACTGAGGCACACTGTGTACCCACGGCCAGAGGAATGGCCAAAGAGTGAATACTCAGATTGATGAGGTGCAAGCCCCATTTGACCCCAATGGCAAACCTGAGAGGTTCTATTACAATGTGGAGACGTGTGGCTCACTGCGACCTGAGACCATCGTCATGTCTGCTCTGGCAGTGCTGAAAAAGAAACTGAGTGATTTACAGACCCAGCTGAGCCACGAAATCCAGAGTGACGTCCTCACTATCAACTGAGACCTGCAGTTTTAGCCAGTCCTACAACATTGAGACTTGGAGAGCAGATCCAGTTGCAAATCAAACTTTTTGGATGACAACAAACCTGATGTAGGCAGGACAAAAGTTTATTCAAGAGCTCGCCAACTGAAATCAGCAGTTTTTATATCGTCCACCACATTTTGTCCTTTCTCTTCGGTATCTGCTATGTTAATATTTGTCCTTTTTGTTGAAGTTGTTTGCGGGATTATGTTTTGAATTGTTTATTTTGTCTACCGAAAGAATAAACTCAAATTTTCATCCAGATTGAATGTGCTTGCCTTTGAATATAAATAAGGTGATGAATGCGAGCATAGGTGAGCAGTCACTGATGTGGGACTAAATTCTACAAATAATATTCTAAATGCAAACAAGCCCTATATACCTTCTCTTGCAAAGTGGTCTCAgaacatttcgtattattctgtatgtaaatcagaGAGACTCCATTTAGTATGTTACAATTCATTATGTATTATTAATGTCCATCCATTTCGTATGTTAAGAATTCCAATTtcttgtggctaacgttagctaggctagggtttAAGGTTAGTAGTTGGGTTATGTTAaggaaagggttagctaacaaAGTATTGCAAAAAAGTAGTAAGTACTTAACTTTTGCTTTCTAGCTAATAGGCATCCATGATGAG
>TU196314
TGCCTGCTCATCACCCCGGAGGGCTAGCTAGATCATAAGCTTAAATATTACATGAGACTGCTATTGGCTGAAGTTACAATGTTAATGTGTTCTTTCACATGTGTTGTCTGATTATACAGGGTTGCAAATTCCATCCGACGTGTCTTTATGTCAGAGGTTGCAACAATAGgtctttccccCTCACAAGTGATGATGTTGTGGACAAGATGCAGTACTCCAGAGACTGTACATGTGACGATTTCTGCCCAGAATGCTCTGTTGAACTGACGCTGGACGTTCGCTGCACAGCGGACCAGACACGGCATGTGACGTCACGAGACCTGCTGTCCAACCACCCTTGAGTCATCCCTGTGACCTCCAAGAGTCGAGACAATGATCCCAATGACTGTTGAACAGGATGACATTTTGCTGGTAAAGCTTCGAAAGGGTCAGGAGCTGCGTCTCAGAGCTTGTGCCAAGAAGGGCCTTGGCAAGGAACATGCCAAGTGGAACCCTACAGCCGGTGTATCCTTTGAGTATGACCCAGACAATGCACTGAGGCACACTGTGTACCCACGGCCAGAGGAATGGTGTGTTATTTTGTAATGTTAAGGGACAGACAAAGTATTCTGTGAGGGAGAGTGTCACTTATTGTTATCCATTAGAATTGACCCTGCTATTCTCTGTCTCAGGCCAAAGAGTGAATACTCAGATTGATGAGGTGCAAGCCCCATTTGACCCCAATGGCAAACCTGAGAGGTTCTATTACAATGTGGAGACGTGTGGCTCACTGCGACCTGAGACCATCGTCATGTCTGCTCTGGCAGTGCTGAAAAAGAAACTGAGTGATTTACAGACCCAGCTGAGCCACGAAATCCAGAGTGACGTCCTCACTATCAACTGAGACCTGCAGTTTTAGCCAGTCCTACAACATTGAGACTTGGAGAGCAGATCCAGTTGCAAATCAAACTTTTTGGATGACAACAAACCTGATGTAGGCAGGACAAAAGTTTATTCAAGAGCTCGCCAACTGAAATCAGCAGTTTTTATATCGTCCACCACA

Function

symbol description
polr2c Predicted to enable protein dimerization activity. Predicted to contribute to DNA-directed 5'-3' RNA polymerase activity. Predicted to act upstream of or within transcription, DNA-templated. Predicted to be part of RNA polymerase II, core complex. Orthologous to human POLR2C (RNA polymerase II subunit C).

NR:

description
DNA-directed RNA polymerase II subunit RPB3 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110494202 False 1649 mRNA 0.47 7 66359803 66363985
TU196314 True 1042 lncRNA 0.42 6 66359997 66363470

Neighbor

gene id symbol gene type direction distance location
LOC110494184 LOC106560911 coding upstream 1896 66354407 ~ 66357907 (+)
LOC118937288 LOC106560946 coding upstream 19181 66338871 ~ 66340622 (+)
LOC110494179 LOC106573656 coding upstream 21357 66334512 ~ 66338446 (+)
LOC110494127 LOC106560912 coding upstream 27414 66305919 ~ 66332389 (+)
LOC110494104 LOC106560914 coding upstream 61489 66266850 ~ 66298314 (+)
LOC110494222 LOC106560908 coding downstream 5805 66369790 ~ 66374755 (+)
LOC110494212 LOC106560906 coding downstream 11147 66375132 ~ 66422337 (+)
adat1 adat1 coding downstream 70495 66434480 ~ 66460877 (+)
LOC110494247 LOC106560903 coding downstream 109821 66473806 ~ 66495082 (+)
LOC110494252 LOC106560900 coding downstream 132974 66496959 ~ 66507990 (+)
LOC110494008 LOC106560923 non-coding upstream 360239 65975745 ~ 66031253 (+)
G172658 NA non-coding upstream 388845 65965873 ~ 65970958 (+)
G172637 NA non-coding upstream 430124 65929364 ~ 65929679 (+)
G172630 NA non-coding upstream 440585 65918913 ~ 65919218 (+)
G172592 NA non-coding upstream 489535 65869329 ~ 65870268 (+)
G173804 NA non-coding downstream 166130 66530115 ~ 66530338 (+)
G173805 NA non-coding downstream 166467 66530452 ~ 66530710 (+)
G173806 NA non-coding downstream 167681 66531666 ~ 66531887 (+)
G173808 NA non-coding downstream 169473 66533458 ~ 66533659 (+)
G173835 NA non-coding downstream 171229 66535214 ~ 66535447 (+)
LOC110494096 LOC106561115 other upstream 93780 66262594 ~ 66266024 (+)
G172639 NA other upstream 423670 65935596 ~ 65936133 (+)
jph3 jph3 other upstream 718827 65593468 ~ 65648660 (+)
map1lc3b map1lc3b other upstream 823016 65531126 ~ 65536787 (+)
G170150 LOC106560975 other upstream 2481570 63873248 ~ 63878233 (+)
G173938 LOC106573687 other downstream 377835 66741820 ~ 66742213 (+)
LOC110494451 zfpm1 other downstream 591539 66900017 ~ 66995521 (+)
LOC110494472 utp4 other downstream 874905 67232278 ~ 67239902 (+)
hsbp1b LOC106561110 other downstream 1122178 67486128 ~ 67488205 (+)
G176612 LOC100846954 other downstream 2496853 68860838 ~ 68861368 (+)

Expression


Co-expression Network