Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110494202 |
| gene name | polr2c |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048566.1 |
| NCBI id | CM023220.2 |
| chromosome length | 103806877 |
| location | 66359803 ~ 66363985 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| polr2c | Predicted to enable protein dimerization activity. Predicted to contribute to DNA-directed 5'-3' RNA polymerase activity. Predicted to act upstream of or within transcription, DNA-templated. Predicted to be part of RNA polymerase II, core complex. Orthologous to human POLR2C (RNA polymerase II subunit C). |
| description |
|---|
| DNA-directed RNA polymerase II subunit RPB3 isoform X2 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| LOC110494202 | False | 1649 | mRNA | 0.47 | 7 | 66359803 | 66363985 |
| TU196314 | True | 1042 | lncRNA | 0.42 | 6 | 66359997 | 66363470 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110494184 | LOC106560911 | coding | upstream | 1896 | 66354407 ~ 66357907 (+) |
| LOC118937288 | LOC106560946 | coding | upstream | 19181 | 66338871 ~ 66340622 (+) |
| LOC110494179 | LOC106573656 | coding | upstream | 21357 | 66334512 ~ 66338446 (+) |
| LOC110494127 | LOC106560912 | coding | upstream | 27414 | 66305919 ~ 66332389 (+) |
| LOC110494104 | LOC106560914 | coding | upstream | 61489 | 66266850 ~ 66298314 (+) |
| LOC110494222 | LOC106560908 | coding | downstream | 5805 | 66369790 ~ 66374755 (+) |
| LOC110494212 | LOC106560906 | coding | downstream | 11147 | 66375132 ~ 66422337 (+) |
| adat1 | adat1 | coding | downstream | 70495 | 66434480 ~ 66460877 (+) |
| LOC110494247 | LOC106560903 | coding | downstream | 109821 | 66473806 ~ 66495082 (+) |
| LOC110494252 | LOC106560900 | coding | downstream | 132974 | 66496959 ~ 66507990 (+) |
| LOC110494008 | LOC106560923 | non-coding | upstream | 360239 | 65975745 ~ 66031253 (+) |
| G172658 | NA | non-coding | upstream | 388845 | 65965873 ~ 65970958 (+) |
| G172637 | NA | non-coding | upstream | 430124 | 65929364 ~ 65929679 (+) |
| G172630 | NA | non-coding | upstream | 440585 | 65918913 ~ 65919218 (+) |
| G172592 | NA | non-coding | upstream | 489535 | 65869329 ~ 65870268 (+) |
| G173804 | NA | non-coding | downstream | 166130 | 66530115 ~ 66530338 (+) |
| G173805 | NA | non-coding | downstream | 166467 | 66530452 ~ 66530710 (+) |
| G173806 | NA | non-coding | downstream | 167681 | 66531666 ~ 66531887 (+) |
| G173808 | NA | non-coding | downstream | 169473 | 66533458 ~ 66533659 (+) |
| G173835 | NA | non-coding | downstream | 171229 | 66535214 ~ 66535447 (+) |
| LOC110494096 | LOC106561115 | other | upstream | 93780 | 66262594 ~ 66266024 (+) |
| G172639 | NA | other | upstream | 423670 | 65935596 ~ 65936133 (+) |
| jph3 | jph3 | other | upstream | 718827 | 65593468 ~ 65648660 (+) |
| map1lc3b | map1lc3b | other | upstream | 823016 | 65531126 ~ 65536787 (+) |
| G170150 | LOC106560975 | other | upstream | 2481570 | 63873248 ~ 63878233 (+) |
| G173938 | LOC106573687 | other | downstream | 377835 | 66741820 ~ 66742213 (+) |
| LOC110494451 | zfpm1 | other | downstream | 591539 | 66900017 ~ 66995521 (+) |
| LOC110494472 | utp4 | other | downstream | 874905 | 67232278 ~ 67239902 (+) |
| hsbp1b | LOC106561110 | other | downstream | 1122178 | 67486128 ~ 67488205 (+) |
| G176612 | LOC100846954 | other | downstream | 2496853 | 68860838 ~ 68861368 (+) |
