adat1 (adat1)


Basic Information

Item Value
gene id adat1
gene name adat1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 66434480 ~ 66460877 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036953681.1
ACGGAGCATGTCTTGTGTGCAAATAAGAATGTGTGTAATGCAATGAATATTGGCTGTATCGTTGAAATACATATACAAGAGAGACTACGAATAACCGTGTTTTATTCACTTTACGTACCTTCACAACAGGCTGCTGCCACCATAGTTAACCAGATAGCTAGTTTGTTTAAAACTCGCTGCAATATGTGGACCGCCGATGAGATTTCCAAACTGTGCTACCAGCGCTTTAGCGAGTTGCCCAAGAGAGGAAAGCCCGAGCCGGGCAGAGAGTGGACGCTTTTGGCCGCCGTAGTAAAGTGTTCAGTGTCCCCGAATCAAGAGAAAGTTGAGGAGGTAGTGTCATTGGGAACTGGCACTAAGTGTATTGGGCGCTCAGCCATGAGCTCAAAGGGAGATGTGCTCAATGACAGCCATGCAGAAGTCATTGCCAGGAGGGGTTGCATTAGGTATCTGACTGAGCAGCTGCGGATGGCAGTATGTGGGCAAGGCAGCACTGTGTTCTgtcagggagaggagatgggaaagTGGAAGGTGCAGTCAGGGGTGTCTTTCCTGTTCTTCACAAGTCACACACCATGTGGAGATGCCTCCATCATTCCCATGATGATTGACCGCCAATCCCAACCCTGCCCACCAATAAGGTCAGATGAGATCATCCCCAATGGAACCAATGAAAAAGCAGAAAGACTGAACCCGAAACGCAGAGCGGAGACACAGACTGATGGGATCAATAAGCATCCTCGATTAGAAGAACCGGAGAAGTCACAGTATGAGCTACAGTGTGGTGGGAGCCTGGTTGAAAATCTTACTGACAGCCCTGCACAGGCCCATGCAGAGAGTCCAAGGCCGGAGGGGAAGAACGCTCTGACCAACGTGGTGTTAAGACAAAGGGACAATGTTTTGACACAACAGTCTCTACAGGACATACACCGGACAGGTGCTAAGTGTGTCCCTGGAGGACCAGAGGATCCCCTCCAGCCCGGGTTAGGGTACCACAGTACTGGGCTGCTGAGAGTGAAGCCTGGTAGGGGGGagcccactctgtctctctcctgcagTGACAAGCTGGCCAGGTGGGCAGTGCTAGGTTTCCAGGGTGCGCTGCTCTCCCATTACCTACAGGGGGCAGTCTACTTCAGCGCAATAGTGGTGGGGAGATGTCCATACAGCCATCAGGCCATGCAGAGAGCTCTGATCACCAGGTGTTCTGAGGTGACAGCCCTGCCTGCTGGCTACACAGTGCAGCCTCCAGAGCTTCTGCAGTCCAGCCTGGAGTTTGCTCACAGCCAGGCACAGACTGAGCACAATCATCAGCCCGGCAAGGGCAGAGTCTCACCTTGTGGCGCAGATTGTATTTGGAACCCCATCGCCCCCGTTGCCTCGATGAATTGGTTTGACCTCTCTTTTTTGTTCAGTGCTTTTAGAAAGCATTAGTTACACCACTGGTGTTTTTAAAATGAAAAGGCACCTGCAAAATAATTGTATCTGTTTTGTTGTGCTGTTAGATTTGTGTCATTATTTCATGTCCGATGGTGTTGGTCCAATGGTGTTGTTAGATATAATTTGAGCTGCGTGTACCATAAGGGAATTCATTATAATCTTACTTTGCTTGTAAGAACCATGATGCGCAATGGCATGTCTGATTAGGCTTTGCTGTAGGGCAGACTCTGTGTAGCCTTCCATCAGCCTACCAAAGGTTGCACCTTAGCAAACAACTGCATGTCCGGTAGCTCGCAGACTGTCAATGAGTAGCTCGCAAGTAGATAAGTGAGAAATAATCAGTAGGCCTTATATTACATGATTAAATGTTTTCAAAAATCATCCTCCCCAGGCTGTTTACAGGCAATTAACACCATTCTGCAATTTTGCCATATACTTTCAGTTACAtattgggatattatttttgacggtacagtgcattcggaaagtattcagaccccttgactatttctACATTTTAGTacttttacagccttattctaaaatgaattaaattctTGTTTTTTTGTTCTCACCAATCTATACAAAATAccccatgacaaagcaaaatggtttttatttattttttgctaatttataaaaatgacaca
>XM_021569147.2
ACGGAGCATGTCTTGTGTGCAAATAAGAATGTGTGTAATGCAATGAATATTGGCTGTATCGTTGAAATACATATACAAGAGAGACTACGAATAACCGTGTTTTATTCACTTTACGTACCTTCACAACAGGCTGCTGCCACCATAGTTAACCAGATAGCTAGTTTGTTTAAAACTCGCTGCAATATGTGGACCGCCGATGAGATTTCCAAACTGTGCTACCAGCGCTTTAGCGAGTTGCCCAAGAGAGGAAAGCCCGAGCCGGGCAGAGAGTGGACGCTTTTGGCCGCCGTAGTAAAGTGTTCAGTGTCCCCGAATCAAGAGAAAGTTGAGGAGGTAGTGTCATTGGGAACTGGCACTAAGTGTATTGGGCGCTCAGCCATGAGCTCAAAGGGAGATGTGCTCAATGACAGCCATGCAGAAGTCATTGCCAGGAGGGGTTGCATTAGGTATCTGACTGAGCAGCTGCGGATGGCAGTATGTGGGCAAGGCAGCACTGTGTTCTgtcagggagaggagatgggaaagTGGAAGGTGCAGTCAGGGGTGTCTTTCCTGTTCTTCACAAGTCACACACCATGTGGAGATGCCTCCATCATTCCCATGATGATTGACCGCCAATCCCAACCCTGCCCACCAATAAGGTCAGATGAGATCATCCCCAATGGAACCAATGAAAAAGCAGAAAGACTGAACCCGAAACGCAGAGCGGAGACACAGACTGATGGGATCAATAAGCATCCTCGATTAGAAGAACCGGAGAAGTCACAGTATGAGCTACAGTGTGGTGGGAGCCTGGTTGAAAATCTTACTGACAGCCCTGCACAGGCCCATGCAGAGAGTCCAAGGCCGGAGGGGAAGAACGCTCTGACCAACGTGGTGTTAAGACAAAGGGACAATGTTTTGACACAACAGTCTCTACAGGACATACACCGGACAGGTGCTAAGTGTGTCCCTGGAGGACCAGAGGATCCCCTCCAGCCCGGGTTAGGGTACCACAGTACTGGGCTGCTGAGAGTGAAGCCTGGTAGGGGGGagcccactctgtctctctcctgcagTGACAAGCTGGCCAGGTGGGCAGTGCTAGGTTTCCAGGGTGCGCTGCTCTCCCATTACCTACAGGGGGCAGTCTACTTCAGCGCAATAGTGGTGGGGAGATGTCCATACAGCCATCAGGCCATGCAGAGAGCTCTGATCACCAGGTGTTCTGAGGTGACAGCCCTGCCTGCTGGCTACACAGTGCAGCCTCCAGAGCTTCTGCAGTCCAGCCTGGAGTTTGCTCACAGCCAGGCACAGACTGAGCACAATCATCAGCCCGGCAAGGGCAGAGTCTCACCTTGTGGCGCAGCAATCAGCTGGTGCGCTGTGTCGGATCAGCCACTAGATGTCACTGCTAATGGCTATAAACATGGAGTGACCAAGAAGGCTCTGGGCACATCAAAAGCAAGGTCTCTTATTTGCAAAGTGGAACTATTTCATTCTTTCCTGTCACTGCTGGCTGTCACTGACAAGTCCCACCTCCCTGAATCTCTAAGGGGAAAGGAGCTCCAGACGTACTGGGACTACAAGCAGGTGGCTCAGTCGTACCAGCAGGCCTCGCTGCAGCTGCGCTCACAGGCCTTCCCACTGTGGCTCCGCAGTGATCGCGACCTGCTGCAGTTTCACTGAAACACAGCACAACTGTGTACTAACCAGAAACTGGTTAgtacagaatgctgtgtgattaTTAGAGGGACATAGCCAAAAACATGTGAAAGGACACAAACATACTGTCAGGAAGCATTATTTTACTTCTGGATGTGCCAAGGAGACCAAATTTGGCAGTACATGCAAAGACATGAGTTTAGAAAGGGCTTGGAGCTCACATAGTCAGTATCCCCATGTAGCCAACTCAGATATAAATCACTTGGCTTGGAATGTGTTAAAATTCCACTAGAACAATGCATGACCTGTTTTTCAAATTTATTTATCTGTTCATTCTCATTATGTTCATGAGATCTGCGTCATTGATTTGTGTGACAGTCTTTGTTCCTGTATGTCCAGGATGTTATGTTATATTATTACAGTATTACTTCTGAATATTTTTCTGTTGCTAAAAATGGATTGGTTGTTTTGAATGAGTACAGATAGtaatttagttgtttttttttattaggtAGTCCAGCTACCTTTCATATATTCAAAATATTTGGAATATACTGTCTTTAAAGATAAACAGATTCAACGTTGTTAAATTAAAACAAAAAAGTTATTACTGTATAGCTGATTATCTTTAACTGCTAATAGTACTGCAATAACATTGCCAAACGTATTTTTCCTTTTCCATCCATCACTACcacagagaggcggctgcctacttagacttgatatcattggccactttaataaatagaacaCTATTCActttaatgccactttaagaatgtttacatatc
>XM_021569157.2
ACGGAGCATGTCTTGTGTGCAAATAAGAATGTGTGTAATGCAATGAATATTGGCTGTATCGTTGAAATACATATACAAGAGAGACTACGAATAACCGTGTTTTATTCACTTTACGTACCTTCACAACAGGCTGCTGCCACCATAGTTAACCAGATAGCTAGTTTGTTTAAAACTCGCTGCAATATGTGGACCGCCGATGAGATTTCCAAACTGTGCTACCAGCGCTTTAGCGAGTTGCCCAAGAGAGGAAAGCCCGAGCCGGGCAGAGAGTGGACGCTTTTGGCCGCCGTAGTAAAGTGTTCAGTGTCCCCGAATCAAGAGAAAGTTGAGGAGGTAGTGTCATTGGGAACTGGCACTAAGTGTATTGGGCGCTCAGCCATGAGCTCAAAGGGAGATGTGCTCAATGACAGCCATGCAGAAGTCATTGCCAGGAGGGGTTGCATTAGGTATCTGACTGAGCAGCTGCGGATGGCAGTATGTGGGCAAGGCAGCACTGTGTTCTgtcagggagaggagatgggaaagTGGAAGGTGCAGTCAGGGGTGTCTTTCCTGTTCTTCACAAGTCACACACCATGTGGAGATGCCTCCATCATTCCCATGATGATTGACCGCCAATCCCAACCCTGCCCACCAATAAGGTCAGATGAGATCATCCCCAATGGAACCAATGAAAAAGCAGAAAGACTGAACCCGAAACGCAGAGCGGAGACACAGACTGATGGGATCAATAAGCATCCTCGATTAGAAGAACCGGAGAAGTCACAGTATGAGCTACAGTGTGGTGGGAGCCTGGTTGAAAATCTTACTGACAGCCCTGCACAGGCCCATGCAGAGAGTCCAAGGCCGGAGGGGAAGAACGCTCTGACCAACGTGGTGTTAAGACAAAGGGACAATGTTTTGACACAACAGTCTCTACAGGACATACACCGGACAGGTGCTAAGTGTGTCCCTGGAGGACCAGAGGATCCCCTCCAGCCCGGGTTAGGGTACCACAGTACTGGGCTGCTGAGAGTGAAGCCTGGTAGGGGGGagcccactctgtctctctcctgcagTGACAAGCTGGCCAGGTGTTCTGAGGTGACAGCCCTGCCTGCTGGCTACACAGTGCAGCCTCCAGAGCTTCTGCAGTCCAGCCTGGAGTTTGCTCACAGCCAGGCACAGACTGAGCACAATCATCAGCCCGGCAAGGGCAGAGTCTCACCTTGTGGCGCAGCAATCAGCTGGTGCGCTGTGTCGGATCAGCCACTAGATGTCACTGCTAATGGCTATAAACATGGAGTGACCAAGAAGGCTCTGGGCACATCAAAAGCAAGGTCTCTTATTTGCAAAGTGGAACTATTTCATTCTTTCCTGTCACTGCTGGCTGTCACTGACAAGTCCCACCTCCCTGAATCTCTAAGGGGAAAGGAGCTCCAGACGTACTGGGACTACAAGCAGGTGGCTCAGTCGTACCAGCAGGCCTCGCTGCAGCTGCGCTCACAGGCCTTCCCACTGTGGCTCCGCAGTGATCGCGACCTGCTGCAGTTTCACTGAAACACAGCACAACTGTGTACTAACCAGAAACTGGTTAgtacagaatgctgtgtgattaTTAGAGGGACATAGCCAAAAACATGTGAAAGGACACAAACATACTGTCAGGAAGCATTATTTTACTTCTGGATGTGCCAAGGAGACCAAATTTGGCAGTACATGCAAAGACATGAGTTTAGAAAGGGCTTGGAGCTCACATAGTCAGTATCCCCATGTAGCCAACTCAGATATAAATCACTTGGCTTGGAATGTGTTAAAATTCCACTAGAACAATGCATGACCTGTTTTTCAAATTTATTTATCTGTTCATTCTCATTATGTTCATGAGATCTGCGTCATTGATTTGTGTGACAGTCTTTGTTCCTGTATGTCCAGGATGTTATGTTATATTATTACAGTATTACTTCTGAATATTTTTCTGTTGCTAAAAATGGATTGGTTGTTTTGAATGAGTACAGATAGtaatttagttgtttttttttattaggtAGTCCAGCTACCTTTCATATATTCAAAATATTTGGAATATACTGTCTTTAAAGATAAACAGATTCAACGTTGTTAAATTAAAACAAAAAAGTTATTACTGTATAGCTGATTATCTTTAACTGCTAATAGTACTGCAATAACATTGCCAAACGTATTTTTCCTTTTCCATCCATCACTACcacagagaggcggctgcctacttagacttgatatcattggccactttaataaatagaacaCTATTCActttaatgccactttaagaatgtttacatatct

Function

symbol description
adat1 Predicted to enable RNA binding activity and adenosine deaminase activity. Predicted to act upstream of or within RNA processing. Orthologous to human ADAT1 (adenosine deaminase tRNA specific 1).

NR:

description
tRNA-specific adenosine deaminase 1 isoform X2

GO: NA

KEGG:

id description
K15440 TAD1, ADAT1; tRNA-specific adenosine deaminase 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036953681.1 False 2090 mRNA 0.47 7 66434480 66443300
XM_021569147.2 False 2435 mRNA 0.47 9 66434480 66460876
XM_021569157.2 True 2307 mRNA 0.46 9 66434480 66460877

Neighbor

gene id symbol gene type direction distance location
LOC110494212 LOC106560906 coding upstream 12143 66375132 ~ 66422337 (+)
LOC110494222 LOC106560908 coding upstream 59725 66369790 ~ 66374755 (+)
LOC110494202 polr2c coding upstream 70495 66359803 ~ 66363985 (+)
LOC110494184 LOC106560911 coding upstream 76573 66354407 ~ 66357907 (+)
LOC118937288 LOC106560946 coding upstream 93858 66338871 ~ 66340622 (+)
LOC110494247 LOC106560903 coding downstream 12929 66473806 ~ 66495082 (+)
LOC110494252 LOC106560900 coding downstream 36082 66496959 ~ 66507990 (+)
LOC110494260 LOC106560901 coding downstream 47365 66508242 ~ 66529561 (+)
LOC110494278 chmp1a coding downstream 77078 66537955 ~ 66547328 (+)
LOC110494286 LOC106560898 coding downstream 88668 66549545 ~ 66552357 (+)
LOC110494008 LOC106560923 non-coding upstream 434916 65975745 ~ 66031253 (+)
G172658 NA non-coding upstream 463522 65965873 ~ 65970958 (+)
G172637 NA non-coding upstream 504801 65929364 ~ 65929679 (+)
G172630 NA non-coding upstream 515262 65918913 ~ 65919218 (+)
G173804 NA non-coding downstream 69238 66530115 ~ 66530338 (+)
G173805 NA non-coding downstream 69575 66530452 ~ 66530710 (+)
G173806 NA non-coding downstream 70789 66531666 ~ 66531887 (+)
G173808 NA non-coding downstream 72581 66533458 ~ 66533659 (+)
G173835 NA non-coding downstream 74337 66535214 ~ 66535447 (+)
LOC110494096 LOC106561115 other upstream 168457 66262594 ~ 66266024 (+)
G172639 NA other upstream 498347 65935596 ~ 65936133 (+)
jph3 jph3 other upstream 793504 65593468 ~ 65648660 (+)
map1lc3b map1lc3b other upstream 897693 65531126 ~ 65536787 (+)
G170150 LOC106560975 other upstream 2556247 63873248 ~ 63878233 (+)
G173938 LOC106573687 other downstream 280943 66741820 ~ 66742213 (+)
LOC110494451 zfpm1 other downstream 494647 66900017 ~ 66995521 (+)
LOC110494472 utp4 other downstream 778013 67232278 ~ 67239902 (+)
hsbp1b LOC106561110 other downstream 1025286 67486128 ~ 67488205 (+)
G176612 LOC100846954 other downstream 2399961 68860838 ~ 68861368 (+)

Expression


Co-expression Network