LOC110494247 (LOC106560903)


Basic Information

Item Value
gene id LOC110494247
gene name LOC106560903
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 66473806 ~ 66495082 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036953684.1
GATCGCCCTGTAGCCTACTTTGATAGGATGGTGGGTTCAATATTTTGTGGGTTGGTTGGATGATGCTCTGGATGAGTGAGACAGGGGCGGAGCACAGCGGCTGTTGGGATACGCTGCAGTGGAGCCAAAAATCTGGGGAACCAGACTGTCAAACCTAAGGTTGATTGCGACACTGGCGTAAGGTTTCCGCCTCCTCTCCTTTCGGCACTGATTGAAATTCATGCAGATCAAAGATCGCTTTCGTTTACTGTTATGGTAACTCGCAGCTGCGGCAGTTGAGTTGGCGTGCTGTGGGGAAGGAAGGAACTCGGCGGGAACAGATAATGGCCTCCGAGCCGGCGGAGTAATGGGATCGGTCGCCTACCGCAGTCATGGCCAGATCAACAAACAGAAGCGCCAAGGATGGAGATTCCAGGGTGTCTGCTCCCACGGACCGGGCAGAGGCGCGGGACCTGAGCGACCCCAGAGAACTGTCTCTTGAAGAAGTGCTGAAATCCTACGAGCAGCCCATAAACGAGGAGCAGGCTTGGGCGATGTGTTATCAATGCTGTAGCTGGTTGAGAGTGCCGCGCCCGGCCACTGTGACTGGTGGAGTTTACAGGGTGAAGGGCCCGTCCTCTATACTCCTACTCAGGGATGGGACGGTTTCCCCAAAGCAAGAATCAGATGACACAGATGGACCTCCCCTTCCACCAATCACAGAGCGCCAGCTGGTTCAGTCTCTGGGCGTGGCCATCTACCAGGCCCTAGACTGGGGACTGGATGACAGTGAGGAGCGGGAGCTGAGTCCTCAGTTGGAGCGGCTCATTGAGCGCATGGCAGGAGGAAATCATAGCCTGCAGGCTGACTCCGGCGGTGGCAACGGAACAACAGATGAGGGCTACAGTggacaggaggaagaggaagaggagggagaaaagggggctATAAGACCAGTGTGTACATTCAGCCAGGTGATGACGCTGTGCACCTCCAGATTGGCAAACCCTGCTCTTGCTCCGGAGCACTACCAGGCTGTGTGCAGAGCCTTGTTCGTTGAGACTCTTGAGCTGCAAACCTTCCTGATCAAAATCCGAAATGCCAAGGAGATGCTGAAGAAGATCAATGGAGAGGATCCTCAGGAAGATCAAGCTGAGATCGatgcactgaaacacacagactgGACTCGTCTCTGGGTCCAGTTGATGAAGGAGCTGAGACAGGGGGTGAAACTGAAGAAGGTGCAGGAGCATGAGTTTGACACACTGCCCACTGAGTTCAGCCTCACTCCCTTTGAGATGCTCATGCAGGATATCCGCACCCGCAAGTTCCAGCTGCGGAAAGTCATGGAGGATGGTGACATCCCCACACGAGTGAAAAGAAATGCCCATGAGTTTATTTTGGACTTCATCAGGTCTCGCCCTCCACTGAAACCAGCGTCAGAGCGCAACCTGGCCCCTCCTCCTCAGGAGCAGCAGTCCCTTCACGAACGCGTCCTCGCTGAAATCAAACAGGAGCGCAAACTGAAGCCTGTGGACTCACCCGGCTCCAAGAGATCGTTTGGCTCCTTGCCCTGTCTGGCACCCACCTTCCCGTGTGATTTCAAATCTACTTCCTGCATTGACCTGTCAGTCTCAGAGCTTAGGTCCCGCCCCCCATCTCATCCTCGTGTTCTGCTCAAAGCTCCTACTCTtcaggagatggaggagatgagtATTTTGGagGATGAGGAGTCTCCAGGAGAGCTCTGCCGGGCTGAGAGTTTTCCCACATCCATGAAACGGGACCGCTCCTTCTCTGAACATGACCTGGCTGAGCTCAGGGGGGAGATTCTCCCCTCACTGTCCGAATCCGCCCATCTGGGAAGGGCTGTGTTGTGGAAGGGGGAGAGACCAcggtcacacacactctcaggggCTGGGCCACCCCCCACGCACAGAGGCTGGGTGCCCCTCTCCCCTGCCCGTATCTCTCTCAGCTCAGTGGATGAGACCACAGAAGGGGCAGAGACTGGCTCCAGCTCTCGGGGTGGCTATAAACCCAAGTGGATGGAGGAATTCAGTCACCCAGTGGAGAGTCTTGCCTTAACAGTCGATGAGGTCATCAATGTGCGTCGTGTGCTGGTGAAAGCAGAGATGGAGAAGTACCTCCAGAACAAGGAACTGTATTACAATCTGAGGAGAGGCAAGGTGTGCTGTTGCTGCAGAATTAAATTCCCCCTCTTTTCCTGGCCATCCACCTGCCTGCTCTGTAAAAGGTCTGTCTGTGGATCCTGTAGTGCAAAGGTATCCTACAGCCCCTTCCTCTTTGACAGTATGAAGATTCCTTCCAAGAAGATGGCCCACATCCCAGTCTACACTGTGGGCTTTCACAGCAGCCCAAAGAGCCATGGTCGCAAGAGTGAGGTTTACAAATCTTTGCGTACTCTCTCCCGCCGGTCTGTGGAGGAGGAGTTCCCCCACCTGTACGCCCATGGCTGCAGCCTGCGGGATGTCTGTGTGGACTGCACCAAGTTTGTGGCTGATGTCATCTCGTCCAGTCGCAAGAGCCTGGACATCCTCAACAACACTCCCAAGAGGGAGAGTGCTACGCCCAAGACACACCCCCAACCTCATGCGTCACCACATCCGCCCACCTTGAAGAGGAAGAACAAGTGAATAGATCCGACTGTTGGTTTTTCCTGCGCCTCCTTAACAGGGTTGCACCTGTGCTGCACGACTAGCCTACTCAAATACCCCACCATTCCCCCTAACCTGCAAGTATCCCCTCCTCCTGCTGAAGTGCTTGTTAAGGGTTGTTCCTCCCCCACTCCACTGTGGAGGTTCATAGGAGGATATGGCCTAGGAACAACAATAAGTCTGCCTCATCACAGCAGTGATTACTTCACTCACTGGTCTGATACACAGCTGAAACTGAGAGAGAGGACGTAAGGGAGAAGTGGAGGGCAAGCAGAGAAGGGAGGcaaaacagagggaggaggaaatgggtgagagaggaagaggtaagGATGATTGGAAAAAGGAGATGTATCTACTGTAGGAGCCAAGAGTTTGGTTTAGACTAAACATTTAGCTCCCTAGTTGCCTTGTTGTAGTTGTGAAACACCAAAATAACACATTTTAACTGTAAACGCACCTTGCCATGACACACCTTCTTAGAacactggattttttttcctggAATTTTAAAATAACACTATGGCAAGCTCAATAGAAGAGATATTTCACTATGACAATAGTTGTTGGAATGTGCTAGGATTGTCTGTGGTCCAACTTAATGATGCATGGTGACATTGTCTGTACGACTGTTTGAATGTAACCGGGTCTGagaggactagtaaaggtcaGTTCTGGGTAAAAGAGATCCTGAGAGAGACCATTCCTGTTGGCACCACACGGGACTGGACCCCAGCCGTCTATCTCTGCTGCTTCAGAATTACATTTaagccccctctctcaccctcgaTGGTCCTGTGAGATCTGCTCTAATTTTCTAAACACTAAGTAAACCTCAACTGCAATAAATCTAATGTAACCATGAA
>XM_036953685.1
TGTAGCCTACTTTGATAGGATGGTGGGTTCAATATTTTGTGGGTTGGTTGGATGATGCTCTGGATGAGTGAGACAGGGGCGGAGCACAGCGGCTGTTGGGATACGCTGCAGTGGAGCCAAAAATCTGGGGAACCAGACTGTCAAACCTAAGGTTGATTGCGACACTGGCGTAAGGTTTCCGCCTCCTCTCCTTTCGGCACTGATTGAAATTCATGCAGATCAAAGATCGCTTTCGTTTACTGTTATGGTAACTCGCAGCTGCGGCAGTTGAGTTGGCGTGCTGTGGGGAAGGAAGGAACTCGGCGGGAACAGATAATGGCCTCCGAGCCGGCGGAGTAATGGGATCGGTCGCCTACCGCAGTCATGGCCAGATCAACAAACAGAAGCGCCAAGGATGGAGATTCCAGGGTGTCTGCTCCCACGGACCGGGCAGAGGCGCGGGACCTGAGCGACCCCAGAGAACTGTCTCTTGAAGAAGTGCTGAAATCCTACGAGCAGCCCATAAACGAGGAGCAGGCTTGGGCGATGTGTTATCAATGCTGTAGCTGGTTGAGAGTGCCGCGCCCGGCCACTGTGACTGGTGGAGTTTACAGGGTGAAGGGCCCGTCCTCTATACTCCTACTCAGGGATGGGACGGTTTCCCCAAAGCAAGAATCAGATGACACAGATGGACCTCCCCTTCCACCAATCACAGAGCGCCAGCTGGTTCAGTCTCTGGGCGTGGCCATCTACCAGGCCCTAGACTGGGGACTGGATGACAGTGAGGAGCGGGAGCTGAGTCCTCAGTTGGAGCGGCTCATTGAGCGCATGGCAGGAGGAAATCATAGCCTGCAGGCTGACTCCGGCGGTGGCAACGGAACAACAGATGAGGGCTACAGTggacaggaggaagaggaagaggagggagaaaagggggctATAAGACCAGTGTGTACATTCAGCCAGGTGATGACGCTGTGCACCTCCAGATTGGCAAACCCTGCTCTTGCTCCGGAGCACTACCAGGCTGTGTGCAGAGCCTTGTTCGTTGAGACTCTTGAGCTGCAAACCTTCCTGATCAAAATCCGAAATGCCAAGGAGATGCTGAAGAAGATCAATGGAGAGGATCCTCAGGAAGATCAAGCTGAGATCGatgcactgaaacacacagactgGACTCGTCTCTGGGTCCAGTTGATGAAGGAGCTGAGACAGGGGGTGAAACTGAAGAAGGTGCAGGAGCATGAGTTTGACACACTGCCCACTGAGTTCAGCCTCACTCCCTTTGAGATGCTCATGCAGGATATCCGCACCCGCAAGTTCCAGCTGCGGAAAGTCATGGAGGATGGTGACATCCCCACACGAGTGAAAAGAAATGCCCATGAGTTTATTTTGGACTTCATCAGGTCTCGCCCTCCACTGAAACCAGCGTCAGAGCGCAACCTGGCCCCTCCTCCTCAGGAGCAGCAGTCCCTTCACGAACGCGTCCTCGCTGAAATCAAACAGGAGCGCAAACTGAAGCCTGTGGACTCACCCGGCTCCAAGAGATCGTTTGGCTCCTTGCCCTGTCTGGCACCCACCTTCCCGTGTGATTTCAAATCTACTTCCTGCATTGACCTGTCAGTCTCAGAGCTTAGGTCCCGCCCCCCATCTCATCCTCGTGTTCTGCTCAAAGCTCCTACTCTtcaggagatggaggagatgagtATTTTGGagGATGAGGAGTCTCCAGGAGAGCTCTGCCGGGCTGAGAGTTTTCCCACATCCATGAAACGGGACCGCTCCTTCTCTGAACATGACCTGGCTGAGCTCAGGGGGGAGATTCTCCCCTCACTGTCCGAATCCGCCCATCTGGGAAGGGCTGTGTTGTGGAAGGGGGAGAGACCAcggtcacacacactctcaggggCTGGGCCACCCCCCACGCACAGAGGCTGGGTGCCCCTCTCCCCTGCCCGTATCTCTCTCAGCTCAGTGGATGAGACCACAGAAGGGGCAGAGACTGGCTCCAGCTCTCGGGGTGGCTATAAACCCAAGTGGATGGAGGAATTCAGTCACCCAGTGGAGAGTCTTGCCTTAACAGTCGATGAGGTCATCAATGTGCGTCGTGTGCTGGTGAAAGCAGAGATGGAGAAGTACCTCCAGAACAAGGAACTGTATTACAATCTGAGGAGAGGCAAGGTGTGCTGTTGCTGCAGAATTAAATTCCCCCTCTTTTCCTGGCCATCCACCTGCCTGCTCTGTAAAAGGTCTGTCTGTGGATCCTGTAGTGCAAAGATGAAGATTCCTTCCAAGAAGATGGCCCACATCCCAGTCTACACTGTGGGCTTTCACAGCAGCCCAAAGAGCCATGGTCGCAAGAGTGAGGTTTACAAATCTTTGCGTACTCTCTCCCGCCGGTCTGTGGAGGAGGAGTTCCCCCACCTGTACGCCCATGGCTGCAGCCTGCGGGATGTCTGTGTGGACTGCACCAAGTTTGTGGCTGATGTCATCTCGTCCAGTCGCAAGAGCCTGGACATCCTCAACAACACTCCCAAGAGGGAGAGTGCTACGCCCAAGACACACCCCCAACCTCATGCGTCACCACATCCGCCCACCTTGAAGAGGAAGAACAAGTGAATAGATCCGACTGTTGGTTTTTCCTGCGCCTCCTTAACAGGGTTGCACCTGTGCTGCACGACTAGCCTACTCAAATACCCCACCATTCCCCCTAACCTGCAAGTATCCCCTCCTCCTGCTGAAGTGCTTGTTAAGGGTTGTTCCTCCCCCACTCCACTGTGGAGGTTCATAGGAGGATATGGCCTAGGAACAACAATAAGTCTGCCTCATCACAGCAGTGATTACTTCACTCACTGGTCTGATACACAGCTGAAACTGAGAGAGAGGACGTAAGGGAGAAGTGGAGGGCAAGCAGAGAAGGGAGGcaaaacagagggaggaggaaatgggtgagagaggaagaggtaagGATGATTGGAAAAAGGAGATGTATCTACTGTAGGAGCCAAGAGTTTGGTTTAGACTAAACATTTAGCTCCCTAGTTGCCTTGTTGTAGTTGTGAAACACCAAAATAACACATTTTAACTGTAAACGCACCTTGCCATGACACACCTTCTTAGAacactggattttttttcctggAATTTTAAAATAACACTATGGCAAGCTCAATAGAAGAGATATTTCACTATGACAATAGTTGTTGGAATGTGCTAGGATTGTCTGTGGTCCAACTTAATGATGCATGGTGACATTGTCTGTACGACTGTTTGAATGTAACCGGGTCTGagaggactagtaaaggtcaGTTCTGGGTAAAAGAGATCCTGAGAGAGACCATTCCTGTTGGCACCACACGGGACTGGACCCCAGCCGTCTATCTCTGCTGCTTCAGAATTACATTTaagccccctctctcaccctcgaTGGTCCTGTGAGATCTGCTCTAATTTTCTAAACACTAAGTAAACCTCAACTGCAATAAATCTAATGTAACCATGAA

Function

NR:

description
protein spire homolog 2-like

GO: NA

KEGG:

id description
K02098 SPIR; spire

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036953684.1 False 3520 mRNA 0.53 16 66473806 66495082
XM_036953685.1 True 3482 mRNA 0.53 16 66473814 66495082

Neighbor

gene id symbol gene type direction distance location
adat1 adat1 coding upstream 12929 66434480 ~ 66460877 (+)
LOC110494212 LOC106560906 coding upstream 51469 66375132 ~ 66422337 (+)
LOC110494222 LOC106560908 coding upstream 99051 66369790 ~ 66374755 (+)
LOC110494202 polr2c coding upstream 109821 66359803 ~ 66363985 (+)
LOC110494184 LOC106560911 coding upstream 115899 66354407 ~ 66357907 (+)
LOC110494252 LOC106560900 coding downstream 1877 66496959 ~ 66507990 (+)
LOC110494260 LOC106560901 coding downstream 13160 66508242 ~ 66529561 (+)
LOC110494278 chmp1a coding downstream 42873 66537955 ~ 66547328 (+)
LOC110494286 LOC106560898 coding downstream 54463 66549545 ~ 66552357 (+)
LOC110494295 fanca coding downstream 60465 66555547 ~ 66581651 (+)
LOC110494008 LOC106560923 non-coding upstream 474242 65975745 ~ 66031253 (+)
G172658 NA non-coding upstream 502848 65965873 ~ 65970958 (+)
G172637 NA non-coding upstream 544127 65929364 ~ 65929679 (+)
G172630 NA non-coding upstream 554588 65918913 ~ 65919218 (+)
G173804 NA non-coding downstream 35033 66530115 ~ 66530338 (+)
G173805 NA non-coding downstream 35370 66530452 ~ 66530710 (+)
G173806 NA non-coding downstream 36584 66531666 ~ 66531887 (+)
G173808 NA non-coding downstream 38376 66533458 ~ 66533659 (+)
G173835 NA non-coding downstream 40132 66535214 ~ 66535447 (+)
LOC110494096 LOC106561115 other upstream 207783 66262594 ~ 66266024 (+)
G172639 NA other upstream 537673 65935596 ~ 65936133 (+)
jph3 jph3 other upstream 832830 65593468 ~ 65648660 (+)
map1lc3b map1lc3b other upstream 937019 65531126 ~ 65536787 (+)
G170150 LOC106560975 other upstream 2595573 63873248 ~ 63878233 (+)
G173938 LOC106573687 other downstream 246738 66741820 ~ 66742213 (+)
LOC110494451 zfpm1 other downstream 460442 66900017 ~ 66995521 (+)
LOC110494472 utp4 other downstream 743808 67232278 ~ 67239902 (+)
hsbp1b LOC106561110 other downstream 991081 67486128 ~ 67488205 (+)
G176612 LOC100846954 other downstream 2365756 68860838 ~ 68861368 (+)

Expression


Co-expression Network