LOC110494252 (LOC106560900)


Basic Information

Item Value
gene id LOC110494252
gene name LOC106560900
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 66496959 ~ 66507990 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021569184.2
TGTGCGTAAGTGGGTGTGTCAAATGTAGGGTAGGCTAGCGCTTGGGTACGCACTCTGAAAAGAAGAAAAAGTTCATAATGAGTTTAGTCTGAAACCCGCCCCGGATTTGCAGGATGGCTCTCTGGACACGAGCGGACAAAAATGGTCAATTAGACCTTTTGCTCCGGGACCGCTGGATTCGGGTAGCGGGCGAATTGACCAGCGAGACTTTCACATTAACGGCCGAAGCAGAGATAAGCGGGCACGCGAACAACTTGCATTGCAACAATTCAGCGGACCTACGAAATGGAATATCAAACGGAAACGACCCAGGGTTAACGTCGGGAAATTCGAACCATGGTCAAATCTCGAACCCAGAACAACATCCGAACCATGGTGCGCTAGGACGAAGCAGTAGCCCAGCGCACGGGGGAATCAACAGGGGTCACTACGAAGGTTTTAGTGCAGGCTCTAGCAAGTATAATCGTGATAACGGTACGAACTCTGATTTTGGCAGCCCGGGGTCCAGTTACGGTAGTCCTAGATCTAGCTTCAGTTCCAGGCATGGCGAAACTTCCATCAATTTAGAATCCTGCGCATCGGAAGCTGTGCGTAAAGTTCGAGTTGTAAAACAAGAGTCGGGCGGGTTGGGGATCAGCATCAAGGGGGGTCGGGAAAACCGAATGCCCATCCTAATATCCAAGATCTTTCCCGGACTTGCAGCAGATCAGAGTCGAGCTCTTCGGGTCGGTGACGCGATACTGTCAGTCAATGGAAATGACCTCAGGGAGGCTACGCATGATCTAGCGGTGCAGGCTCTAAAAAAGGCCGGGAAAGAGGTTACGCTTGAGGTGAAATATATCAGGGAGGTTTCCCCACTGTTTAAGAAGCCGTCCTTGGTAGCAGACCTACCGTGGGATGGTGTGCGTCCTCAATCCCCCAACTTCAGTGGCAGTGAGGACTCGGGGTCCCCCAAACACAGCGGGGCCAAGGACCGAAAGGTCATCCCCCTCAAAATGTGCTTCATCAGCAGGAACCTGACTATACCTGACCTGGAGAACAGGCTCTTGGAACTGCACTCTCCTGATGGCCAGCACACGGTGGTGCTGCGCTGTAAGGACAGCCCCAGCGCCAACTCCTGGTTCACAGCCATCCACACCAACATTGCTTCCCTGCTGCCCCAGACTTTGGCCCACATCAACTCCTACCTGGGCTCCATCACCACGGGGTCACACCCCCAACTCAAACATATCAGCTGGCTGGCAGAACAGGTCCAGTTGGATGGTGGGCGGCACCAGTTTCGACCAATCGTCATGGCACTGACAGAGAAAGATATCCTGCTGTTTGAATCAGTCCCATGGAACCGTGAGGCATGGTCCACACCCCTGCTCACACACCCACTACTCGCCACAAGACTGGTGCACTCTGGCAGTGCCCGCAGTTCCCCGGCGCAGGGGGCAGACCTGGTGTTTGCCACTCGGACAGGTACAGGGCGAGGCATTGAATCCCATGTGTTCCGGGTGGAGACGCACTGGGACCTGTCCTCGTGGACCCGGGCGCTGGTGCAGGGGGGGCATTCCGCTGCAGAACTGATTAAGGAGATCTCCATTGgTTGCATGCTGAACAGGCAGGACGTTCGCCTCACGCTTCATTATGAGAAGGGCTTCACTGTGACCCGGGAGTCAAGGGAGCCTGCAGTGGGCACTGTGCTCTTCAGATACCCCTTCGAGAAGCTCAAGATGTCCACAGACGATGGGATCCGCAACCTTTACCTGGACTTTGGAGGTCCAGAGGGTGAAATGGTGTTTGACCTGCACTCTGGCCCCAAGCccgtggtgtttgttcttcattcCTTCCTGTCGGCCAAACTGTCTCGTCTGGGCCTGCTGACGTGAAGAGGCTGGGGTCAGGCACATCAACAAATATTCCTCTTTTTACTATGCATCATTCATCACAAGCGTTCCAATGTATATGTGCTCTTTTTATTGCATGTACTTTGTTCTTGTCAGGTGATTGAGTGATTTTTGTGAAGAACAGAGTATGTATTTGTTTATCTAAGTATGTGTAAATGCGATTGGGTTTGCAAGTTGTTGATTGAGTGTAAATGACCAAGAGCATACTGCCAGTGTGAATGGGTTTATACTTTTGCATTTGTGTTGGCTTTATAGTGCATGTTACCCAAAAACAGATAATCTAGCACATTATCTAAAATGATTTATAATCAGGATTGCCAACTGTGCCTTGTTACATGTAGTGATAAATGCTATTTTTATTGTGTAAAAGTTATTTGTCTTCAAAAGCTAATAGGTTTTAAAGCAAAGTAAGCCTTAAACATGCACAGCAATAGTATTATTCTTATACTGTAAACAtgttatttctgtattgtttatTCTTTGTATGTATATCCTATGTTTAGCATGACTCGACTATGGAAAGAGTTATCTTATTTTGGAGCATTTACAAAATCACGGTGTAACACCAGTGACCCCTATGTTACCTGCCTCAGACACCCTTCCCTCCTGTAGGCTAGCCACACCGCCAAACCATTGTCCCATGCTGCCTGAGAACACCACTTCCCTTTACCACTCCATTCTGCATTGGCCTTAAGCCAAGTCTTTCTATTAGAGTTCATGATATGAGGTCATACCTAAGCTTCTCTACCTTTCTACTCTCTTCTTTTTCTGTGTTTCCTGTGGAAGTTCCTCATACACACCATGCAAACATGATATGTACTGTCAATATGCATCCACAGTAAAGTCCCTGATGGGTCTGGGTCATGTTTTTGCCCGTATACTCCATCATGGTCATATTACATAATTAAAATAAGCAAAATACTTAAAGAACGTTCAAAGATGTTCATTCAGCACTATGATATCTGGGAAAATGTCATTTCAGTTGCATTATGGCTCATTTGTCTCAAGCCTTTTGTCTCATCTTCAAAACAGGCTTCAGGTCCAGTTAGTAAAAGCTTTGGATACTTTTAATAGCACAAATAGGATGCAATTATTTTGTTTTATCCCTGTGTAAGCTTATCATGCTGTATGTTACCACTGGCTCTGATTGCTACATTATGTCATGGCTCTTATTCGGACCCTGCCTGACCACATGATCCCCCAGCTTGACTTAATATGTAAGCAGATACTGTAAGTGCCTAGTGGATGCTGCCAATTGTATGTCTGAACTCTATCCCACTTCAGTCTCTGTACTTTTAATAATTTGTAGGTATCAATACAGATCTGTCaaacattgtttaaaaaaaaaaatgtttatcatATCTTTCTTCCATTTTGTTTCGAACAATGTACTGTTACTGCgaagcattttttttaaaagaaagaGTGTTGAACCAAATGTATCTGTGGTAGCTTTGCGTTTGACACAATCATTTAGAAGGACAGCATTGAAGAAACATTGCTGCGGCAAACCTGTTACATGCTAAGAATTTTAGACTTCCAAGCCTGCACTCAAATATATGCAATGTATGATCATCTAAAATGTAAATATCTATAAGAATAAAATCTGTTAATGCCCAGCTGTAA

Function

NR:

description
beta-2-syntrophin-like

GO: NA

KEGG:

id description
K24064 SNTB; beta-syntrophin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021569184.2 True 3518 mRNA 0.46 7 66496959 66507990

Neighbor

gene id symbol gene type direction distance location
LOC110494247 LOC106560903 coding upstream 1877 66473806 ~ 66495082 (+)
adat1 adat1 coding upstream 36082 66434480 ~ 66460877 (+)
LOC110494212 LOC106560906 coding upstream 74622 66375132 ~ 66422337 (+)
LOC110494222 LOC106560908 coding upstream 122204 66369790 ~ 66374755 (+)
LOC110494202 polr2c coding upstream 132974 66359803 ~ 66363985 (+)
LOC110494260 LOC106560901 coding downstream 252 66508242 ~ 66529561 (+)
LOC110494278 chmp1a coding downstream 29965 66537955 ~ 66547328 (+)
LOC110494286 LOC106560898 coding downstream 41555 66549545 ~ 66552357 (+)
LOC110494295 fanca coding downstream 47557 66555547 ~ 66581651 (+)
vps9d1 LOC106560896 coding downstream 78409 66586399 ~ 66611590 (+)
LOC110494008 LOC106560923 non-coding upstream 497395 65975745 ~ 66031253 (+)
G172658 NA non-coding upstream 526001 65965873 ~ 65970958 (+)
G172637 NA non-coding upstream 567280 65929364 ~ 65929679 (+)
G172630 NA non-coding upstream 577741 65918913 ~ 65919218 (+)
G173804 NA non-coding downstream 22125 66530115 ~ 66530338 (+)
G173805 NA non-coding downstream 22462 66530452 ~ 66530710 (+)
G173806 NA non-coding downstream 23676 66531666 ~ 66531887 (+)
G173808 NA non-coding downstream 25468 66533458 ~ 66533659 (+)
G173835 NA non-coding downstream 27224 66535214 ~ 66535447 (+)
LOC110494096 LOC106561115 other upstream 230936 66262594 ~ 66266024 (+)
G172639 NA other upstream 560826 65935596 ~ 65936133 (+)
jph3 jph3 other upstream 855983 65593468 ~ 65648660 (+)
map1lc3b map1lc3b other upstream 960172 65531126 ~ 65536787 (+)
G170150 LOC106560975 other upstream 2618726 63873248 ~ 63878233 (+)
G173938 LOC106573687 other downstream 233830 66741820 ~ 66742213 (+)
LOC110494451 zfpm1 other downstream 447534 66900017 ~ 66995521 (+)
LOC110494472 utp4 other downstream 730900 67232278 ~ 67239902 (+)
hsbp1b LOC106561110 other downstream 978173 67486128 ~ 67488205 (+)
G176612 LOC100846954 other downstream 2352848 68860838 ~ 68861368 (+)

Expression


Co-expression Network