Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110494260 |
| gene name | LOC106560901 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048566.1 |
| NCBI id | CM023220.2 |
| chromosome length | 103806877 |
| location | 66508242 ~ 66529561 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| vacuolar protein sorting-associated protein 4A-like isoform X2 |
| id | name | namespace |
|---|---|---|
| GO:0008152 | metabolic process | biological_process |
| GO:0005524 | ATP binding | molecular_function |
| GO:0017111 | nucleoside-triphosphatase activity | molecular_function |
| id | description |
|---|---|
| K12196 | VPS4; vacuolar protein-sorting-associated protein 4 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036953694.1 | False | 3491 | mRNA | 0.45 | 12 | 66508242 | 66529561 |
| XM_021569205.2 | False | 2846 | mRNA | 0.44 | 11 | 66508244 | 66529561 |
| XM_036953707.1 | False | 2630 | mRNA | 0.44 | 11 | 66516421 | 66529561 |
| XM_021569214.2 | True | 2849 | mRNA | 0.45 | 11 | 66516635 | 66529561 |
66,492,000
66,496,000
66,500,000
66,504,000
66,508,000
66,512,000
66,516,000
66,516,000
66,520,000
66,524,000
66,528,000
66,532,000
66,536,000
66,540,000
NC_048566.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110494252 | LOC106560900 | coding | upstream | 252 | 66496959 ~ 66507990 (+) |
| LOC110494247 | LOC106560903 | coding | upstream | 13160 | 66473806 ~ 66495082 (+) |
| adat1 | adat1 | coding | upstream | 47365 | 66434480 ~ 66460877 (+) |
| LOC110494212 | LOC106560906 | coding | upstream | 85905 | 66375132 ~ 66422337 (+) |
| LOC110494222 | LOC106560908 | coding | upstream | 133487 | 66369790 ~ 66374755 (+) |
| LOC110494278 | chmp1a | coding | downstream | 8394 | 66537955 ~ 66547328 (+) |
| LOC110494286 | LOC106560898 | coding | downstream | 19984 | 66549545 ~ 66552357 (+) |
| LOC110494295 | fanca | coding | downstream | 25986 | 66555547 ~ 66581651 (+) |
| vps9d1 | LOC106560896 | coding | downstream | 56838 | 66586399 ~ 66611590 (+) |
| LOC110494358 | LOC106560893 | coding | downstream | 127283 | 66656844 ~ 66665610 (+) |
| LOC110494202 | polr2c | non-coding | upstream | 144772 | 66359803 ~ 66363985 (+) |
| LOC110494008 | LOC106560923 | non-coding | upstream | 508678 | 65975745 ~ 66031253 (+) |
| G172658 | NA | non-coding | upstream | 537284 | 65965873 ~ 65970958 (+) |
| G172637 | NA | non-coding | upstream | 578563 | 65929364 ~ 65929679 (+) |
| G172630 | NA | non-coding | upstream | 589024 | 65918913 ~ 65919218 (+) |
| G173804 | NA | non-coding | downstream | 554 | 66530115 ~ 66530338 (+) |
| G173805 | NA | non-coding | downstream | 891 | 66530452 ~ 66530710 (+) |
| G173806 | NA | non-coding | downstream | 2105 | 66531666 ~ 66531887 (+) |
| G173808 | NA | non-coding | downstream | 3897 | 66533458 ~ 66533659 (+) |
| G173835 | NA | non-coding | downstream | 5653 | 66535214 ~ 66535447 (+) |
| LOC110494096 | LOC106561115 | other | upstream | 242219 | 66262594 ~ 66266024 (+) |
| G172639 | NA | other | upstream | 572109 | 65935596 ~ 65936133 (+) |
| jph3 | jph3 | other | upstream | 867266 | 65593468 ~ 65648660 (+) |
| map1lc3b | map1lc3b | other | upstream | 971455 | 65531126 ~ 65536787 (+) |
| G170150 | LOC106560975 | other | upstream | 2630009 | 63873248 ~ 63878233 (+) |
| G173938 | LOC106573687 | other | downstream | 212259 | 66741820 ~ 66742213 (+) |
| LOC110494451 | zfpm1 | other | downstream | 425963 | 66900017 ~ 66995521 (+) |
| LOC110494472 | utp4 | other | downstream | 709329 | 67232278 ~ 67239902 (+) |
| hsbp1b | LOC106561110 | other | downstream | 956602 | 67486128 ~ 67488205 (+) |
| G176612 | LOC100846954 | other | downstream | 2331277 | 68860838 ~ 68861368 (+) |
