LOC110494278 (chmp1a)


Basic Information

Item Value
gene id LOC110494278
gene name chmp1a
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 66537955 ~ 66547328 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021569225.2
CTTCAGCAACAGAAACGCCTATCTCACGTGATCCGTTCTGAACCAGGAAGAGTGTCGTCATACACGGACATCTATACAATAGGGCAATTAGCTCATTtgcaaagtaaaacatttttttttaggtGAAGTGGAACTCAAATACATGCGGACATGGATGACACACTCTTCCAACTGAAGTTTACAGCAAAACAGCTTGAGAAACTTGCCAAAAAGGCAGAGAAGGATTCAAAATCTGAGCAAGCCAAAGTTAAAAAGGCTCTTCAGTTGAAGAATGTGGACGTTGCCAGAGTGTATGCAGAGAATGCCATCCGTAAGAAGAACGAGGGCCTTAATTGGTTGCGCATGGCATCTCGAGTTGATGCTGTAGCCTCCAAGGTCCAGACTGCAGTCGCTATGAAGGCGGTCACAAAGAATATGACGCAGGTCACCAAGGCACTCGACAAGGCACTGGGTTCCATGGACCTGCAGAAGGTGTCTGCTGTCATGGACAAGTTTGAGACACAGGTCCAGAACCTGGATGTTCACACCTCTGTGATGGAGGACTCGATGAGCTCGGCCACCACGCTGACCACGCCCCAAGACCAGGTGGATGACCTCATCCTCCAGATAGCAGAGGAGGGTGGTCTGGAGGTGATGGACCAGCTCAGCCAGGTGCCTGCAGGTGCCACCTCACTGGGAGAGAGCTCGTCACGCTCACAGCACGAGAAGGAGGACCAGCTGTCCCGCAGGTTGGCAGCGTTGCGGAACTGAAGATATATCTTGGGTATTTGCGAGACAGATGGAGGCTTGACAGCTGCTTGGGAACAGACAGCGGGGAGCTGTGTGACTCTATCGAACTGTTCTTATCGTGATGACCTAATGAGCCTATTGATTTCCATTCCCACTTCTatttatatacacactcacactgtgTTGCTGAATATACCACCTGAGAAGGCATGGgtctctcctttgtctctctgtccatctctttctctgttgcACAACAATCTATTTTCCCCACCTCTGGTTTTCCCTCTCCCATatcagtctttctgtctctcactcttgtCTTCTCTCCTTCAGGGCTCCCTTAAATATTCCCCTTGGTTGGTTAGTTCTTGTGAATTTTGGTACATTGCCACTtgagaattttttttttgtatgtatATTTGAATGGGAGGGTTTTACAAAATATATAAATCCTATAGTGGAACGGGGTGTTTTAAAACAGACATATTCATGTATTATAAGCTTGGACCCCTGGCACTTATTGGGTGTTGTATTTCAAATGTGGGGTTGTCtttgtttttatatttaatatattttgttTTCTATTCTCTACCGGTCAGATGGAAGGAGTAAAACACAGGTTATCTTCAACACAGTGTAAAGGGGAAGCCTTCTTCTACCAAACAGACCATCAATATGAGTGCTCTGATGTATACCAACTTTTCCACAGTTTGACAACACAAAGAAAGTcaagacaccacacacactacttctTCTTAACTCCTATGAGAAATTATCCTTTGACATAATGTAACAATTTACATAATGTAAGCATTAGTTATATACTGTACAGGGAGGACAATTCTcagtcgttttttttttttaagcagtcAAATTAACTACTTtttgtttctttatttctcttAATCTTTTGCTAAATCATACCTATTTGCTTTGAATATGTACGCCTTATTGGGATGCAGGTATTTGCGTAGGTGCTTCTCCTCAGTGCCTGAATTAAACTAGTTCTAGTGATTGATCCTATGTAGGTTATATGTCAGCATATAATAAGGATTCCCCCTTTCTGTACCCATCAAACCAGAAATGTGGCTGCTGTAGCTACAGTAAGACATTTTGGGAATCATTTTCATTTTTACAGGGAGAGGTTTATTTATACTCCAATGTATATTATCTTGTGGAAATAAAATAAAAGCCCTCTGATATCAAAA

Function

symbol description
chmp1a Acts upstream of or within cerebellum development. Predicted to be located in endosome; membrane; and nuclear matrix. Predicted to be part of ESCRT III complex. Predicted to be active in multivesicular body. Human ortholog(s) of this gene implicated in pontocerebellar hypoplasia type 8. Orthologous to human CHMP1A (charged multivesicular body protein 1A).

NR:

description
charged multivesicular body protein 1a-like

GO:

id name namespace
GO:0021549 cerebellum development biological_process
GO:0015031 protein transport biological_process
GO:0010008 endosome membrane cellular_component

KEGG:

id description
K12197 CHMP1, VPS46, DID2; charged multivesicular body protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021569225.2 True 1940 mRNA 0.43 7 66537955 66547328

Neighbor

gene id symbol gene type direction distance location
LOC110494260 LOC106560901 coding upstream 8394 66508242 ~ 66529561 (+)
LOC110494252 LOC106560900 coding upstream 29965 66496959 ~ 66507990 (+)
LOC110494247 LOC106560903 coding upstream 42873 66473806 ~ 66495082 (+)
adat1 adat1 coding upstream 77078 66434480 ~ 66460877 (+)
LOC110494212 LOC106560906 coding upstream 115618 66375132 ~ 66422337 (+)
LOC110494286 LOC106560898 coding downstream 2217 66549545 ~ 66552357 (+)
LOC110494295 fanca coding downstream 8219 66555547 ~ 66581651 (+)
vps9d1 LOC106560896 coding downstream 39071 66586399 ~ 66611590 (+)
LOC110494358 LOC106560893 coding downstream 109516 66656844 ~ 66665610 (+)
LOC110494385 cotl1 coding downstream 130426 66677754 ~ 66688505 (+)
G173835 NA non-coding upstream 2508 66535214 ~ 66535447 (+)
G173808 NA non-coding upstream 4296 66533458 ~ 66533659 (+)
G173806 NA non-coding upstream 6068 66531666 ~ 66531887 (+)
G173805 NA non-coding upstream 7245 66530452 ~ 66530710 (+)
G173804 NA non-coding upstream 7617 66530115 ~ 66530338 (+)
G173843 NA non-coding downstream 65316 66612644 ~ 66614161 (+)
G173844 NA non-coding downstream 67045 66614373 ~ 66615201 (+)
G173840 NA non-coding downstream 68037 66615365 ~ 66617682 (+)
G173868 NA non-coding downstream 73712 66621040 ~ 66621275 (+)
G173869 NA non-coding downstream 74264 66621592 ~ 66622003 (+)
LOC110494096 LOC106561115 other upstream 271932 66262594 ~ 66266024 (+)
G172639 NA other upstream 601822 65935596 ~ 65936133 (+)
jph3 jph3 other upstream 896979 65593468 ~ 65648660 (+)
map1lc3b map1lc3b other upstream 1001168 65531126 ~ 65536787 (+)
G170150 LOC106560975 other upstream 2659722 63873248 ~ 63878233 (+)
G173938 LOC106573687 other downstream 194492 66741820 ~ 66742213 (+)
LOC110494451 zfpm1 other downstream 408196 66900017 ~ 66995521 (+)
LOC110494472 utp4 other downstream 691562 67232278 ~ 67239902 (+)
hsbp1b LOC106561110 other downstream 938835 67486128 ~ 67488205 (+)
G176612 LOC100846954 other downstream 2313510 68860838 ~ 68861368 (+)

Expression


Co-expression Network