LOC110494333 (LOC106560895)


Basic Information

Item Value
gene id LOC110494333
gene name LOC106560895
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 66629559 ~ 66633818 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021569301.2
TTAAAGGTCCCGGGTGGTACAAAGTACTCTCCATAGACTCAGACTGTCAGCGGTGTTTAAATTCCTTTGTACAGTCCTTTGGACCTATTCAGCATGTCAAACGCGGACAGAGTTGTGTTAGCTCTCGGTGGAGCAGGAACAGTGGGCTCTGGAATAGTTAAAGCACTCCTCGACAAAGGTTTCAAGGTGGCTGTCATCTCCAGAGACAACAGCAGATTAGAGAAGCTCAGGGGGTTTGTTTCGCCCTCCGTCCGAGACAACCTCACTACCCTAGTCGGGAATGTTGGTTCAGAGGAGGGGGCAGAGGTGGTCAAGCACGCCCTTCTGAAGTCTGTTGGCAAGGTGACAGACATTGTGTCATCTCTGGGATTCAGCTGGTGGCAGGGTGGGCCACCACATACCCAGACTCTGAAAGAACTACACTGGGTGATTGAGACATTGCTGTTTAGCACCTTTGTATCATGGAAGGTCTTCTTTCCGCTGGTGAGAGACGACCCCAACTGCACCTACACCTTTATCACAGGTGGTGCTGGAGAGAAGCTGTTGATGCCAGGTACAGGGTTCCTGACTGTTGGCGCCGCCAGCACCCTGGCATTCTGTCAGGTACTACGAGAGGAGTACCCAGAAGTGCCCTGCAAACTCAACCAGGTAAAGATCAACACAGGTGTGGCCCCTCCAGAGCGCATGGCTCCTGGTTACCTGAACCACCTGGACCTTGGTGAGGCTGTGGCCACGTTGGTGGAGAGAAAGAACACCACCCACACAGTGTTCCCTGTCAACTCCCCGGCAGACTTAAAAAAAGTCATTCTCGGGGGTAACCTTTAAGGCTTCCCCGCTCTGTCATAAGTCCCTGCAGACTCTCAACTATAGTGCTGGAGTCATTCCACATCCATTTTACTGTATAGTCAGGAATGTGCTTTTCTTTGCATGCATTATAACCCTGTAAGGAAGATGCCAAGCTTTATGTAAATTCATGCCAGAATCTGCATAGTCCTTAATTGTTCCAGTGTTCATGCACTAATAACCACATAATGCACTACCTTCCAGGATGTCAATGGAACTGTGCAGGTGCATAGTAGATTATTTAGATGTGCTCTATTGGGAAAGTGCAGGATGACTCTGAGATGAGGCAGCAAAAGACGGTGGGGGGACAGGGAGGGTAGACGGTAGGGGCGGCAATGGGGGGCTTGGCACATTTCTGTCCCCCTAGCGTGACTCTCTGTCCTGTTCACAGGCACCCTCCACCCAACCCCTTTATCTGGGACAGCACATCCCATAAATAAACAATGCGGTGGGAGGTCTGATAGAGGGAAAATAAATATCACAGAGTGCATTGTCTTTGTTTTACTGTTCTGTTAATGGCATACATGCTTAAGCAACTAGAATGTATATTTGTCATGCCAATAAAGAAACCTGAATTGTGTTAAGGCAACGCTAACTAAATGAGGGGGGCTTATGCAGTTGGGTCAGAG

Function

NR:

description
uncharacterized protein LOC109867258

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021569301.2 True 1472 mRNA 0.49 6 66629559 66633818

Neighbor

gene id symbol gene type direction distance location
LOC110494316 NA coding downstream 42976 66582120 ~ 66586583 (-)
LOC110494195 LOC106560909 coding downstream 275021 66343630 ~ 66354538 (-)
LOC110494122 LOC106560915 coding downstream 329922 66277821 ~ 66299637 (-)
si:dkeyp-50b9.1 LOC106560918 coding downstream 406209 66210436 ~ 66223350 (-)
LOC110494064 NA coding downstream 483290 66144846 ~ 66146269 (-)
LOC110533844 NA coding upstream 3335 66637153 ~ 66638202 (-)
LOC110494342 LOC106560894 coding upstream 7244 66641062 ~ 66643589 (-)
LOC110494363 klhl36 coding upstream 34056 66667874 ~ 66678769 (-)
LOC110494415 LOC106560887 coding upstream 101363 66735181 ~ 66774321 (-)
LOC110494421 LOC106560888 coding upstream 141416 66775234 ~ 66790323 (-)
G174447 NA non-coding downstream 7555 66621575 ~ 66622004 (-)
G174437 NA non-coding downstream 75647 66553555 ~ 66553912 (-)
G174436 NA non-coding downstream 76173 66553058 ~ 66553386 (-)
G174435 NA non-coding downstream 77203 66551894 ~ 66552356 (-)
G174434 NA non-coding downstream 82241 66546120 ~ 66547318 (-)
G174475 NA non-coding upstream 18713 66652531 ~ 66654391 (-)
G174508 NA non-coding upstream 61475 66695293 ~ 66695679 (-)
G174470 NA non-coding upstream 99419 66733237 ~ 66735127 (-)
G174580 NA non-coding upstream 217683 66851501 ~ 66851815 (-)
G174584 NA non-coding upstream 229883 66863701 ~ 66863937 (-)
G173696 LOC106560906 other downstream 238793 66375226 ~ 66390766 (-)
G173675 NA other downstream 291173 66335412 ~ 66338386 (-)
G173431 NA other downstream 707330 65921850 ~ 65922229 (-)
G173370 LOC106560927 other downstream 790485 65833341 ~ 65839074 (-)
G174505 NA other upstream 58590 66692408 ~ 66692850 (-)
G177487 NA other upstream 2957317 69591135 ~ 69591722 (-)
LOC110494902 LOC106560839 other upstream 3059791 69648833 ~ 69767366 (-)
LOC110501848 NA other upstream 3926704 70552263 ~ 70642587 (-)
fam169b fam169b other upstream 4135340 70769140 ~ 70773282 (-)

Expression


Co-expression Network