XLOC_020675


Basic Information

Item Value
gene id XLOC_020675
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 733244 ~ 735244 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00042236
TGGAGCCTTTATATGTTTTGGTTAATTGTTTATCCTGAGATTACAAATCTCTAGCAGTTTTCCTGCTAAAATAAAGGTTCCAATTAAAAATAggtaaacaaaaatgtaaatgatgaaACACAAGCTTCATAATGTTTAGCTTTGTTGAACCTAATATTTTTTCTCTAAACAATCCCATAATTCATCagtcacgcgcgcacacacacacacacactgacagcagAGTTTACGAACAGCAGCTTTTGTTTACTGTGTAAATCcacataaatctctgaatcataTTAGTAGATCACATTATGGTCTTCATCTGAATCGCAATATTTACAGTGATTAAACGCCAGAGAACAAAACAGCATCGGCTATGACGCTGCCTGATGATGTCACCACACCCAGTATTCTCCTATTGGCAGTTGGGGCGTGACATCATCGGCTGATGACAGACATATAAAGTGCTTTGATTGGCTGATCGGTGAATCTCCAGAGGGACGTCAGAATTTCAGCGTGACGACATATTCATGACGAAAAAACCCTTTCTGCGCATATTACCGTAACGCAAAGATTTTCATACTCATTACCGTAACGAGAAAAACACGCTTATTATTGGTGCAAAACTAAGTATTTCTAAATGATGCTGTAATACTGAAAAATGGTCTCCAAGTCAATACCGTACTCTAGAAAACTAATAATTCTCATCACTGTATTACACCACATTTGTCATcactgtaataaacaaacaaaaaactttatGAAAATATTCTCATTACCGCTACATAAACATTTACCACAATAAGGAAAATATTTTGGCCAAAATTATTCTTCTCATTACAgatcacaaaaaaattatttttgtactGATTACTGATTACCGTCATGAAGTATGTTCATTAACACTACACAAAATAAACGCATATACCATAAAAtggaaaacatttgtaaataaacattctTCTCATTACCGTAATGCACCAATATATTATTCTCATTACTATTGGGAAAATATTAGCATTAACGttacacaaaataaacatttactataatatggaaaatattctgaACTAAAATGATCATTCTCATTACCGTAATACACCAAAAAAAGTCAGTCATCAGAATCGTGTAAAAATTTGATTATTACGctacacaaaataaacattttccaaAATGATTTTTCTCACCaccataatgaaaaataaattattgtaattAGTCATGAAAATGTTTTCGTTAACActacacaaaataaacatttaccataaaatggaaaatatttataaCTAAAGGTATTCTTCTCATTACCGTAACACACCAATATATTATTCTCATTATCTTTGTGAAATATTATCATTAACGTTACgctaaataaacatttaccataatatggaaaatattttaaacaaaatccaCTGTTTTCATTACAGCAATACAGCAAGAAATTATTGTTCTCATTACCGCtgcacaaaataaacatttaccatAATAGGAAAAATATTTGGGCCAAAATTATTTTTCTCATTACCGTAatacacaaaaaatattattctGATTACCGTCatgaaaatattttcattaacactacacaaaataaatgcatataccATAAATTGGAAAATATTTGTAACTAAACTTATTCTTCTCATTACCGTGACGCACCAATATATTATTCTCATTATCATTGTGAAAACATTATCATTACtgttacaaaaataaacatttaccatAATATGGAGAATATTTTGGCCTGAAACCACAGTTTTTATAACCGCAATACAGCAAAAAAACTATTATTCTCACCTCCGCtgcacaaaataaacatttactataAAATGGAAAATATTCTAAACTAAAATGATCATTCTCATTACTGTAATACAGCAAAAAAATTACCATT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00042236 True 1885 lncRNA 0.30 2 733244 735244

Neighbor

gene id symbol gene type direction distance location
XLOC_020674 arl8a coding downstream 14629 710759 ~ 718615 (-)
XLOC_020673 NA coding downstream 28337 700213 ~ 704907 (-)
XLOC_020672 NA coding downstream 35740 659917 ~ 697504 (-)
XLOC_020671 apobec2a coding downstream 81525 641342 ~ 651719 (-)
XLOC_020670 srsf3b coding downstream 110277 613265 ~ 622967 (-)
XLOC_020676 NA coding upstream 4056 739300 ~ 760886 (-)
XLOC_020677 rbbp5 coding upstream 34757 770001 ~ 784110 (-)
XLOC_020678 TMEM263 coding upstream 77604 812848 ~ 817479 (-)
XLOC_020679 cry4 coding upstream 84412 819656 ~ 834106 (-)
XLOC_020680 dram2b coding upstream 121625 856869 ~ 866196 (-)
XLOC_020664 NA non-coding downstream 337344 392619 ~ 395900 (-)
XLOC_020657 NA non-coding downstream 417864 313710 ~ 315380 (-)
XLOC_020646 NA non-coding downstream 631797 101082 ~ 101447 (-)
XLOC_020684 NA non-coding upstream 283101 1018345 ~ 1023531 (-)
XLOC_020686 NA non-coding upstream 421186 1156430 ~ 1168291 (-)
XLOC_020687 NA non-coding upstream 446840 1182084 ~ 1182479 (-)
XLOC_020689 CU570769.4 non-coding upstream 494662 1229906 ~ 1230022 (-)

Expression


Co-expression Network