LOC110494342 (LOC106560894)


Basic Information

Item Value
gene id LOC110494342
gene name LOC106560894
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 66641062 ~ 66643589 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021569312.2
ATAATTGACCAGGAAGTGATTATCTTCAAGGCATTACACGCTcgtgtgtatttttatgaatttataaaCTACAGTATTAGAATGGCATCGCTGTTGCTACTGCAATCAATATAATAAACGTTTTATGTTATGGAAACGTGTAACACTTGCATGGGATAGGATACTCGAGTTCATTGTATTTGCGTGGTTTCAGTATCGTGTGCAGTGAGCTAACTAACTGCTGTAGCTATTAGCTTACTAGCTAGGTTAGCTGCTCAACATGTAAACTTGTCATGTGATAATGTGAAATTATTTTGGTCATACCCGGGTCACAACATATTGATTTGGACTGTAGCAGACTGACTAGTGCCAGGATTGAACCCAGACATGAATATAACTGTGTGCTCTTCAGCGCTGTTGACTCGTGCTTACAGAATGTGTATTTCAAAAGCCCCACGGCCCCATTCCACTGGATCCATTGGCTGGGTAGTCCCTGTCTGCATGTCCCCCAACCGGTCTTATTCTACAAACATCAAGGTTCgttcctacctacagtacatgaagCGGAAGATCAAGCCCCCACCAAGTCCTCCATACCCCCATGTCTGCCAAGTGGGTGAACCGGTGCTGCGAGCCAAGGCTGCAGCGGTGGACCCTGGGGCAGTACAGGGTCCGGAGGTTCAGGCGGTGATCCACAGCATGGTAAAGGTGATGCGGAAATTTGAATGTGTGGGACTGAGTGCACCTCAAGTTGGAGTGCCACTTCGTATCTTAGCTCTGGAGTTCCCAGAGCGCATGTTGGAGGACAGCTTGCCTGCTGCACGTGAAGCCCGCGGTCTGACCACTGTGCCTCTGCGGATCTTTATCAACCCACAGCTGCGAGTCCTAGATGGACGCACAGTTCTGTTCCAGGAAGCCTGTGAGAGCATCTCGGGGTTCTCGGCCACTGTTCCACGCTACCTCTCTGTGGAAGTCTCAGGCTTGAATGAGAAGGCAGAGCCTGTGACCTGGCAAGTGAGCGGCTGGCCCGCACGCATCCTACAGCATGAGATGGATCACTTGGATGGAGTCCTATACATTGACCGCATGGACAGTAAAACATTCATTAACGTGAACTGGGCAGCAAAGAATGAGTAGCCGTTTCAAACAAACCTAGTCACCCTGATTGACCCACAGCACTTAAAGACAGTTCTTGGACATAACATGGCAGCAGATAAGACCATTCTGAAACCTTTCCTTTGACTGATTAAACTGTAAATTCGTAataataaataatgtatttatgaagGCAGATTTATAGTCTGGATGAATATTCAATTATCTTGCaagttgtttaatttgtgtgAACATTTTTAAAGGAACTGAAATATTGACTAAACTGTGGTGCCACCAGATGGCTGACCAAAGAGAAAATATTGCAGAATGTTGGAAGTAAAGAAAAAACTGAAAAGCTTTTATATGCTGTAGTATCCTACATTTAAACATCAACATCTAAAGAGCACAGCACGAGAGACATCTGTTCCTATTTTAAATCCCATTTTAATTCAAATATCTGcagaaaaaataacaaataatgaaaACAAACACCTTAACCTCAAACCACATTTGGCAGTATTACCTTAAATCTTGACCTGCAACATTTAATCACTGGTTTCTCCTAATTTCTCACTGGTTTCTCCTAACATAAGTTTAAGGCTCCAGATCTAATCAAATTTAAGGACCTACCAAGAGCCcaaaatagaaaaatatacaaGAGTTTGGCACTTCACTTTTAATCCCTGGCTGGGCTAAAGCTAATGTATATATTATTACAAATTAAGGGTATTTTGAATTGAAGGCAACACGTACTTTGCCttaaaagtattcacaccccttgacttattccacattttgttgtgttacagcctgaatttaaaacggATTGAGTGtcatcactggcctacacacaatgtcccataatgtcaaagtggaattaggtttatttttttacttttacaaattaataaaaaatgacaagCT
>XM_021569328.2
TGAAGACCTGACGAAATAATTGACCAGGAAGTGATTATCTTCAAGGCATTACACGCTcGACTGTAGCAGACTGACTAGTGCCAGGATTGAACCCAGACATGAATATAACTGTGTGCTCTTCAGCGCTGTTGACTCGTGCTTACAGAATGTGTATTTCAAAAGCCCCACGGCCCCATTCCACTGGATCCATTGGCTGGGTAGTCCCTGTCTGCATGTCCCCCAACCGGTCTTATTCTACAAACATCAAGGTTCgttcctacctacagtacatgaagCGGAAGATCAAGCCCCCACCAAGTCCTCCATACCCCCATGTCTGCCAAGTGGGTGAACCGGTGCTGCGAGCCAAGGCTGCAGCGGTGGACCCTGGGGCAGTACAGGGTCCGGAGGTTCAGGCGGTGATCCACAGCATGGTAAAGGTGATGCGGAAATTTGAATGTGTGGGACTGAGTGCACCTCAAGTTGGAGTGCCACTTCGTATCTTAGCTCTGGAGTTCCCAGAGCGCATGTTGGAGGACAGCTTGCCTGCTGCACGTGAAGCCCGCGGTCTGACCACTGTGCCTCTGCGGATCTTTATCAACCCACAGCTGCGAGTCCTAGATGGACGCACAGTTCTGTTCCAGGAAGCCTGTGAGAGCATCTCGGGGTTCTCGGCCACTGTTCCACGCTACCTCTCTGTGGAAGTCTCAGGCTTGAATGAGAAGGCAGAGCCTGTGACCTGGCAAGTGAGCGGCTGGCCCGCACGCATCCTACAGCATGAGATGGATCACTTGGATGGAGTCCTATACATTGACCGCATGGACAGTAAAACATTCATTAACGTGAACTGGGCAGCAAAGAATGAGTAGCCGTTTCAAACAAACCTAGTCACCCTGATTGACCCACAGCACTTAAAGACAGTTCTTGGACATAACATGGCAGCAGATAAGACCATTCTGAAACCTTTCCTTTGACTGATTAAACTGTAAATTCGTAataataaataatgtatttatgaagGCAGATTTATAGTCTGGATGAATATTCAATTATCTTGCaagttgtttaatttgtgtgAACATTTTTAAAGGAACTGAAATATTGACTAAACTGTGGTGCCACCAGATGGCTGACCAAAGAGAAAATATTGCAGAATGTTGGAAGTAAAGAAAAAACTGAAAAGCTTTTATATGCTGTAGTATCCTACATTTAAACATCAACATCTAAAGAGCACAGCACGAGAGACATCTGTTCCTATTTTAAATCCCATTTTAATTCAAATATCTGcagaaaaaataacaaataatgaaaACAAACACCTTAACCTCAAACCACATTTGGCAGTATTACCTTAAATCTTGACCTGCAACATTTAATCACTGGTTTCTCCTAATTTCTCACTGGTTTCTCCTAACATAAGTTTAAGGCTCCAGATCTAATCAAATTTAAGGACCTACCAAGAGCCcaaaatagaaaaatatacaaGAGTTTGGCACTTCACTTTTAATCCCTGGCTGGGCTAAAGCTAATGTATATATTATTACAAATTAAGGGTATTTTGAATTGAAGGCAACACGTACTTTGCCttaaaagtattcacaccccttgacttattccacattttgttgtgttacagcctgaatttaaaacggATTGAGTGtcatcactggcctacacacaatgtcccataatgtcaaagtggaattaggtttatttttttacttttacaaattaataaaaaatgacaagCT
>XM_036953795.1
TGAAGTATTCAAGGGAACCTGCTACATATGTACAAAACACAACCGATAAAAATATGGACTGTAGCAGACTGACTAGTGCCAGGATTGAACCCAGACATGAATATAACTGTGTGCTCTTCAGCGCTGTTGACTCGTGCTTACAGAATGTGTATTTCAAAAGCCCCACGGCCCCATTCCACTGGATCCATTGGCTGGGTAGTCCCTGTCTGCATGTCCCCCAACCGGTCTTATTCTACAAACATCAAGGTTCgttcctacctacagtacatgaagCGGAAGATCAAGCCCCCACCAAGTCCTCCATACCCCCATGTCTGCCAAGTGGGTGAACCGGTGCTGCGAGCCAAGGCTGCAGCGGTGGACCCTGGGGCAGTACAGGGTCCGGAGGTTCAGGCGGTGATCCACAGCATGGTAAAGGTGATGCGGAAATTTGAATGTGTGGGACTGAGTGCACCTCAAGTTGGAGTGCCACTTCGTATCTTAGCTCTGGAGTTCCCAGAGCGCATGTTGGAGGACAGCTTGCCTGCTGCACGTGAAGCCCGCGGTCTGACCACTGTGCCTCTGCGGATCTTTATCAACCCACAGCTGCGAGTCCTAGATGGACGCACAGTTCTGTTCCAGGAAGCCTGTGAGAGCATCTCGGGGTTCTCGGCCACTGTTCCACGCTACCTCTCTGTGGAAGTCTCAGGCTTGAATGAGAAGGCAGAGCCTGTGACCTGGCAAGTGAGCGGCTGGCCCGCACGCATCCTACAGCATGAGATGGATCACTTGGATGGAGTCCTATACATTGACCGCATGGACAGTAAAACATTCATTAACGTGAACTGGGCAGCAAAGAATGAGTAGCCGTTTCAAACAAACCTAGTCACCCTGATTGACCCACAGCACTTAAAGACAGTTCTTGGACATAACATGGCAGCAGATAAGACCATTCTGAAACCTTTCCTTTGACTGATTAAACTGTAAATTCGTAataataaataatgtatttatgaagGCAGATTTATAGTCTGGATGAATATTCAATTATCTTGCaagttgtttaatttgtgtgAACATTTTTAAAGGAACTGAAATATTGACTAAACTGTGGTGCCACCAGATGGCTGACCAAAGAGAAAATATTGCAGAATGTTGGAAGTAAAGAAAAAACTGAAAAGCTTTTATATGCTGTAGTATCCTACATTTAAACATCAACATCTAAAGAGCACAGCACGAGAGACATCTGTTCCTATTTTAAATCCCATTTTAATTCAAATATCTGcagaaaaaataacaaataatgaaaACAAACACCTTAACCTCAAACCACATTTGGCAGTATTACCTTAAATCTTGACCTGCAACATTTAATCACTGGTTTCTCCTAATTTCTCACTGGTTTCTCCTAACATAAGTTTAAGGCTCCAGATCTAATCAAATTTAAGGACCTACCAAGAGCCcaaaatagaaaaatatacaaGAGTTTGGCACTTCACTTTTAATCCCTGGCTGGGCTAAAGCTAATGTATATATTATTACAAATTAAGGGTATTTTGAATTGAAGGCAACACGTACTTTGCCttaaaagtattcacaccccttgacttattccacattttgttgtgttacagcctgaatttaaaacggATTGAGTGtcatcactggcctacacacaatgtcccataatgtcaaagtggaattaggtttatttttttacttttacaaattaataaaaaatgacaagCT

Function

NR:

description
peptide deformylase, mitochondrial

GO: NA

KEGG:

id description
K01462 PDF, def; peptide deformylase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021569312.2 False 1998 mRNA 0.42 3 66641062 66643381
XM_021569328.2 False 1730 mRNA 0.43 3 66641062 66643396
XM_036953795.1 True 1728 mRNA 0.43 3 66641062 66643589

Neighbor

gene id symbol gene type direction distance location
LOC110533844 NA coding downstream 2860 66637153 ~ 66638202 (-)
LOC110494333 LOC106560895 coding downstream 7244 66629559 ~ 66633818 (-)
LOC110494316 NA coding downstream 54479 66582120 ~ 66586583 (-)
LOC110494195 LOC106560909 coding downstream 286524 66343630 ~ 66354538 (-)
LOC110494122 LOC106560915 coding downstream 341425 66277821 ~ 66299637 (-)
LOC110494363 klhl36 coding upstream 24285 66667874 ~ 66678769 (-)
LOC110494415 LOC106560887 coding upstream 91592 66735181 ~ 66774321 (-)
LOC110494421 LOC106560888 coding upstream 131645 66775234 ~ 66790323 (-)
ces3 LOC100380756 coding upstream 210717 66854306 ~ 66859005 (-)
LOC110494458 LOC106573692 coding upstream 444638 67088227 ~ 67113877 (-)
G174447 NA non-coding downstream 19058 66621575 ~ 66622004 (-)
G174437 NA non-coding downstream 87150 66553555 ~ 66553912 (-)
G174436 NA non-coding downstream 87676 66553058 ~ 66553386 (-)
G174435 NA non-coding downstream 88706 66551894 ~ 66552356 (-)
G174434 NA non-coding downstream 93744 66546120 ~ 66547318 (-)
G174475 NA non-coding upstream 8942 66652531 ~ 66654391 (-)
G174508 NA non-coding upstream 51704 66695293 ~ 66695679 (-)
G174470 NA non-coding upstream 89648 66733237 ~ 66735127 (-)
G174580 NA non-coding upstream 207912 66851501 ~ 66851815 (-)
G174584 NA non-coding upstream 220112 66863701 ~ 66863937 (-)
G173696 LOC106560906 other downstream 250296 66375226 ~ 66390766 (-)
G173675 NA other downstream 302676 66335412 ~ 66338386 (-)
G173431 NA other downstream 718833 65921850 ~ 65922229 (-)
G173370 LOC106560927 other downstream 801988 65833341 ~ 65839074 (-)
G174505 NA other upstream 48819 66692408 ~ 66692850 (-)
G177487 NA other upstream 2947546 69591135 ~ 69591722 (-)
LOC110494902 LOC106560839 other upstream 3050020 69648833 ~ 69767366 (-)
LOC110501848 NA other upstream 3916933 70552263 ~ 70642587 (-)
fam169b fam169b other upstream 4125569 70769140 ~ 70773282 (-)

Expression


Co-expression Network