LOC110494358 (LOC106560893)


Basic Information

Item Value
gene id LOC110494358
gene name LOC106560893
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 66656844 ~ 66665610 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036953800.1
CAGTCTCCACCAATGAAGTGATGGGCAGGGTTCAACACCCATTTTCGGGGGCTTGCTATAAAGCTGGTTTATAACAGACTTAAGTACATATAGAGTATTTTGCCTGAATTCCTTCATTTGGAGTGTGAAATTATTTTGAGATTGTAAagTTGCAACATGGAGGACAATTCCTATGTGGTCAAAATGAATGGGAATGGTGTCAATGAGAATAATTCTCTCAATGGCGTCAATGGAAAAGGTCTTAATGGGAATGGTATCCAACATAAGACTGTGAAAGGCAGTGTTTATAAATCCAAGCAGAAGAGCCGCAGGCAGAGATGGAACATCCGGCCCTCAGAGATGTCAATCAACACATTGAATCCCATCCGTGCCATTGTGGACGGGATGAAGCTCACACCCAACCCCGAGAAGCCCATGATTGCTCTATCCATTGGGGACCCTACAGTGTTCGGGAACCTGCCTACCGATGAAAAAGTTACCCAGGCCTTGAAGGATGCCATTGACTCAAACAAATACAACGGCTATGCTCCGTCTGTTGGTTATCAGAAGAGCAGAGATGTGGTGGCAAACTTCTACAGTTGCCCCGAGGCCCCCTTGGAGGCAGAGGATGTGGTTCTGACCAGTGGCTGCAGCCAGGCTATAGATCTGGCCATCACGGTGCTGTGTAACCCTGGAGACAACATCCTAATCCCCTGCCCTGGATTCTCCCTCTACAAGACTTTGGCTGTGTCTCTGGGCATCCAGGTCAAACTGTACAACCTGCTGCCAGAGAAGTCTTGGGAGGTCGATCTTCAGCACATGGAAAGCCTGATCGATGACAGGACAACCTGCCTGATCATCAACAATCCTTCCAACCCTTGCGGCTCTGTCTACAGTAAAGAGCACCTAAAGAATGTCCTCTCTGTTGCCTCCAAAAATTGCATCCCAATCCTGGCTGATGAGATCTATGGTGACATGGTGTTTCCAGGTTGCAAGTACCAATCTATGGCGTCCCTCAGCAGTGATGTACCCATCCTGGCATGTGGCGGTCTGGCCAAGAGATGGTTGGTTCCTGGCTGGAGGATGGGCTGGATCCTCATTCATGACCGGAATCAAATCTTCGGGAAAGAGATTCGTCAGGGTTTGGTTAAGCTTAGCCAGAGGATTCTGGGAGCCTGCACCATTGTCCAGGGGGCGATAGAGAGCATCCTGAACGACACGCCCCAGGAGTTTTACTACAGAACCATCAGTTTCCTCAAGTCAAACTCAGAGATCTGTTTCTCTGAACTGTCCACTGTTCCTGGGCTGACCCCTGTGCTGCCAGCAGGAGCCATGTACCTCATGGTGGGGATTGAGATGGAACACTTCCCAGAGTTCCAGAATGATGTGCAGTTCACTGAGCATCTGGTGACTGAGCAGTCCGTCTTCTGCCTGCCTGCTACGGCATTTGAGTACCCAAATTACTTCCGGATCGTGGTGACCGTACCAGAGGAGATGATGGTGGAGGCATGTGCACGGATCCGGGAGTTTTGCCAGCGCCACTACAGACCCTGCAGCCAAGACAGCAACGAGCTGGACCAATGAGAGACAGcctgagagagaaggagggagaccaGAGAGTATGGATGTAGTAAGGGACAAAAGTGAATGTGAAAAAAAGAGAACGGGAAGAGAGCGGGTGAAAGAAAGAAGAGGAACTAGGGAAGAGGAGTGAGAAAATTATGTTGCACTGCAGGAGCAAAGGATTTAGTAAGAAAGAAGAGGAACTCGGGAAGAGGAGTGAGAAAATTATGTTGCACTGCAGGAGCAAAGGATTTAGTAATGTAATTGGTGGTCGTCCATCTTTGGTAACTTCAATTTATGAGCAGACCTGATATTTATATTTTGTACGGCCATTTTATGTTAAACTTACTTTGACTAATTATTTGGCTTCATGGTTGTACCAATTCTCAAGGCTCCAATGTTACTTTATATGTTGGGTCGACCAAAACCCCATTGGGCCTATAGAACCAGGGACCGGGGTTTTACCCACCCCTTTGTTCAAACCATGATGGGGTTAATGGTTGGGTTGATCCTACCAGGAAAACAAATGGAACTCAAGCACCAGCAGATTACATACAGTGCTTTCCATAGTCTGTgttacatactttttcttgctaGGATTATGATGCTCAACCAAAACCTTTGCTATCTACTTGTTAATCTATCTTCATGTAATAttgaatgttattttttttatgtgaAAAAGTTATTTAAACCAAAGTAAAGCTATGAAATACCTGTTTGTTTGTTGTGACTCATTAGCTCATGGTAATATAAAAACTAAAT
>XM_036953806.1
TACATATAGAGTATTTTGCCTGAATTCCTTCATTTGGAGTGTGAAATTATTTTGAGATTGTAAagCTGCAGTTGCAACATGGAGGACAATTCCTATGTGGTCAAAATGAATGGGAATGGTGTCAATGAGAATAATTCTCTCAATGGCGTCAATGGAAAAGGTCTTAATGGGAATGGTATCCAACATAAGACTGTGAAAGGCAGTGTTTATAAATCCAAGCAGAAGAGCCGCAGGCAGAGATGGAACATCCGGCCCTCAGAGATGTCAATCAACACATTGAATCCCATCCGTGCCATTGTGGACGGGATGAAGCTCACACCCAACCCCGAGAAGCCCATGATTGCTCTATCCATTGGGGACCCTACAGTGTTCGGGAACCTGCCTACCGATGAAAAAGTTACCCAGGCCTTGAAGGATGCCATTGACTCAAACAAATACAACGGCTATGCTCCGTCTGTTGGTTATCAGAAGAGCAGAGATGTGGTGGCAAACTTCTACAGTTGCCCCGAGGCCCCCTTGGAGGCAGAGGATGTGGTTCTGACCAGTGGCTGCAGCCAGGCTATAGATCTGGCCATCACGGTGCTGTGTAACCCTGGAGACAACATCCTAATCCCCTGCCCTGGATTCTCCCTCTACAAGACTTTGGCTGTGTCTCTGGGCATCCAGGTCAAACTGTACAACCTGCTGCCAGAGAAGTCTTGGGAGGTCGATCTTCAGCACATGGAAAGCCTGATCGATGACAGGACAACCTGCCTGATCATCAACAATCCTTCCAACCCTTGCGGCTCTGTCTACAGTAAAGAGCACCTAAAGAATGTCCTCTCTGTTGCCTCCAAAAATTGCATCCCAATCCTGGCTGATGAGATCTATGGTGACATGGTGTTTCCAGGTTGCAAGTACCAATCTATGGCGTCCCTCAGCAGTGATGTACCCATCCTGGCATGTGGCGGTCTGGCCAAGAGATGGTTGGTTCCTGGCTGGAGGATGGGCTGGATCCTCATTCATGACCGGAATCAAATCTTCGGGAAAGAGATTCGTCAGGGTTTGGTTAAGCTTAGCCAGAGGATTCTGGGAGCCTGCACCATTGTCCAGGGGGCGATAGAGAGCATCCTGAACGACACGCCCCAGGAGTTTTACTACAGAACCATCAGTTTCCTCAAGTCAAACTCAGAGATCTGTTTCTCTGAACTGTCCACTGTTCCTGGGCTGACCCCTGTGCTGCCAGCAGGAGCCATGTACCTCATGGTGGGGATTGAGATGGAACACTTCCCAGAGTTCCAGAATGATGTGCAGTTCACTGAGCATCTGGTGACTGAGCAGTCCGTCTTCTGCCTGCCTGCTACGGCATTTGAGTACCCAAATTACTTCCGGATCGTGGTGACCGTACCAGAGGAGATGATGGTGGAGGCATGTGCACGGATCCGGGAGTTTTGCCAGCGCCACTACAGACCCTGCAGCCAAGACAGCAACGAGCTGGACCAATGAGAGACAGcctgagagagaaggagggagaccaGAGAGTATGGATGTAGTAAGGGACAAAAGTGAATGTGAAAAAAAGAGAACGGGAAGAGAGCGGGTGAAAGAAAGAAGAGGAACTAGGGAAGAGGAGTGAGAAAATTATGTTGCACTGCAGGAGCAAAGGATTTAGTAAGAAAGAAGAGGAACTCGGGAAGAGGAGTGAGAAAATTATGTTGCACTGCAGGAGCAAAGGATTTAGTAATGTAATTGGTGGTCGTCCATCTTTGGTAACTTCAATTTATGAGCAGACCTGATATTTATATTTTGTACGGCCATTTTATGTTAAACTTACTTTGACTAATTATTTGGCTTCATGGTTGTACCAATTCTCAAGGCTCCAATGTTACTTTATATGTTGGGTCGACCAAAACCCCATTGGGCCTATAGAACCAGGGACCGGGGTTTTACCCACCCCTTTGTTCAAACCATGATGGGGTTAATGGTTGGGTTGATCCTACCAGGAAAACAAATGGAACTCAAGCACCAGCAGATTACATACAGTGCTTTCCATAGTCTGTgttacatactttttcttgctaGGATTATGATGCTCAACCAAAACCTTTGCTATCTACTTGTTAATCTATCTTCATGTAATAttgaatgttattttttttatgtgaAAAAGTTATTTAAACCAAAGTAAAGCTATGAAATACCTGTTTGTTTGTTGTGACTCATTAGCTCATGGTAATATAAAAACTAAATCAAAGGATGTATCCACTAATTTATTGATTATAGTTTGTTATTGAGGCCTACACCCAATCCAGACATGGGGATTTGACCTGAGCTGACCTGTCCATCAGTAAAGTCATGTAACAGCTTAAGGGTTGAATCAGTCCAGAATGGGGATGGACATGGTTAGGGTTT

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K00815 TAT; tyrosine aminotransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036953800.1 False 2307 mRNA 0.46 12 66656844 66665448
XM_036953806.1 True 2391 mRNA 0.46 12 66656928 66665610

Neighbor

gene id symbol gene type direction distance location
vps9d1 LOC106560896 coding upstream 45254 66586399 ~ 66611590 (+)
LOC110494295 fanca coding upstream 75193 66555547 ~ 66581651 (+)
LOC110494286 LOC106560898 coding upstream 104487 66549545 ~ 66552357 (+)
LOC110494278 chmp1a coding upstream 109516 66537955 ~ 66547328 (+)
LOC110494260 LOC106560901 coding upstream 127283 66508242 ~ 66529561 (+)
LOC110494385 cotl1 coding downstream 12144 66677754 ~ 66688505 (+)
meak7 tldc1 coding downstream 39692 66705302 ~ 66711432 (+)
LOC110501804 plcg2 coding downstream 51576 66717186 ~ 66731976 (+)
foxl1 LOC106560889 coding downstream 159637 66825247 ~ 66828635 (+)
LOC110494451 zfpm1 coding downstream 234407 66900017 ~ 66995521 (+)
G173893 NA non-coding upstream 6628 66649802 ~ 66650216 (+)
G173890 NA non-coding upstream 10831 66645803 ~ 66646013 (+)
G173889 NA non-coding upstream 11219 66645419 ~ 66645625 (+)
G173888 NA non-coding upstream 12310 66644299 ~ 66644534 (+)
G173870 NA non-coding upstream 34264 66622344 ~ 66622580 (+)
G173885 NA non-coding downstream 12404 66678014 ~ 66678467 (+)
G173902 NA non-coding downstream 25396 66691006 ~ 66691283 (+)
G173923 NA non-coding downstream 67641 66733251 ~ 66735127 (+)
G173915 LOC106560887 non-coding downstream 107862 66773472 ~ 66774254 (+)
G173989 NA non-coding downstream 186597 66852207 ~ 66858924 (+)
LOC110494096 LOC106561115 other upstream 390821 66262594 ~ 66266024 (+)
G172639 NA other upstream 720711 65935596 ~ 65936133 (+)
jph3 jph3 other upstream 1015868 65593468 ~ 65648660 (+)
map1lc3b map1lc3b other upstream 1120057 65531126 ~ 65536787 (+)
G170150 LOC106560975 other upstream 2778611 63873248 ~ 63878233 (+)
G173938 LOC106573687 other downstream 76210 66741820 ~ 66742213 (+)
LOC110494472 utp4 other downstream 573280 67232278 ~ 67239902 (+)
hsbp1b LOC106561110 other downstream 820553 67486128 ~ 67488205 (+)
G176612 LOC100846954 other downstream 2195228 68860838 ~ 68861368 (+)

Expression


Co-expression Network