LOC110494415 (LOC106560887)


Basic Information

Item Value
gene id LOC110494415
gene name LOC106560887
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 66735181 ~ 66774321 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036953831.1
TTTGGTATCACATGAACGAGAAAGGACCAATCCAAGTGGCTCTATCGAAGTTATTTTGCGAAGATAGAGGAAGACCGAAAAGGGAACCTTACCAATGAACATTTAAAGACAAAAAACCGTCGCCTTTTGGATTTGGGTCTTTTGTATCAGAGCTACGTGATTAGTATAAATTAAATCTATGGATTATGTTAGCTGAACTGGGGCTGGCAATGGCCCAAACATATTGAATAGATCGTTGGGGGAGCGAAACGCGACGTTGTAGTGGGCTTTGTACGGATAAAGGATTATTTGCCTACACAATAACTGCTCCGTCGTGAAATACCCCCACCAAAGATTCGTTCATGGCTTTTCTGTCAGTGTCTCCGCCGTGTCTGTTTTCCGCTCGCAACACCATTTTAACTATTGAGGTCGCATCGCTGTAGTTTTGCTCCCAAGCCCTACAATCTACACACCGCCGGCTttcctttttatatatatatattttttttttaactactaAAAGTACATAGTTACATAGTAGGATAATTTTTGCGACCAAATAAATATGGATTTTAACAGCAGCGGTGGGGGAAACGAGCTACATAATAACCAATTCTATCAATCTGAGGAGAGCAAGCCTTTGCTTGGAGAGATGTCTGTGCCGTTGGAggggaataataataaattatGCGCCGGGCCGTGCAAGAGAACCCTGCAACATTGCAGCAGCGGGATGCGATATAAACTACTACAGGAGGGAGACATCCAGGTGTGTGTGGTCAAACACCCTCGGACCTTCCTCAGCAAAATTCTAACCTCAAAATTCTTACGGAGATGGGAACCGCACCACCTCACCTTGACAGACAGCAGCCTGGCGTCTGCGACGCCCACGGGGTACATGGAGGCTGCCCTGTCCTACAGCACCATAGAGGACCTGCAGCTGCTCTCCTGGGATAACGCCCCCAAATACTGTGTGCAGCTCAGCTTCCCCGGGGGCACCGTCCTCCTGCAGGCAGCCAACAGCTATCTGCGGGACCAGTGGTTTAATTCTCTACAGTGGAAGAAAAAGATCTATAAGTACCGTAAGGTTCTGAACAACCCAAGTCGCTGGGAGGTGGTTCTGAAGGAGATCAGATTGCTGGTGGACATGGCCCTGACCTCTCCCCTGCAGGATGAGTCCATCCACCAGGCCCCCCTGCAAATCATCTCCACCCTGCTGGCTGAGAACACCAACCTCAGCACTCAGGACCATGAGAACATCATTGTGGCCATCGCTCCTCTCCTGGAAAATAACCACCCTCCACCGGACCTGTGTGAGTTCTTCTGCAAGCACTGTCGGGAGCGTCCGCGGTCCATGGTTGTGATTGAAGTGTTCACCCCTGTGGTCCAGAGAATCCTCAAACACAACATGGACTTTGGGAAGTGCCCCAGACTGCGTCTCTTCACTCAGGAGTACATCTTGGCTCTAAATGAGCTCAACGCTGGGATGGAGGTCGTCAAGAAATTCATTCACAGCATGCATGGCCCCACCGGGCAGTGCCCTCACCCCCGTGTCCTGCCCAACCTGGTGGCAGTGTGCTTGGCTGCCATCTACTCCTGCTACGAGGACTTCATCAACAGccGGGACAACTCCCCCAGTCTGAAGGAGATAAGGAACGGCTGCCAGCAACAGAATGAGCGTAAACCCCCTCTGCCCCTCCGCCTACTCCGCCCAGAGCCCCTGACACCCGCACCCACAGgtctgctgtccctctcccctcccccctcagctcccctcccccctccccccacactgcccctctctcctccgcCTTCCATCGTCAACTCCAGTGAGATCCTGGTGGAGTTGGAACGCAACAACAACACTGCCAACGCCAGGCGGAAGGGCCCAGGGGGAGGCGACAGTGAGCCCAACCTGATCGACTGTCTGCTGGTCAGCCCCGCCCTCAACGCCCTGTCAATCCAGCTGCCTGCCCAGGCCGACCGCGTGCTTGGCTGCTTCGCACTCATCCTCAAAATGCTGTCTGACTACGATGACTGGAGACCCGCCCTGGCTAGCCTGCTGCAGCCCATCCCATTCCCCAAAGAGGCCCTTGCACATGCCAAATTTACAAAAGAGCTGAAACATGTTATTCAGAGGTTTGCAGAGGACCCCAGACAggagGTCCACTCCTGTCTGCTCAGTGTGCGCTCAGGAAAGGACGGTTGGTTCCAGCTCTACAGTCCAGGGGGTGTGGCTTGTGATGATGATGGGGAGCTCTTTGCCAGCATGGTTCACATTCTTATGGGCTCCTGTTACAAAACTAAGAAGTTTCTCCTGTCCCTGGCTGAAAACAAGCTGGGGCCCTGCATGCTCCTGGCTCTGCGTGGGAACCAGACCatggttgagatCCTGTGCCTGATGCTGGAGTACAACATCATTGAGAACAAGGACACCCAGCTGCAGATCATCTCCACCCTGGAGAGCACTCCGGTGGGCCTTCACATGTACGAGCAGCTGTGTGACAGGCAGAGGGAGCTCAAAGAGCTGCAAAGAAAAGGAGGCCCCACCCGACTCACTCTGCCCTCCAAGTCTACAGATGCAGACCTTGCCAGGCTGCTGAGCTCTGGCTCCTTTGGGAACCTGGAGAACCTGAGTCTTGCCTTCACCAACGTCACCAGTGCCTGTGCGGAACAGCTCATCAAATTGCCCTCTCTCAAACAGCTCAACCTTTGGTCCACCcagTTTGGAGATACAGGATTGCGGTTGCTGTCTGAACACTTGGCGTGTCTGCAGGTGTTGAATCTGTGTGAGACACCCGTGACCGACGCCGGCCTGCTGTCCCTCAGCTCCATGAAGAGCCTGTGCAGTTTGAACATGAACAGCACAAAGCTCACAGCAGACACATACGAGGACTTAAAGgCCAAACTCCCCAATCTGACGGAGGTGGATGTCCGCTACACCGAGGCCTGGTGAACACATCCTGTGTGACATCACTAGAACACCAACTCCCACACCATCCAAACATGAGGATTACCTGATATCAACAGAACACATAGTCTCTCTTACATCAACAACAAGAGGATCCTCTCCCATCTGCAGACGaggacctttttttttttttaatctggaGATGACATCAGAACGCCTGGACCTCTCTAGTAACATCATGTCAAGCGAGAATTACTATCTTTCTAGTGACATCGTCAAAATACAAGGAGCTCCTTTTTAGCGACATCATCAAAAAAGCAAGGACCCACTTTCTTGTGACACAAGGGAccttatctttctctctcatgcGTGGTTTCTCACTCTGTTCCTGTCCACATCATCCTATTTGCCCTCAATAGACTCCTCATAGATTTATTCAGTGTTGTGTCAAATGTACACAGAACACCAAGTAAACAAGTGGAtatttctcccctccctctctcccactctctctgaggACCTTTATGTTTAAATGCACTCTTCCCTCCATTTACTGGGAGCTCTTCTATCCTTGTCTGATCAAGGTTAGATAACCAGGTCACATTCCAGTACACTTTTGATATTGCCTCTAGTTCAATCCAAATGTAGCTCTAAAGATGTGTCCAATTGTCATTTCggtcttgtttttttttgtttgggtTCTTTCAGGTTCAGATTCTGGCCTTTCCAGTCCTTTATTGGGGATGAGGTGCTACctcaaacaaaataaaaattgCAAGACTGTGCCTAATTCCTCATATGACACTCAATCAATTTTTATCAACTTGAATGAACATATTTTTCCAGACATCTCTGCATTCATATATTGTGTGTGACATTTAAGCAGACATTTCAGGAGCTCTGCTCTGTGGTTGCAACACTATTAAAAGGAAGAAATGTTTCCTTTTAATTTGTGTTTTCAATGTACATAACTCCCATATTTAATAGAATGATTGTGTAGTAGGTGGTCTGGGACTGCCTTGTATTTATGATTTCTCAACTTCATATCCCTCTTTCTGCCTCCCATTATTTTCTCATATGTTAAGACACTTTCCAGGCATACCGCAGTTGACTTTCATCACACAATCAATCGAGATGTTGCCTAACATTCTTATCCATGCGGAGGCCTAAACTGAAGCCCTATGTGCACCTTGCATCAACCTCTCAatgttgacttttttttttttctaaagaTAAATATGGGATACATTTTGATATTAGCTGTAGATATACAGGCCATGGTCATCCTTAGGAGTATTTTGTGATAAATGTCAGGAGTGAACAGACTCTGTAGAGGCAACAGCATggtgtatagatgaccctgtttAAAAAAGCAGCACATAACCTGCCCAGAGTCTCTAGAATAAGACCTTTGTGGTTGGTCGGTCAGTACCAGAGTGGAAAGCCAAACAAGTTCATTTCTGTttcaatccattttttttttgttgccatacTGCACTTCAGACACAAATATATTGTATCATACATCAGTACTATCTGATACAGTGGCATAGAATCACGTGCTAATCATTTGTTCACAGAGCCACATTTCTCTCTactctgactaggtatccctctttccctttgcCCATCAAGCATGGAGAGAGGGCACTGTTTTGGAGTATGCTCACCCATTTATGTAGTACATGTAGCTGGGGTAAAATGTTTCATTCCTCCATCTTCATTTGGAATCATGAGAACACTGTTTGCATGGGCAATACCACCAGTTCTGAATAGATTTCCTATATTATTACCAAGGAATGTGATATTACAGCATTCAGGTATGTGGTAACTTGGCCCACACAAACTGCAGAAGagttgtccctctgtctcttctgcTTTAGGTGGTTTTGATGAATCTGTTCCTTCTCTGTGCCCTTTCAGGGCGTCTCGTACACAATCGGAGCGTTATTCTGTATGCCCGACTCTGGTTCCTTCCACTTTTGTTTTCTCCAGAATGCTCAAGAATTCTTTCCGTTCAGTTTTGGCAGAACTTTCAGGACACAGTTGGACACCGTCCAATAAGATTTCAATGCTATGTTGATTTTGAGTGCCACGACGGTTCGGTGCACTAAATGTTGTTGTATATGGCCACCAGGCTTAGGACCTCATGCTGTCACATCCTGTATAATGTAAATACAAGTGTATATAATTTTCTGTCCCTCTCTATGTTCCCCTCCGCTCTGTGTTTCTCTTAGTCTCCCTGTTAGGGAGGCTGTTGCCTTCATCTTCAGGATGTGTGCGTGTGGTCATTACTTTAATTTTCACACAAAGTGCACTGTAATCTAACTTCCATTATGTTTTCATGGTAATTGTTATGGCTGATTTTGTATTTGTTTCAACAGTTTGTTTGATTTGATCACTTTAATCAAGTGTTTGTCATCtgttttgtatatacagtaccagtcaaaaatgtggacacttactttctttttactattttctacattttagaataatagtgaagacatcaaacctatgaaataacacacatggaatcatatagtaa

Function

NR:

description
C-Maf-inducing protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036953831.1 True 5438 mRNA 0.47 21 66735181 66774321

Neighbor

gene id symbol gene type direction distance location
LOC110494363 klhl36 coding downstream 56412 66667874 ~ 66678769 (-)
LOC110494342 LOC106560894 coding downstream 91592 66641062 ~ 66643589 (-)
LOC110533844 NA coding downstream 96979 66637153 ~ 66638202 (-)
LOC110494333 LOC106560895 coding downstream 101363 66629559 ~ 66633818 (-)
LOC110494316 NA coding downstream 148598 66582120 ~ 66586583 (-)
LOC110494421 LOC106560888 coding upstream 913 66775234 ~ 66790323 (-)
ces3 LOC100380756 coding upstream 79985 66854306 ~ 66859005 (-)
LOC110494458 LOC106573692 coding upstream 313906 67088227 ~ 67113877 (-)
chtf8 chtf8 coding upstream 455799 67230120 ~ 67232289 (-)
LOC110494484 wfdc1 coding upstream 465724 67240045 ~ 67251423 (-)
G174470 NA non-coding downstream 54 66733237 ~ 66735127 (-)
G174508 NA non-coding downstream 39502 66695293 ~ 66695679 (-)
G174475 NA non-coding downstream 80790 66652531 ~ 66654391 (-)
G174447 NA non-coding downstream 113177 66621575 ~ 66622004 (-)
G174437 NA non-coding downstream 181269 66553555 ~ 66553912 (-)
G174580 NA non-coding upstream 77180 66851501 ~ 66851815 (-)
G174584 NA non-coding upstream 89380 66863701 ~ 66863937 (-)
G174586 NA non-coding upstream 94435 66868756 ~ 66869181 (-)
G174630 NA non-coding upstream 145432 66919753 ~ 66919999 (-)
G174632 NA non-coding upstream 147664 66921985 ~ 66922274 (-)
G174505 NA other downstream 42331 66692408 ~ 66692850 (-)
G173696 LOC106560906 other downstream 344415 66375226 ~ 66390766 (-)
G173675 NA other downstream 396795 66335412 ~ 66338386 (-)
LOC110494122 LOC106560915 other downstream 436867 66277821 ~ 66299637 (-)
G173431 NA other downstream 812952 65921850 ~ 65922229 (-)
G177487 NA other upstream 2816814 69591135 ~ 69591722 (-)
LOC110494902 LOC106560839 other upstream 2919288 69648833 ~ 69767366 (-)
LOC110501848 NA other upstream 3786201 70552263 ~ 70642587 (-)
fam169b fam169b other upstream 3994837 70769140 ~ 70773282 (-)
G179215 NA other upstream 4131051 70905372 ~ 70906254 (-)

Expression


Co-expression Network