foxl1 (LOC106560889)


Basic Information

Item Value
gene id foxl1
gene name LOC106560889
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 66825247 ~ 66828635 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021569469.2
AGTGTTTATGATCGAACATTTATTTTCCAGTGCAAAGTCAACATAAAACAGCAAACGTACAACAATTATTTAACATTTCTAGACTCATGAGGCAGGGACGCAGCGTGAGCCCGTCATTTCAAGAGCAGCACTCTCTACGGGCTAAAGTTTCCTTGGGAAGGAAATAGCGCTTCAGCGTCATGAGCCTGTACCACAGCAGAGTGCCGCAGCTTGGAGTGCCACCCTCCGCGCTCAATCTCTCCAATTCCTCCTTGATTTACTTATATGGAGGCGACGGCGGTACCATTCTTCCCGCTTTGGGTTTCGTCCCGAATCGGCAGGAACCTCCGCAAAAACCTCCGTACAGCTACATTGCACTTATCGCAATGGCTATAAAGGGCGCGCCAGAGAAGCGCGCGACGCTGAGCGGCATTTACCAGTTTATCATGGACCACTTCCCTTTTTACCATGACAACAAGCAGGGCTGGCAGAACTCAATCCGTCACAACCTCTCTCTGAATGACTGTTTCATCAAGGTACCGAGAGAGAAGGGCCGGCCCGGTAAAGGCAGCTACTGGACTTTGGACACCAAGTGTCTGGACATGTTCGACCACGGAAACTATAGACGGAGGAAGAGAAAACTAAAGGGTCAAGAGACTGCAGAGTCCAAAACTACTCACAAGAGGAACAGGGGTCCGGTCTCCTCGAACCCGACAGGGTCTAAACTTCCAGCTGATGCTTACCTGAGGAGGATGGGTAGGCCAATGTCAGCTGGAGAGAGGGCTGTGGTGGGCACAGAGATGGAACAACAGCATAGATGTTATGAGAAATGTTCAGATTTAAAATATGTTCTTGGTGAGTTCAACAATGTTGGGATGCAGCAAAGTGGGTCTGGCCATGGCCCAAAATTAAATGTGCACAATGAAATCCAAATTGAATCCACGCAGGACATGTACGGCAGTCAATCCACTGACGCGCGCCTCGGTCCAAGGTGCATACCAGTTCAGGACCACAGGGTCTGGTTGGACGCAGCGCATCTTTCAGGAGCGTCTTCCCTCCACGAGGTTGAACCAGACAGCAGCATACTAGCGTTTGATGGGAGGGAGAACGGGTCTCCTGTCCTGTCCGGTTGCGCGGTGAACTTGAACTCATCTATTCTGTGCAGAACAAAGGACATTATACCCACCGTCCCAAGCAGAGCAACGGACAAATCAAAATGTTTTAGCATAGACAGTATCTTATCAAAAAAGGGAAACCAAATGCACAAAAGCAGCATTGGTGTGACAGCACAGACGGGCTTGGCCCCCCAAAGTCACACATTCAATTCGTCTGTTATCTTGGGTGCACGCACGCACCAGCTGTACCAGATGGAATTTCCTCTTTGCTCTTACTTATCATTCACCTGCCCTGAGAAAGTTCTACATTTCAAGTAGGCAAAGTGATATACAAACGAGAGGTGATGTGATAAAATGGGAACATCTAAAGATATTACGCACGAGTGTCACCATTTTCGTGCAGTGGGAAGAGAGAATATGATATTAATAATTTGACTTCTACAACCATCTGAACAAGAGCCTATCAGCACTATAACGATGAACCAATTATGATTACATTTATGAttatgattatgattattagGCTACCTTCACTTCCCATGAGCTGGTGCGCGTAAAATACCTCTGCATTTGACGAAAAGCCCTCATGAGTATACGGATGTTGTTTtagtaaatgtaaatgtttattaTAATGAGGGTTTTATATGTAGTAGCTCTGAGCTTGTCATCGGAGTGCCTGCCATTTCACTGTTGTGTGAGTTATATTCTGTGCTGATCCTCCAGTGTTACATTTCAATGTTAAAGTGGTAGCATTATGGTATCTGAAAATATATATCATTTTACAAAGTTTTCTTTTTCCATCTtgaatgtaaaaacaaaaccgtAATAAACTAAAAGAATACATTGCACATCAGCTTGATTTAATTCTATGAAAATTGACAAAAGTAAATTGAGGACATTGCAGTGCAACACATTCAATCTTAGCCTATAAAACGTAAAACTCATTACATTTGGTCATGCATTCTTTAGTATAGCCCTGCAGACAGTCTTCAATGCTCTCCCTCATACAGACTTACACCTTGGAAtaatttgagtttattttatttttacagggacagtacacattaatcaacgtttcagtaaatgTTCCGGCtcattttcaaccgcagtccctgggcatgTTAGAAGAGTTAAACTTGTTCATGACCCACAGTAAGTAGGCCTATTGCATCAGAATTAGAGCTATGGGCACCAGTAAACATACATTTGTTTACCAGTTGATCAAATTTCCCATTGCAAAAAGTGCTGTTAACACAAATACTGTATCAACCAGAGCATTGCCATCTGTTTCCTTGAGGTCACTATGTGATTTACAGTGAATGAAAGTTGTTATGGTATTGAACTGTAAAGTTGCATACTGTATACAGTCGCATAAATAAGCAGTGGGTTTGTGGGGTTTTGTTATGACACCTGCATGAAATCAGAGCGTTATTGACAACATAATCATGAAAACTCTTAGCCCAAACTCCCACTTCTAAATATAGCTTAAATTTATACTCCTCTGAAACCCTCACTGCAGACCTTGAGAGTGCAAATCAGGAATGCCTGTGGAAATAAATAAACTTCCCCACATTTGAGGAGAGGAACTCACAATCACAAGCATTTCCTGTGTATAGGATTCTTTTGGTCAGATGTGTAAATAAAACGTCATGCTGAAAACCTTTTGAGGAGAAAAAGAGGTTACATTCCCTAGCCTGCTCAGCTCAAACAGTCATCAGCACATTTAGTCTTCAACTCTATTGACAGATTCTGTAGCACTTTCTGTAAGATACTGTGGCTCTGCTAAACTGAGGATCCTCAACAAACAAGAACTAAGCATCTGAAACAATATCTTTTGTTTATAAGAATTTCTTCAAATTAATCTGATGCACCAAAGTGGTTGTTTTTTCCCAAATTTCATGCATTTAATTAAAATATGAAGAATATCCATCTCAATGTTATTCTGATTGAATTATTGTGAcaaattcagatttttttctctctctaattGTCTTGACCAATCAgaccagctctgaaaaagatctgatgtgaaaacatctgatgtgattggtccagAAGACCAAtcagtagaaaaaaagaacagaattggactgcctgtcTAAATGCAACCTAAGTAAATGACTGAAAACTAAGTTCAGTTCACATTTAAACACACTTCTACTGGTCTGCGATACCACTCCCTAACATAATGACTATTGAGACTTATGATGTCAGCATATATTATAAGTAATTTCTAGTCTCTAGAGCAAACTCTTCAACCAACAACTAACTGTAAAGTTAGTTAATAATTGGAGA

Function

NR:

description
forkhead box protein I2-B-like

GO: NA

KEGG:

id description
K09405 FOXL; forkhead box protein L

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021569469.2 True 3389 mRNA 0.41 1 66825247 66828635

Neighbor

gene id symbol gene type direction distance location
LOC110501804 plcg2 coding upstream 93271 66717186 ~ 66731976 (+)
meak7 tldc1 coding upstream 113815 66705302 ~ 66711432 (+)
LOC110494385 cotl1 coding upstream 136742 66677754 ~ 66688505 (+)
LOC110494358 LOC106560893 coding upstream 159637 66656844 ~ 66665610 (+)
vps9d1 LOC106560896 coding upstream 213657 66586399 ~ 66611590 (+)
LOC110494451 zfpm1 coding downstream 71382 66900017 ~ 66995521 (+)
LOC110494462 zc3h18 coding downstream 307307 67135942 ~ 67176522 (+)
il17c2 il17c2 coding downstream 349026 67177661 ~ 67180759 (+)
tango6 tango6 coding downstream 352465 67181100 ~ 67214348 (+)
has3 has3 coding downstream 388157 67216792 ~ 67230218 (+)
G173915 LOC106560887 non-coding upstream 50993 66773472 ~ 66774254 (+)
G173923 NA non-coding upstream 90120 66733251 ~ 66735127 (+)
G173902 NA non-coding upstream 133964 66691006 ~ 66691283 (+)
G173885 NA non-coding upstream 146780 66678014 ~ 66678467 (+)
G173893 NA non-coding upstream 175031 66649802 ~ 66650216 (+)
G173989 NA non-coding downstream 23572 66852207 ~ 66858924 (+)
G174009 NA non-coding downstream 40819 66869454 ~ 66869656 (+)
G174049 NA non-coding downstream 90144 66918779 ~ 66919002 (+)
G174051 NA non-coding downstream 91116 66919751 ~ 66919983 (+)
G174083 NA non-coding downstream 144360 66972995 ~ 66979049 (+)
G173938 LOC106573687 other upstream 83034 66741820 ~ 66742213 (+)
LOC110494096 LOC106561115 other upstream 559224 66262594 ~ 66266024 (+)
G172639 NA other upstream 889114 65935596 ~ 65936133 (+)
jph3 jph3 other upstream 1184271 65593468 ~ 65648660 (+)
map1lc3b map1lc3b other upstream 1288460 65531126 ~ 65536787 (+)
LOC110494472 utp4 other downstream 410255 67232278 ~ 67239902 (+)
hsbp1b LOC106561110 other downstream 657528 67486128 ~ 67488205 (+)
G176612 LOC100846954 other downstream 2032203 68860838 ~ 68861368 (+)
G176725 lonp2 other downstream 2127628 68956263 ~ 68957886 (+)

Expression


Co-expression Network