LOC110494451 (zfpm1)


Basic Information

Item Value
gene id LOC110494451
gene name zfpm1
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 66900017 ~ 66995521 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021569506.2
TATCAGCTGTACTGTTTAGTGTCATGCTCGCGCTCCATTGATACTGGCTGCCTGTACTAGAGCGTGGAGCGGACTAGGGAAAAACATAAAGGAAAAACGAAAACAATCAAGCGGCAACATTTAATACAATAATGATAGCGACACAACTGCAGGCACTGGCATCCCTTCGGTGACAGTCAAGACATcacaaggaagaggaggaagagctaGGAGAAGACCGCACATCTGGGAAGACATTTAAAAGTAACTAAAGCTTACTTGACCACAGGTAGTTATCGCGCGTCAAATAATATCAAAGTGCAGGTCATGCGGATATCTCCGGGTGGAGATCGAGCTGTGTTTCATTGCTAGTAGAGGTCTTCTTGGGAAGAAGATCACTTCTTTTCAGCTGAACAAGAACAGGATAAAGCCATGTCCCGAAGGAAGCAGAGCAAACCCCGGCAGATCAAACGTTCTATTGGCGACCTGGAGGGTGGTGAGGACAACACACCTGACGATGTCAGCCTATCGGGCGATGAGGGCGGAGCCTCAGACTCAGCAGAATGTGACAGCTCCAGTCCACCACCATATACCCCCCTGTACAATGAAGAGCCAAGGACACATGAATCCCTTTGTGcacctgatgatgatgatgaggaggaggagaaaggtccAACACACACTaaggaggagatggaagaggaggaagactgtCTACATTGGAGGGGTCCAGATGATCTGGAGCTGAGTGATGATGCTGCTTACCCCAAGGTCCTGGCCTGCAGGGACCTCACCACCGACACACTATGGGGGCCATATGCTGGGATCGTCCAAACAGAAGATGTGGGAGATGACCAGGAGTCAGAGATCTCCAGGTTGAGCCTGGTGTGTGAGGACACAGACTGCTGGCTCCGTAGAGTCCTGTTAACCTCTGATGCAACAGATACCAACTGTACCATCTACAGCCAAGGTGAGGAGCTGTATTGTAAGGTAACCCAGGACATCTCCACAGGGGACGGTCTGCTGGCTACGCTGTCTACACCCTCTATGGAGCAGCGGTCCCCCTCTAAGACCCAGGCTGTAGCGGTGAAGGAGGAGCCTACAGGTGTCTACCCAGCATCCCTCCACTCTGAGATACAGCTCCTCCCCCAGCAGGCTGGGATGGCAGCCATCTTGGCCACGGCAGTTGTCAACAAGGACATCTTTCCGTGTAAGGACTGTGGGATCTGGTACCGCAGTGAGAGGAACCTCCAGGCCCACCTCATGTACTACTGTGCCAGCCGGCAGAAGCAGCAGTCCTCCTGCTCCCCTCCACAGGACAAGCCCAAGGACTCCTACCCCAATGAGCGTGTCTGCCCCTTCCCACAATGTAACAAGAGCTGCCCCAGCGCCAGCTCCCTGGAGATCCACATGCGGACACACAGTGGTGAGCGTCCCTTTGTGTGTCTGATCTGCCTGTCGGCCTTCACCACTAAAGCCAACTGTGAGCGTCACCTGAAGGTGCACACGGACACGCAAAACGGAGTGTGTCACGGCTGTGGCTTCATCTCCACCACGAGGGACATCCTCTATAGCCACCTGGTTACCAGTCACATGGTTTGTCAGCCCGGCTCGCACAGTGAAGTGTATTCCCCAGGTCCTGGCCTGCCCAAACTGCCTCTGTCCACAGGTCTAAGTCCAGGAGACTCTGGTGTTGTGTTGAAATGTCAGATATGTGGCCACGTCACAGACTCACCCGGCCAGCTCCAGCAGCATGTTCGCACACACCTGGAGGTGAGGGTCCCGGCAGAGAGGAGCCCCTCACCCCGCCAGAGCACCCCCTCCTCAGCTGACCACCCTGAGCCCCCTGCCTGCGTACCCCACCCTGACTCCTCCAGCCCTGGGGCCAATGGGAGCTCAGCCACCCCGCGAGGCTGCAGCCCACCTGACCACCTCCCCACAGACATGAGGATCAAAGAGGAACTGCGCTCGGACTCTGAGAATgaggggcaggaggaggaggaccggGAGGGGAAGAGCCATGGACACACTGGGGTAGGGTGCTCTCAGACCTCCACCTCCCCCAGGAGTCCCTTTGCTGTGGCCGTGAAGGCAGAGCCAACCAGCCCCACCCCTGGCTCCAGCCCTGCCCACCCGGGAGGAGCTGGCTCAGTGCTGCCTGGAGGAGCTGTATTCCTGCCACAGTACATGTTCAGCCCAGAGGCAGCCATCCTGCCCCAGGCCTCAGAGATCCTGGCCAAGATGTCTGAGATGGTCCACAGCCGGCTGAAGCAGGGCCAGGTGTCCCCTGGGGCAGCACCAGCCTTCTATCCCGCAGGCACTACCGCCACTGTCCACAAGGGGGCCACCTGCTTAGAGTGTGACATCACCTTCAACAACATAAACAACTTTTACGTTCACAAGAAGCTCTACTGCTCCAGCAGGCATCAGCAGGGAGACGCGGCTGGCCCAGTGAAGGAGGGGGCCTCGGGGGTCACCGTCCCCTCTGTCGGACACGGTTCATCCCCTCAGGCTGCCACAGCCTCCCACAGTGACTCAGACCCTGTTCCAGGCAGCACCGGCACAGAGGGCAAGCTGGTGGAGATGAAAAGTGAGAACCCTGGGGTGAAGGAGGctgtgtcctcctcttcctctgagggggaaggtggtggaggaggacgaGACCTGGCCAGTGAGGGCAGCCAGAGCCCCAGCGGCTCAGCAGAGGACCAGGAAGAAGACCCCACCAGGACCTTCTGTCAGGCCTGCAACATTCACTTCAGTCGCCATGAGAACTACACGGTCCACAAGCGCTTCTATTGTGCCTCACGCCACGATCCGTCCAACCAGCGGTCAAGCGCTGGCAAAGCCACCTTCCTGCCTCAGCCCATCCGCACGCGCAAGAGGAAGAAGATGTATGAGATCCACATGGCTCGGACTGAGGCCCTAGCCAACGCTGCTGCTATTGCCTTTCCCTCTGCTCCAGGGATGGGCCCGGCTGTGAAGCAGGAGGCTGCTGCCTCATTGGGGAAGGTCCTGGAGGCCCCTGTTCCAACCATGGCCTTGGGCCTGTGTCCAGCCACTTCCAGTAGCACCAGCCCTGATGGAGACGGCCCAATCGACCTGAGTAAGAGGCCCCGTCTGAGGGACACCCCacggggcagcagcagcagcatctctGCTCTGCCCCTCACTGACTACCACAAGTGCACCGCCTGCAGCATCAGCTTCAACAGCATTGAAAACTACCTGGCCCACAAGACCTACTACTGCCCAGCCACCACCCTGCAGGCCCACACCCTGAAGACGCTCCACAGGCTGAAGAGACCAGCCTCCACTTCCCCAGAGGCCAATGGGCTCCCCACAGAGAAGGCTCCTCAGGGGGCCTCGCCCAGCCCTCACCCCTCAGCTTTGCCTGGCTCTGAGTCTACATCCCTTCACAGCGGCCCTGCAGGCAAAGGCCCAGGCTCTCCTCCTGTGGTCTGCCCCTACTGCCCTCCCAATAGGGCGGTGACCTGTGACCTGGTGGAGCACTTCAGATCCATGCATGGCCTGGTCTTGAACCTGGAGGGCCAGCCAGCTGTCATCAGCCCCAGCCTGAGCCCCAGGGATGAGACTCCAGTTACCCCGCCCAAACTGGGCCTCCAGACCCGCAGGGACAGCATCAACATTCGGGTCAGAATGGACACtgtatccccctcctctcccctggtgAACATTAGCCCCCTGGGTCCCCATGCTGGGGGTGGCAGCTCCCCCAAAGCAGCCCCTCCTGCTGTGTCTCCCACCAGGTCCCTCCCCCTGACTGTGTCCCCTGTGCCTGAGGTCCTGAGGGAGGTTGGGGTTATGAACCACCAGGCTGCTGTTGCTCTGCTTCCAGACAGGGCAGCCCTCACCCTGGGTCTCCCACTCCCTGTTGCTGTCCCAGCACCTACCACACCCAAGACCCTCCTGGTCTCCCCTTTGCAGAACGGTAACATCCGCTTCTGCCGGCTGTGCAATATCAAGTTCAGCAGCCTGTCCACGTTCATAGCCCACAAAAAGTACTACTGTTCCTCCCACAGCGCTGAGCACGTCAAGTGAACATGCCTGTCTATGCAGTGTCCCCTCACATCCTAGCCCCAGCTTTTCACCTGTGTCAGTGCCACCATGGCATAGCACCACGTCTGGACAGTCTGAAGTAAATGTGACTGTTACTCGCCAGGCACTGGTTAGCTGCTCGGACGCTGACGCTCCCGGTATTGTTACTATGGTAACTTATTTCTTCTTATGGGTCAAAGTTCGTATTACACTAAGAGCGGAGATACGCTACCTGCACACACATTTGTGCCCACCTTCCCTTCCCCACCACCTCAATACCTGTCCCCtaaccctctccccccctctcaccTCCAAGGTTCACAGAATGTTGATAATGGGACTTCTAGATCCAACATTTAATCTCCTGAGCAAGCTTAATTTAACTGTTTATATTACAGTTATCTTGATTTGATTGTGATTGTTTGAAGCATTTCTTGCTCATGACGAAACTTGCTTTTCCTGAGCCATTGATGCTCATGACCTGTCAGTGAGTGGGGACAACTGTTGTCCCCCAGGGCCCTCTTGTGGAGCTGACCATCTCCACCTTTTTATTTCTACCTACCTGTGCATAGTGTATGATGCTTTAAAATAATGATATGGTTTTGTTTGAACACTGGCTCTTTTGTTAACTAGAAAGCATTTTAGCTGAATTACAGGAATGGGTGTCACAAGGTTATCAATTACAGATGAAATATTTGCAAATGGATAGATTTTCCTTTTTCCAAAACCACAATTGTAATTTCTCTTAATGCAAGGGAAAGCATGGGAAATATTTATCTCTGATTTCATGTCAACAGAAAACTACCTAGCGTCTGaaaatatttttagtttttatttgtattgttttCATACTTTTCGAAGGAACTCTTTCAATCTTGGTGTGTAAAGGTGTTTTTGTAAGTGTAGATATATAATATCTTTCACAGTAATCACTGGGATGACACTGAATCTTATTTTCATTATTgtcagcattttttttttaatgctggTGTTTTAAATTTGGGTAGAACGAAGATGACTGGACCTGAGTATCAGGATGAAGACACTTCACTTCCTGTTCCTATAATGCCCTTCACAACACCGCCCATCTCCCCATTAAACCTGACCTTTAACCCTCAAACCTCCTACTGTATCAACATATTACACCCGCCAATCTGCTGCTGCTGATACACAACCATCACCATCTTGCTATATGATGCTTGAATTAGACATGGGATCCATTTAAATCTATGTTGATTAATTGACACCTGTTAGTGTGTGCTTGTTCTATTGTGTTTTTCCGGGAATGAagtaaaagaagaagaaaacatgtGAGAAGGTGTAAGAGACAGGCAAGGACAGCAGATGTATTTCACAGATTGTAGAGAGACACGCGGTAGATACTGTAGCTCCTAAAACTGTCATgtctaaaacacaaacacacatacagttgaagtcgtaagtttacatacacttaggttggagtcattaaaacttgtttttcaaccactccacaaatgtcttgttaacaaactatagttttggcatgacacaagtaatttttccaacaattgtttacaggcagattatttcacgtatatttcactgtatcacaattccagtgggtcagaagtttacatacactaagttgactgtgcctttaaacagcttggaaaattccagaaaatgatgtcatggctttagaagtttctgataggctaattgacatcatttgagtcaaatgaaggtgtacctgtggatgtatttcaaagcctaacttcaaactcagtgcctctttgcttgacatactGGGAAAATCAAgataaatcagtcaagacctcagacctccacaagtctggttcatccttgggaggaatTTCCAAACGCCCGATGaacggtaccacgttcatctgtacaaacaatagtacacaagtataaacaccatgggaccacgcagccatcatactgctcaggaagaagatgcgttctgtctcctagagatgaacgtactttgctgcGAGAAGTACCttcaggtacaaaagtatctatatccacagtaaaacgagtcctatatcaacataacctgaaaggcgtctcagcaaggaagaagccacttctccaaaaccgccagactacggttttcaactgcacatggggacaaagatcctacattttggagcagtagctgaagaacaccatcccaactgtgaagcacgggggtggcagcatcatcttgtgggggtgctttgctgcaggaaggacttgtgcacttcacaatatagatggcatcatgaggcaggaaaactATGTagatatatattgaagcaacatctcaagacatcagtcaggaagttaaagcttggtcgcaaatgggccttccaaatggacaatgactccaagcatacttccaaagttgtggcaaaaaagacaacaaagtcaaggtattggagtgaccatcacaaagccctgacctcaatcctatcgaacatttgtgggcagaactgaaaaagtatgtgcgagcaaggaggcctagaaacctgactcagttacagcagctctgtcaggaggaatgggccagaattcacccaacttacgtTTCCCCAAAACGTTTTACCcaacttaaacaatttaaaggcaatgataccaaatactaattgagtgtatgtaaacttatgacccactgtgaatgtgatgaaataaataaaagctgaaataaataattatctttactattattctgacatttcacattcttaaaataaagtggtgatcctaactgacctaagacagggagtttaaatgtatttggctaaggtgtatgtaaacttccgacttcaactgtacatccctGGTTGTTGAATAGACCTGCGAAATGCAATCTTTCCTCAGTCAGAACTGGCTGTACTGGCACAGCCTTACCGTAGAGTTGAGTTAGCTGGTCCTGTGCTCCACTATCCTTACCTCTCATGATGATCTACATGGATTGGTTTGTTACTTGTGCTGTTCTCTTCTCTGTGTTACACAGGCAGATGTTTCTCTGCACTAAAAACTGGAAAACAAAATGGCAGTGAAAAGTTGAGGATTTTTGCTCTGTTGTGGTTTTGAACAGTGCTGTATCAGTCATATCTTACTCAATAATGTTTACAATTGCATTGCGTTCTCATTTCTAAAAGAGATTAGCAATTTCAACAAGTGACAAATCGAGGAGCTCAGTGCTGAGAACCATTTCGAATTTCCCCTTTATATTGCACTGTGTTGTACAAATGTGCTGAATGTTTTAGTTTTAGAGGCTTTTTTGTCAAGTATTTATGTTTTTACAGCACTTTTCCTCATCCAAACTCATCCCTTGAAAGAGTTGCTGATCAATTTCAACCTTTTCACATTAATTGAAAACATTTTGTGAATGATTCCTAATGGAAAAGTAATAATGAATGTCagatcttttcttttttttaaatttcaatcTCAAATTCCACCACACACTTGTCCAAACTATGCATGGGAAATAAACGTCCTGAGAGACATTAAAGAGTGTCAAA
>TU197931
GCCATCGATCCTCTTCTAAATAGTGTTTGTTTTCATGTCTCTGTGTAACGTCATATTACTATAATATGATACGTATATAATGTATAATGCACCAACCCTGTTGTTTGAATAGATGTCTCATTGTTCTGATGCCCTCTTCTTTCAACAGAGCCAAGGACACATGAATCCCTTTGTGcacctgatgatgatgatgaggaggaggagaaaggtccAACACACACTaaggaggagatggaagaggaggaagactgtCTACATTGGAGGGGTCCAGATGATCTGGAGCTGAGTGATGATGCTGCTTACCCCAAGGTCCTGGCCTGCAGGGACCTCACCACCGACACACTATGGGGGCCATATGCTGGGATCGTCCAAACAGAAGATGTGGGAGATGACCAGGAGTCAGAGGTGAAGGTTCAAAGTGCATGGAGGGAGATGTTAGAGGTCAAGTAGAGGGTTGGGTTCTGTCAATGGGACAGGATAATTAAAAAATGACTTATCACCCATTAATCTGTCAG
>TU197928
ttacatacactaagttgactgtgcctttaaacagcttggaaaattccagaaaatgatgtcatggctttagaagtttctgataggctaattgacatcatttgagtcaaatgaaggtgtacctgtggatgtatttcaaagcctaacttcaaactcagtgcctctttgcttgacatactGGGAAAATCAAgataaatcagtcaagacctcagacctccacaagtctggttcatccttgggaggaatTTCCAAACGCCCGATGaacggtaccacgttcatctgtacaaacaatagtacacaagtataaacaccatgggaccacgcagccatcatactgctcaggaagaagatgcgttctgtctcctagagatgaacgtactttgctgcGAGAAGTACCttcaggtacaaaagtatctatatccacagtaaaacgagtcctatatcaacataacctgaaaggcgtctcagcaaggaagaagccacttctccaaaaccgccagactacggttttcaactgcacatggggacaaagatcctacattttggagcagtagctgaagaacaccatcccaactgtgaagcacgggggtggcagcatcatcttgtgggggtgctttgctgcaggaaggacttgtgcacttcacaatatagatggcatcatgaggcaggaaaactATGTagatatatattgaagcaacatctcaagacatcagtcaggaagttaaagcttggtcgcaaatgggccttccaaatggacaatgactccaagcatacttccaaagttgtggcaaaaaagacaacaaagtcaaggtattggagtgaccatcacaaagccctgacctcaatcctatcgaacatttgtgggcagaactgaaaaagtatgtgcgagcaaggaggcctagaaacctgactcagttacagcagctctgtcaggaggaatgggccagaattcacccaacttacgtTTCCCCAAAACGTTTTACCcaacttaaacaatttaaaggcaatgataccaaatactaattgagtgtatgtaaacttccgacttcaactgtacatccctGGTTGTTGAATAGACCTGCGAAATGCAATCTTTCCTCAGTCAGAACTGGCTGTACTGGCACAGCCTTACCGTAGAGTTGAGTTAGCTGGTCCTGTGCTCCACTATCCTTACCTCTCATGATGATCTACATGGATTGGTTTGTTACTTGTGCTGTTCTCTTCTCTGTGTTACACAGGCAGATGTTTCTCTGCACTAAAAACTGGAAAACAAAATGGCAGTGAAAAGTTGAGGATTTTTGCTCTGTTGTGGTTTTGAACAGTGCTGTATCAGTCATATCTTACTCAATAATGTTTACAATTGCATTGCGTTCTCATTTCTAAAAGAGATTAGCAATTTCAACAAGTGACAAATCGAGGAGCTCAGTGCTGAGAACCATTTCGAATTTCCCCTTTATATTGCACTGTGTTGTACAAATGTGCTGAATGTTTTAGTTTTAGAGGCTTTTTTGTCAAGTATTTATGTTTTTACAGCACTTTTCCTCATCCAAACTCATCCCTTGAAAGAGTTGCTGATCAATTTCAACCTTTTCACATTAATTGAAAACATTTTGTGAATGATTCCTAATGGAAAAGTAATAATGAATGTCagatcttttcttttttttaaatttcaatcTCAAATTCCACCACACACTTGTCCAAACTATGCATGGGAAATAAACGTCCTGAGAGACATTAAA

Function

symbol description
zfpm1 Predicted to enable DNA binding activity; RNA polymerase II-specific DNA-binding transcription factor binding activity; and metal ion binding activity. Acts upstream of or within heart looping and hemopoiesis. Predicted to be active in nucleus. Is expressed in several structures, including intermediate cell mass of mesoderm; lateral plate mesoderm; myeloid cell; otic vesicle; and pericardial region. Orthologous to human ZFPM1 (zinc finger protein, FOG family member 1).

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021569506.2 False 7556 mRNA 0.50 9 66900017 66995521
TU197931 False 515 TUCP 0.46 2 66955524 66972455
TU197928 True 1739 lncRNA 0.41 2 66993617 66995511

Neighbor

gene id symbol gene type direction distance location
foxl1 LOC106560889 coding upstream 71382 66825247 ~ 66828635 (+)
LOC110501804 plcg2 coding upstream 168041 66717186 ~ 66731976 (+)
meak7 tldc1 coding upstream 188585 66705302 ~ 66711432 (+)
LOC110494385 cotl1 coding upstream 211512 66677754 ~ 66688505 (+)
LOC110494358 LOC106560893 coding upstream 234407 66656844 ~ 66665610 (+)
LOC110494462 zc3h18 coding downstream 140421 67135942 ~ 67176522 (+)
il17c2 il17c2 coding downstream 182140 67177661 ~ 67180759 (+)
tango6 tango6 coding downstream 185579 67181100 ~ 67214348 (+)
has3 has3 coding downstream 221271 67216792 ~ 67230218 (+)
LOC110494472 utp4 coding downstream 236757 67232278 ~ 67239902 (+)
G174009 NA non-coding upstream 30361 66869454 ~ 66869656 (+)
G173989 NA non-coding upstream 41093 66852207 ~ 66858924 (+)
G173915 LOC106560887 non-coding upstream 125763 66773472 ~ 66774254 (+)
G173923 NA non-coding upstream 164890 66733251 ~ 66735127 (+)
G173902 NA non-coding upstream 208734 66691006 ~ 66691283 (+)
G174150 NA non-coding downstream 87014 67082535 ~ 67082965 (+)
G174151 NA non-coding downstream 87451 67082972 ~ 67083335 (+)
G174155 NA non-coding downstream 92272 67087793 ~ 67088059 (+)
G174244 NA non-coding downstream 219132 67214653 ~ 67214887 (+)
G173938 LOC106573687 other upstream 157804 66741820 ~ 66742213 (+)
LOC110494096 LOC106561115 other upstream 633994 66262594 ~ 66266024 (+)
G172639 NA other upstream 963884 65935596 ~ 65936133 (+)
jph3 jph3 other upstream 1259041 65593468 ~ 65648660 (+)
map1lc3b map1lc3b other upstream 1363230 65531126 ~ 65536787 (+)
hsbp1b LOC106561110 other downstream 490642 67486128 ~ 67488205 (+)
G176612 LOC100846954 other downstream 1865317 68860838 ~ 68861368 (+)
G176725 lonp2 other downstream 1960742 68956263 ~ 68957886 (+)
G177067 NA other downstream 2461037 69456558 ~ 69457433 (+)
G174083 NA non-coding upstream 14568 66972995 ~ 66979049 (+)
G174051 NA non-coding upstream 73634 66919751 ~ 66919983 (+)
G174049 NA non-coding upstream 74615 66918779 ~ 66919002 (+)
LOC110494451 zfpm1 other upstream 21162 66900017 ~ 66995521 (+)

Expression


Co-expression Network