LOC110494458 (LOC106573692)


Basic Information

Item Value
gene id LOC110494458
gene name LOC106573692
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 67088227 ~ 67113877 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036934666.1
ATGACAGAAAATGTAAGCTCAAGGATGGACACCCCAACCAACATTTCCTTGGTGGGCCCAGGGGACCCCATATCTCAGTCTCTGGAGTACAAGACTGTGGCAGTGTTCCTGGTTCTGCTGGTCTGTGGACTTGGCATTGTGGGTAATATCATGGTGGTTCTGGTGGTCCTCACCACGCGACACATGCGTACGCCCACCAACTGCTACCTGGTCAGCCTGGCCATAGCAGACCTGACCGTGCTGGTGGCCGCTGGTCTGCCTAATGTGTCAGACAGCCTGATGGGCACCTGGGTGTTTGGGCATGCTGGCTGCCTTGGTATCACCTACCTTCAGTATCTTGGCATCAATGTGTCCTCCTGCTCCATTACAGCCTTCACTGTGGAGAGGTACATTGCTATCTGCCACCCAATGAGGGCCCAGACAGTGTGTACGTTGTCCCGGGCCAAGCGGATCATAGCAGGGGTGTGGGTGTTCACCTGTGTCTACTGCATGCTGTGGTTCTTCCTGGTGGACATCCAGGTAATGAAGGACAGCACCATCCAGTGTGGCTACAAGGTGTCCCGTGACCTCTACCTCCCCATTTACCTCATTGACTTTGCCATCTTCTACGTGATCCCTCTGCTCCTGGCCATAGTCCTGTACGGCCTCATTGCCCGCGTCCTGTACCTCAACCAACTCCCCAACCGGCCCGACGCGGGTACAGTCTCTGCTGGCGCCACCACGCTCCGCAGGAGCTGCAAGGAACCAGCAGACGAAGGAAAAGGGGGTCGTCAGGGCCGCCCGAAGAGTGTGCTCTTCTCCAGGAAACAGGTCACCAAGATGCTGTCAGTGGTGGTGATCCTGTTCGCCTTACTGTGGATGCCCTACCGGACCTTGGTCCTTATTAACTCCTTCGTTGACACACCTTACCTGGACGCCTGGTTTGTACTGTTCTGTCGGATTTGTATGTATGCCAACAGTGCCATCAACCCTGTAGTGTACAACCTGATGTCTCAGAAGTTCCGTTCAGCATTCCGCGGGCTCTCCCAGTGCCAGAGGCTGGAGGCCCACTGTACACTCTCCATGAACCAGACCGGCTACAGCATGGCCAGGGACCCACGCACCTCCCAACAGACTAGCAACGAGACCAAACAGGGGGCAAGGAGAGTGACCTGCACTGACACAGTGACAGAGTGGCAGAGCAAAGACACCTCCTCAGCCCAAGAGAGGAAGGATCTGCATCAccggaaggaagagaggaaagacaCAAGCTTTGGTGAGATCAACTCCACACCTGGGCAATCTGAGATCAACTCCACACCTGGGCAATCTGAGATCAACTCCACACCTGGGCAATCTGAGATCAACTCCACACCTGGGCAATCTGAGATCAACTCCACACCTGGGCAATCTGAGATCAACTCCACACCTGGGCAATCTGAGATCAACTCCACACCTGGGCAATCTGAGATCAACTCCACATCTGGGCAAACTCAGATCAAAGCCACACCAGGGCAACATGAGATGAGTGAGGCAGGAATTAATCACACAGTGCTGTAG

Function

NR:

description
thyrotropin-releasing hormone receptor-like

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0016020 membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
K04282 TRHR; thyrotropin-releasing hormone receptor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036934666.1 True 1539 mRNA 0.55 4 67088227 67113877

Neighbor

gene id symbol gene type direction distance location
ces3 LOC100380756 coding downstream 229222 66854306 ~ 66859005 (-)
LOC110494421 LOC106560888 coding downstream 297904 66775234 ~ 66790323 (-)
LOC110494415 LOC106560887 coding downstream 313906 66735181 ~ 66774321 (-)
LOC110494363 klhl36 coding downstream 409458 66667874 ~ 66678769 (-)
LOC110494342 LOC106560894 coding downstream 444638 66641062 ~ 66643589 (-)
chtf8 chtf8 coding upstream 116243 67230120 ~ 67232289 (-)
LOC110494484 wfdc1 coding upstream 126168 67240045 ~ 67251423 (-)
si:dkey-246g23.4 LOC106560877 coding upstream 151578 67265455 ~ 67281288 (-)
LOC110494509 LOC106560876 coding upstream 188323 67302200 ~ 67304139 (-)
LOC110501813 LOC106560876 coding upstream 235407 67349284 ~ 67354722 (-)
G174756 NA non-coding downstream 206 67087801 ~ 67088021 (-)
G174755 NA non-coding downstream 515 67087498 ~ 67087712 (-)
G174646 NA non-coding downstream 154009 66933999 ~ 66934218 (-)
G174640 NA non-coding downstream 157921 66930099 ~ 66930306 (-)
G174639 NA non-coding downstream 159154 66928724 ~ 66929073 (-)
G174814 NA non-coding upstream 114942 67228819 ~ 67229046 (-)
G174882 NA non-coding upstream 150575 67264452 ~ 67264669 (-)
G174902 NA non-coding upstream 198748 67312625 ~ 67312845 (-)
G174903 NA non-coding upstream 201281 67315158 ~ 67315373 (-)
G174904 NA non-coding upstream 202846 67316723 ~ 67316986 (-)
G174505 NA other downstream 395377 66692408 ~ 66692850 (-)
G173696 LOC106560906 other downstream 697461 66375226 ~ 66390766 (-)
G173675 NA other downstream 749841 66335412 ~ 66338386 (-)
LOC110494122 LOC106560915 other downstream 789913 66277821 ~ 66299637 (-)
G173431 NA other downstream 1165998 65921850 ~ 65922229 (-)
G177487 NA other upstream 2477258 69591135 ~ 69591722 (-)
LOC110494902 LOC106560839 other upstream 2579732 69648833 ~ 69767366 (-)
LOC110501848 NA other upstream 3446645 70552263 ~ 70642587 (-)
fam169b fam169b other upstream 3655281 70769140 ~ 70773282 (-)
G179215 NA other upstream 3791495 70905372 ~ 70906254 (-)

Expression


Co-expression Network