chtf8 (chtf8)


Basic Information

Item Value
gene id chtf8
gene name chtf8
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 67230120 ~ 67232289 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021569617.2
CGCGACTGTGCGCCGGAAGAAGGTGGTACATGTTGCTGGCGGGAAAAACATGAAAACAATCAGGATTTGTGAAAGACAGAATAAGCGTTAACGCATCATTATATGTACCTAACAATGTCTAGTTAAGTGCCTATGTTgcatctctcttcttctcctcaccCCCTCTGTGTTTTAGTTATATTTCTGCGAGCAGTACGATGGTTCAAATAATCATAAATTCAAGTGTGGATGGGACTGGTCCTGCTGAGTGGCTTCTGGTTGAACTCCAGGGGGAGATGGTGTCCAGGCAGAACTCTGGACTGTCTGGGAACCTGATGGGAGATCTGCTCTACACCAAAGAGGGTGTGCCTGTGCTCATTGTGGGACACCACATCCTCTATGGAAAGGTGGTCAAACTGGAGAAGCCCTTCGCTGTCCTGATGAAACACTCCGGCCTCCCGCAGGGGGACGAGGTTCCCATGGAAACCAACCATCAGAACCCCACCACCTACTCTGTCGCCGCCCTCATCAAGAAGAAGCTTATCTTCAAGACTCGCCCAAAGCCCATCATCACTAATGTACCCAAGAAAGTTTAGTGAAGTACTTGGTCATATGCATTAGGGCTCACTGTCGAAAAACCATTTTTACTGAAAAATTTGACAAGTTCAGATCGTCCCTCTTTGTTTCAGTGTTCCGTTTTGTGCCTAATGACCCTGGTCACCTCTGTGGGAGGAAAGTACATGCTGCTCTCTTAATGACTTCAAATCCACAAGTATGGAGCACACAGTGCAAGACTGTATTTGGGACACACTCCTCTGGCTTGAGGTTATCGACCACTGGAACTAGACTGTGTACATATTTGTTTAGATATGTAAGTGGTTATGCTCCTCGAATTTGCTGTATGCGGTGGTGTATTAGTAAAATCAAGATATTTCAATCATTTTTGCATTTTTGTGACATGATTTAATGTGTTGATATGCCATTtgtactgtgtttattttcagatgGGAAAGAAATCAGTACAACAGTGGAATGAGCATGTTTTTATTCAgatacaaaaacatacagtttttcAACCGCTGTACaagtgtaaaaaataaatgttctgaTTGAAATTTAAATACAAAA

Function

symbol description
chtf8 Predicted to act upstream of or within mitotic sister chromatid cohesion. Predicted to be part of Ctf18 RFC-like complex. Orthologous to human CHTF8 (chromosome transmission fidelity factor 8).

NR:

description
chromosome transmission fidelity protein 8 homolog

GO: NA

KEGG:

id description
K11270 CTF8; chromosome transmission fidelity protein 8

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021569617.2 True 1107 mRNA 0.43 3 67230120 67232289

Neighbor

gene id symbol gene type direction distance location
LOC110494458 LOC106573692 coding downstream 116243 67088227 ~ 67113877 (-)
ces3 LOC100380756 coding downstream 371115 66854306 ~ 66859005 (-)
LOC110494421 LOC106560888 coding downstream 439797 66775234 ~ 66790323 (-)
LOC110494415 LOC106560887 coding downstream 455799 66735181 ~ 66774321 (-)
LOC110494363 klhl36 coding downstream 551351 66667874 ~ 66678769 (-)
LOC110494484 wfdc1 coding upstream 7756 67240045 ~ 67251423 (-)
si:dkey-246g23.4 LOC106560877 coding upstream 33166 67265455 ~ 67281288 (-)
LOC110494509 LOC106560876 coding upstream 69911 67302200 ~ 67304139 (-)
LOC110501813 LOC106560876 coding upstream 116995 67349284 ~ 67354722 (-)
si:dkey-246g23.2 LOC106560875 coding upstream 170852 67403141 ~ 67486026 (-)
G174814 NA non-coding downstream 1074 67228819 ~ 67229046 (-)
G174756 NA non-coding downstream 142099 67087801 ~ 67088021 (-)
G174755 NA non-coding downstream 142408 67087498 ~ 67087712 (-)
G174646 NA non-coding downstream 295902 66933999 ~ 66934218 (-)
G174640 NA non-coding downstream 299814 66930099 ~ 66930306 (-)
G174882 NA non-coding upstream 32163 67264452 ~ 67264669 (-)
G174902 NA non-coding upstream 80336 67312625 ~ 67312845 (-)
G174903 NA non-coding upstream 82869 67315158 ~ 67315373 (-)
G174904 NA non-coding upstream 84434 67316723 ~ 67316986 (-)
G174933 NA non-coding upstream 132631 67364920 ~ 67365256 (-)
G174505 NA other downstream 537270 66692408 ~ 66692850 (-)
G173696 LOC106560906 other downstream 839354 66375226 ~ 66390766 (-)
G173675 NA other downstream 891734 66335412 ~ 66338386 (-)
LOC110494122 LOC106560915 other downstream 931806 66277821 ~ 66299637 (-)
G173431 NA other downstream 1307891 65921850 ~ 65922229 (-)
G177487 NA other upstream 2358846 69591135 ~ 69591722 (-)
LOC110494902 LOC106560839 other upstream 2461320 69648833 ~ 69767366 (-)
LOC110501848 NA other upstream 3328233 70552263 ~ 70642587 (-)
fam169b fam169b other upstream 3536869 70769140 ~ 70773282 (-)
G179215 NA other upstream 3673083 70905372 ~ 70906254 (-)

Expression


Co-expression Network