LOC110494472 (utp4)


Basic Information

Item Value
gene id LOC110494472
gene name utp4
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 67232278 ~ 67239902 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021569567.2
CGCACAGTCGCGTCACTCACATCTAGGGTTTCCGGTTCAAAGGTGTCCAACGTGGTGTTTGCTGTAATTCAACGTTTGAAACTCTTAGCAATGAACGTTTGGTGAAAGTGAAGAAAATACTAAAGAAGGGGGTGATATAAATACGCAACAATGGGGGAGTTCAAAGTGCACCGGGTTCGGTTTTTCGACTACATGCCCACAGCGATCAGAGCCATGGCATTCAATGCCCACACAGAGAGACTAGCCCTTGCACGAATGGATGGGAGTGTCGAGATTTTCAACTTCACTGACCACTATTTCCAGGAAAAAGTTATCCCAGGGAAAGACTCCCGATCCACTGAGTCTCTGTGTTGGGTTGGAGGACGCCTTTTCAGTGCTGGCCTGAATGGAGAGATCACAGAATATGACCTGGAAAACCTAAGACCCAAGTACTCCCTGGAGGCATATGGGGGCCCCATTTGGACCATAATCAGCAATACTCAAGGGACACAATTAGCGATTGGATGTGAAGATGGGACAGTGAAGTTGTTTGAAGTACTTGAAGAGCACATACAGTTTGAGCGCAATCTGGACAGACAGAAAGGTCGCATCATATCCCTCTCCTGGCACCCCTCTGGCACACACATCGCTGCTGGCATGATGGACATGATCCGTGTCTTTGATGTTCCAACTGGTCATGCTGTACAGAGGCTCCTGGTGGACCGGGGCTTTGGAGGCTCTAAGAGTCAGGAGACAGTAGTCTGGAGCGTGGCCTTCCTGTCAGACCATACTGTTGTAAGCGGGGACTCTGCTGGGAAGGTCCAAGTCTGGGACGGACACACCGGCACTCTTGTCAAAACACACCTGGTGACCAAGTGGGATGTGctggcactgtctgtctctaagGACGAGAGCAGTGTGGTGGCAGGGACGTCAGAAGGCACTGTGATCCAGTTCCAGTTCATTGCTCCTACTCTGCATCAGCAGCAGGACAAGGAGTGGGTCAGAACCAGGACCTTCAAGAACCACACGCATGATGTCAGAGCCCTGGCTGAGATCGAGACTGCCATCGTCTCTGGAGGCATGGATACCCACCTTGTAGTGAGACCCCTCTTGGAGAAGTTTGATGAGAAGTCACACGCTTCAGGACTTCGGAAGATCCACTTTCCCCATCGGAATCTAGTATCCTGTGCGAAGAAGGCAGGACTACTGCTCTTCCAGTTCCCTGGTCAGCTGGAGCTGTGGAGACTGGGAGATAGTGATGGACATGGGAAGCCAGGAGACCGCTTGCCTCTGAAGAGGAAGCCGGAGAAACTCCTCCTTCTGAAGAGAAAGGGTGAAGATCATATCTGCTGCAGTGCCCTGTCCTCCTGTGGAGGATGGCTAGCTTATTCCACCGTGTCCTGCGTGCGTATCTACAGGCTGCAGACGGACAATAATAACATCAGTATTACCAAGGTATCCAAACTCCCAAAGGCTCTACGCTCTGCACACCAGCTCTGCTTCTCCTCGGACTCCTCCAAGATGTTTGCTGCCtccagccaatcatcagtcctCGTTATTGCTCTTACCCAGTCTGAGTGCAAGTATGTGCACACCCTCAAGCCCAAGTCAGGGTCCAGGCAGCCCATTCACCTAATGACTACCAGTGTAGATGGGAAGTGGCTGGCGGCCGCAAATAGTGACTGTGAGATCCGCGTCTACAATCTACAGAAACTAAAGCTCCATTGTATAGTACCTGTTTATGGTTCCTGTCCCAGTGCCATGGGGATCCACCCCACCACCAACAACATGACAGTGGTGCACGCTGACCAACAGTTATTTGAGTACTCTATAGTGGAGAAGCAGTACACAGACTGGAGCCGAAAGCTGCAGAAGCAGGGGCTCCACAACGTGTGGTTGGACCGGGACACACCTGTCACCCATGTGACCTTCAACCCGAAAAACCCAAATCAAGTTGTCCTGCACGACATGCACATGTTCTGCATAATCGACCAAAGTCTGCCCCTCCCTGACCAGAAGACCCAGTTTTACAATCAGATGACCCTCAGGAGCCTATCAGAGCAGGAGAGGCCCAGTCACCTCCATGCGTTCAAAATATGCAAAACCTTCCAGGACCTGCTGTGTGTGAGCCTGTTGGATGACCAGTCTCTGGTGGTGGTGGAGCGCCCTCTCCTGGCCATCACATCTCAGCTGCCTGCTCCAGTCCGACAGAAAAAGTTTGCAACATAAACATGGCCGAGAAGTGTGTTTTTATGTTTGTCTGTGGCTGCACTTCAATTCTCTAACCTTCTCCCTGAGGTGGACATACATTCATTGGATTTAAAAAGAATGCCATTTCAGGGAGCAGGGGAGGGAATCGGAACACAGCCTGTGTCTTCACCCCTGACCCATGCTTTGTAAAGACTGTTTGATACGTTAATAAATGAAATATTTACTGTAA
>TU198150
ATGCTGACTGTTCTGTGGTGCATGTCTGTAGTTATTTGAGTACTCTATAGTGGAGAAGCAGTACACAGACTGGAGCCGAAAGCTGCAGAAGCAGGGGCTCCACAACGTGTGGTTGGACCGGGACACACCTGTCACCCATGTGACCTTCAACCCGAAAAACCCAAATCAAGTTGTCCTGCACGACATGCACATGTTCTGCATAATCGACCAAAGTCTGCCCCTCCCTGACCAGAAGACCCAGTTTTACAATCAGATGACCCTCAGGAGCCTATCAGAGCAGGAGAGGCCCAGTCACCTCCATGCGTTCAAAATATGCAAAACCTTCCAGGACCTGCTGTGTGTGAGCCTGTTGGATGACCAGTCTCTGGTGGTGGTGGAGCGCCCTCTCCTGGCCATCACATCTCAGCTGCCTGCTCCAGTCCGACAGAAAAAGTTTGCAACATAAACATGGCCGAGAAGTGTGTTTTTATGTTTGTCTGTGGCTGCACTTCAATTCTCTAACCTTCTCCCTGAGGTGGACATACATTCATTGGATTTAAAAAGAATGCCATTTCAGGGAGCAGGGGAGGGAATCGGAACACAGCCTGTGTCTTCACCCCTGACCCATGCTTTGTAAAGACTGTTTGATACGTTAATAAATGAAATATTTA

Function

symbol description
utp4 Acts upstream of or within hepaticobiliary system process. Predicted to be part of 90S preribosome; small-subunit processome; and t-UTP complex. Is expressed in several structures, including alar plate midbrain region; digestive system; immature eye; nervous system; and segmental plate. Human ortholog(s) of this gene implicated in cholestasis and primary biliary cholangitis. Orthologous to human UTP4 (UTP4 small subunit processome component).

NR:

description
U3 small nucleolar RNA-associated protein 4 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021569567.2 False 2422 mRNA 0.51 17 67232278 67239902
TU198150 True 650 TUCP 0.49 3 67238890 67239896

Neighbor

gene id symbol gene type direction distance location
has3 has3 coding upstream 2060 67216792 ~ 67230218 (+)
tango6 tango6 coding upstream 17930 67181100 ~ 67214348 (+)
il17c2 il17c2 coding upstream 51519 67177661 ~ 67180759 (+)
LOC110494462 zc3h18 coding upstream 55756 67135942 ~ 67176522 (+)
LOC110494451 zfpm1 coding upstream 236757 66900017 ~ 66995521 (+)
hsbp1b LOC106561110 coding downstream 246226 67486128 ~ 67488205 (+)
LOC110494554 LOC106560874 coding downstream 284508 67524410 ~ 67536975 (+)
LOC110501822 znf423 coding downstream 1163757 68403659 ~ 68551466 (+)
si:ch211-212o1.2 LOC106560866 coding downstream 1313852 68553754 ~ 68592859 (+)
cbln1 cbln1 coding downstream 1405573 68645475 ~ 68653500 (+)
G174244 NA non-coding upstream 17391 67214653 ~ 67214887 (+)
G174155 NA non-coding upstream 144219 67087793 ~ 67088059 (+)
G174151 NA non-coding upstream 148943 67082972 ~ 67083335 (+)
G174268 NA non-coding downstream 17051 67256953 ~ 67257215 (+)
G174273 NA non-coding downstream 23273 67263175 ~ 67263455 (+)
G174319 NA non-coding downstream 114176 67354078 ~ 67354509 (+)
G174327 NA non-coding downstream 128252 67368154 ~ 67402620 (+)
G174377 NA non-coding downstream 218654 67458556 ~ 67461685 (+)
G173938 LOC106573687 other upstream 490065 66741820 ~ 66742213 (+)
LOC110494096 LOC106561115 other upstream 966255 66262594 ~ 66266024 (+)
G172639 NA other upstream 1296145 65935596 ~ 65936133 (+)
jph3 jph3 other upstream 1591302 65593468 ~ 65648660 (+)
G176612 LOC100846954 other downstream 1620936 68860838 ~ 68861368 (+)
G176725 lonp2 other downstream 1716361 68956263 ~ 68957886 (+)
G177067 NA other downstream 2216656 69456558 ~ 69457433 (+)
G177812 NA other downstream 2867384 70107286 ~ 70113440 (+)
G174254 NA non-coding upstream 2711 67235572 ~ 67236179 (+)

Expression


Co-expression Network