XLOC_020677 (rbbp5)


Basic Information

Item Value
gene id XLOC_020677
gene name rbbp5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 770001 ~ 784110 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00040882
ggagcgGACGCAGCGGAGGATGAGGAGGTGGACGTCACATCAGTCGACCCCATTCCTGCATTCTGCAGCAGTGACGAGGAGCTGGAGGACTATAAAGCTCTGCTGTATCTGCCGATCGCCCCGGAGGTTGAGGACCCAGAGGAGAACCCATTTGGCCCCCCGCCTGACGCCACGGCTCAGAACGCCAGCACTGACGACGGCTCCACCCACACCGGCCCCGGTGACAAGAAACGACACCCGTCAGCAGACGGAGCACCACCGAAGAAGAAGATCCGCACCACCACCATCGAGCTGCAGGGCGTCCCAAGCGACGAGGTGCACCCGCTGCTTGGCGTAAAAGGCGACAGTAAGTCGAAGAAGAAGGCGGCGGGGCGACCCAAGGGATCTAAAGGTAAAGACAAAGACTCTCCGTTCAGACCCAAAGTCAGCCGGGACAGAGTAGAGGGGCTGGGGACGCCAGgaaacctGGTCGCAGCGGTGTACAAACAGCACGAGGTGCAGGGTCTGGACTGAAGCTGAAGGCCATTGGCGCCCCCTGTTTGAGTGGATGAATGACTTTTTATGAACTCTATGGACTGGAATTGTTGTATAATTTCAGAAGGACTTAAACGCCGCAACCGATTGATTGGTTTCCACACATAGAGTGAGTGTTGGAAAGATCGaagcatgtttttttattgttttatatctaGAATAGATGGATCTGTCTCAGTCTACAAGCACTAGTTGGGTCATAGTCAGATATCTTATATTtgttttgtgtgctttttttccTGTGAGCTCTCTTGACTGGtcttttgtttataaatattaaaccAGCTTGTTTTTTTGA
>TCONS_00040883
GTTTTGGGGTCCTTTATCGCAGCTCAGCGCCAGTCGCGCAGCGGTGTTTTACGGGAGTGTTTGGATATTCTGAATCTTCGCATATTTTCGgctttacatttgtttatttcggCGGTTTTCTGTGTTCGTGGAGCCGCAAGGATGAATCTGGAGTTGCTCGAGTCGTTCGGGCAGAATTATCCAGAGGAGGCTGATGGGACTCTGGACTGCATCAGTATGGCTCTGACCTGTACGTTTAACCGCTGGGGAACACTACTCGCTGTCGGCTGCAATGACGGACGCATCGTCATCTGGGACTTCCTGACCAGAGGAATCGCCAAAATCATCAGTGCACACATACACCCTGTGTGCTCGCTCAGCTGGAGTCGGGATGGTCATAAGCTGGTCAGCGCCTCCACTGATAATATCGTCTCCCAGTGGGACGTCCTGACGGGAGATTGTGACCAGCGCTTCCGCTTTCCCTCCCCCATCCTCAAGCTGCAGTATCACCCCCGAGACATgaATAAGGTACTGGTGTGTCCCATGAAGTCTGCGCCCGTCTTGCTCACGCTGTCCGACTCCAAACACGTGGTTTTGCCGGTGGACGACGACTCGGATCTGAATGTAGTGGCGGCGTTTGACCGACGCGGAGAGTACATTTACACCGGAAACGCCAAGGGGAAGATTCTGGTTTTGAACACAGACACTCAGGATCTGGTGGCGTCCTTCAGAGTGACCACTGGAACCAGTAACACCACCGCCATCAAGTCCATCGAGTTTGCTCGCAAGGGCAGTTGTTTCCTCATCAACACAGCAGATCGAATCATTCGAGTTTACGACGGTCGAGAGATCCTGACCTGCGGCAGAGACGGAGAGCCTGAGCCCATGCAGAAACTGCAGGACCTGGtcaacaggACGCCGTGGAAGCGCTGCTGTTTCTCCGGTGACGGCGAGTATATCGTGGCGGGTTCTGCGCGTCAGCATGCGCTCTACATCTGGGAGAAGAGCATCGGCAACCTGGTGAAGATCCTGCACGGCACACGAGGAGAACTGCTGCTGGACGTAGCGtggcACCCGGTGCGGCCCATCATCGCCTCCATCTCCAGCGGCGTGGTCTCCATATGGGCTCAGAACCAAGTGgaGAACTGGAGTGCGTTCGCACCGGATTTTAAAGAGCTGGACGAGAATGTGGAGTACGAGGAGAGAGAGTCAGAGTTCGACATCGAGGACGAGGACAAGAGTGAACCAGAGCAgacaggagcgGACGCAGCGGAGGATGAGGAGGTGGACGTCACATCAGTCGACCCCATTCCTGCATTCTGCAGCAGTGACGAGGAGCTGGAGGACTATAAAGCTCTGCTGTATCTGCCGATCGCCCCGGAGGTTGAGGACCCAGAGGAGAACCCATTTGGCCCCCCGCCTGACGCCACGGCTCAGAACGCCAGCACTGACGACGGCTCCACCCACACCGGCCCCGGTGACAAGAAACGACACCCGTCAGCAGACGGAGCACCACCGAAGAAGAAGATCCGCACCACCACCATCGAGCTGCAGGGCGTCCCAAGCGACGAGGTGCACCCGCTGCTTGGCGTAAAAGGCGACAGTAAGTCGAAGAAGAAGGCGGCGGGGCGACCCAAGGGATCTAAAGgaaacctGGTCGCAGCGGTGTACAAACAGCACGAGGTGCAGGGTCTGGACTGAAGCTGAAGGCCATTGGCGCCCCCTGTTTGAGTGGATGAATGACTTTTTATGAACTCTATGGACTGGAATTGTTGTATAATTTCAGAAGGACTTAAACGCCGCAACCGATTGATTGGTTTCCACACATAGAGTGAGTGTTGGAAAGATCGaagcatgtttttttattgttttatatctaGAATAGATGGATCTGTCTCAGTCTACAAGCACTAGTTGGGTCATAGTCAGATATCTTATATTtgttttgtgtgctttttttccTGTGAGCTCTCTTGACTGGtcttttgtttataaatattaaaccAGCTTGTTTTTTTGA

Function

symbol description
rbbp5 Part of protein-containing complex. Orthologous to human RBBP5 (RB binding protein 5, histone lysine methyltransferase complex subunit).

GO:

id name namespace
GO:0048188 Set1C/COMPASS complex cellular_component
GO:0005515 protein binding molecular_function

KEGG:

id description
ko04934 Cushing syndrome
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-040426-886 Part of protein-containing complex. Orthologous to human RBBP5 (RB binding protein 5, histone lysine methyltransferase complex subunit).

Ensembl:

ensembl_id ENSDARG00000042147

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00040882 False 832 mRNA 0.52 4 770001 775776
TCONS_00040883 True 1999 mRNA 0.54 14 770001 784110

Neighbor

gene id symbol gene type direction distance location
XLOC_020676 NA coding downstream 9115 739300 ~ 760886 (-)
XLOC_020675 NA coding downstream 34757 733244 ~ 735244 (-)
XLOC_020674 arl8a coding downstream 51386 710759 ~ 718615 (-)
XLOC_020673 NA coding downstream 65094 700213 ~ 704907 (-)
XLOC_020672 NA coding downstream 72497 659917 ~ 697504 (-)
XLOC_020678 TMEM263 coding upstream 28738 812848 ~ 817479 (-)
XLOC_020679 cry4 coding upstream 35546 819656 ~ 834106 (-)
XLOC_020680 dram2b coding upstream 72759 856869 ~ 866196 (-)
XLOC_020681 cept1b coding upstream 82571 866681 ~ 881725 (-)
XLOC_020682 KCTD20 coding upstream 114021 898131 ~ 910926 (-)
XLOC_020664 NA non-coding downstream 374101 392619 ~ 395900 (-)
XLOC_020684 NA non-coding upstream 234235 1018345 ~ 1023531 (-)
XLOC_020686 NA non-coding upstream 372320 1156430 ~ 1168291 (-)
XLOC_020687 NA non-coding upstream 397974 1182084 ~ 1182479 (-)
XLOC_020689 CU570769.4 non-coding upstream 445796 1229906 ~ 1230022 (-)
XLOC_020690 NA non-coding upstream 476840 1260950 ~ 1269440 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000186_00272056_00278805 RBBP5 coding CI01000186 null 271668 ~ 279177 (+)
bowfin (Amia calva) AMCG00013874 rbbp5,LOC106583489 coding CM030125.1 CM030125.1 45807005 ~ 45816694 (-)