LOC110494509 (LOC106560876)


Basic Information

Item Value
gene id LOC110494509
gene name LOC106560876
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 67302200 ~ 67304139 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021569642.2
TGAGTGTTCTCAGAAGTGTCGCCATATGTTCATCGTGGAGACGGTGTGCGTGGCCTGGTTCTCCCTAGAGTGGATCCTGCGCTTCATTCAGGCTCGCAGCAAGCTGGAGTTCATCCGAGGGCCCCTCAACGTCATTGACGCCATGGCCATCCTGCCCTACTATGTGTCCCTGGTGGTGGATGAGGATGATCCGGCCCTGGACCATGAGAAGGCCGGGGGGACCAGCTACCTGGACAAGCTGGGCCTGGTGCTCCGGATCCTGAGGGCCCTGAGGATCCTGTATGTGATGAGGCTGGCCCGTCACTCTCTGGGCCTGCAGACCCTGGGCCTGACGGTGAGGAAGAGCACCAGAGAGTTTGGCCTTCTGCTGCTCTTCCTGTGTGTGGCCGTCACCCTCTTCTCCCCGTTGGTTCACCTGGCCGAGAGCGAGCTGACCGGAGCCCAGGACTTCAGCAGCATACCCGCCTCTTATTGGTGGGCCATTATCTCCATGACGACAGTGGGCTACGGCGACATGGTGCCACGCAGCATCCCTGGCCAGGTGGTGGCGCTGAGCAGCATTCTGAGTGGCATCCTCATCATGGCCTTCCCAGCCACCTCCATCTTCCACATGTTCTCTAAGAGCTACCAGGAGCTCAAGCAGGAGCACAACCGCCTGTTCAAAGAGGAGTGTGCGGCTGCAGCGGCCCTGGCGGCAACCAGCAGGGAAGGTCAGGAGGGGAGCGAGGACTTCCCTCCCCCAGGGCTGCGCCACATGTGCCCAGACACGGAGAGCACTCGCTCTCTGGAGTCCCTGTCCCTTCTTGAGAACGGTGGTGTGGTCTCAGGGAATAACCAGCATAGCCACAGCCCCAGGCTGCCAGCTGGAGCcttctagacagacagacaggcctcacCTGCCCTGGCCCACAGACCTCACAGCACACTAGGAACAGGGAGGCCTCAGCAGGCTTACTAATCACAGACTTAATAGAAGATGCAGTAAAAGATCCAATCCAAAGTAATTTTTTCCATGGCTGTCTTTATCTCTGAAAATATTGCGTAGCTCACCCACAACATAATTGTTTTAATTTTAGTCTCAATCTCTATCTGAGATCAGAATGTGCAGACCTGGGCCAATGGAAGCCATAGCCATCTGTCTACCCTAGACCCATCTGTACTGAGCTCAACTCTGCTGATTTTATTTCTGAGAGGCTTTGAAAGCTGTACTTTAAAAAAATCTCAGATGGATGCTTCTGACTCTCCCATGCTGAAtaaaccctctctctttctccctttgcAACAaatacaaagacacacacagactaacaCTGGATTTGGCTGCTTGAGTGTCTGGAGTCATGGGCATGGAGTTATTTGTCACTCCACCACATCTTCCGTTGTGACCTGCAGGAAGAGGATATTGGATGAGCAGTGTTCATAGTCCTTTTATAAtctacaggagacagagagccatCGGCATAGAATTAACTTTGTTAGGCTCCAAATAAAAACACAAGTAATCTCAACTACGCAGTTGTCATAGTTTTTTGTCTTTCTGGGAAGATATATCCTATCCTATTCCCTGAAAAGATAAATCAGAGAGGGTATGTGCCGGGTTGAAACATTAGTCCGTGTAAGTGAGATTAAGCTGCCAAGACGCAGCATCAtctgatgcaaaatgcatcaatACCAGCTGTAAgttatatatcttgaaaacttgattgctgacatgcaaaacattttgggactatatcaacaatggactaatgaaataaataccaaaagatagttgTTGTTTCTTTCTTTAAGGGCCCTACACACCCTACATAAACAGCCTACGTAAACAGAGTGATGGAGCAtcgtcaaatcaaactttatttgtcacatgcgccgaatgtaagtctagaccttaccatgaaatgcttacttacaagcccttaaccaacagtgtagttcaa

Function

NR:

description
PREDICTED: potassium voltage-gated channel subfamily G member 4-like

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0051260 protein homooligomerization biological_process
GO:0008076 voltage-gated potassium channel complex cellular_component
GO:0005251 delayed rectifier potassium channel activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021569642.2 True 1940 mRNA 0.50 1 67302200 67304139

Neighbor

gene id symbol gene type direction distance location
si:dkey-246g23.4 LOC106560877 coding downstream 20912 67265455 ~ 67281288 (-)
LOC110494484 wfdc1 coding downstream 50777 67240045 ~ 67251423 (-)
chtf8 chtf8 coding downstream 69911 67230120 ~ 67232289 (-)
LOC110494458 LOC106573692 coding downstream 188323 67088227 ~ 67113877 (-)
ces3 LOC100380756 coding downstream 443195 66854306 ~ 66859005 (-)
LOC110501813 LOC106560876 coding upstream 45145 67349284 ~ 67354722 (-)
si:dkey-246g23.2 LOC106560875 coding upstream 99002 67403141 ~ 67486026 (-)
zgc:173742 LOC106560872 coding upstream 187290 67491429 ~ 67523791 (-)
cdh13 LOC106560870 coding upstream 362047 67666186 ~ 68192893 (-)
lonp2 lonp2 coding upstream 1647198 68951337 ~ 68977698 (-)
G174882 NA non-coding downstream 37531 67264452 ~ 67264669 (-)
G174814 NA non-coding downstream 73154 67228819 ~ 67229046 (-)
G174756 NA non-coding downstream 214179 67087801 ~ 67088021 (-)
G174755 NA non-coding downstream 214488 67087498 ~ 67087712 (-)
G174646 NA non-coding downstream 367982 66933999 ~ 66934218 (-)
G174902 NA non-coding upstream 8486 67312625 ~ 67312845 (-)
G174903 NA non-coding upstream 11019 67315158 ~ 67315373 (-)
G174904 NA non-coding upstream 12584 67316723 ~ 67316986 (-)
G174933 NA non-coding upstream 60781 67364920 ~ 67365256 (-)
G174934 NA non-coding upstream 61149 67365288 ~ 67365488 (-)
G174505 NA other downstream 609350 66692408 ~ 66692850 (-)
G173696 LOC106560906 other downstream 911434 66375226 ~ 66390766 (-)
G173675 NA other downstream 963814 66335412 ~ 66338386 (-)
LOC110494122 LOC106560915 other downstream 1003886 66277821 ~ 66299637 (-)
G173431 NA other downstream 1379971 65921850 ~ 65922229 (-)
G177487 NA other upstream 2286996 69591135 ~ 69591722 (-)
LOC110494902 LOC106560839 other upstream 2389470 69648833 ~ 69767366 (-)
LOC110501848 NA other upstream 3256383 70552263 ~ 70642587 (-)
fam169b fam169b other upstream 3465019 70769140 ~ 70773282 (-)
G179215 NA other upstream 3601233 70905372 ~ 70906254 (-)

Expression


Co-expression Network