hsbp1b (LOC106561110)


Basic Information

Item Value
gene id hsbp1b
gene name LOC106561110
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 67486128 ~ 67488205 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021569688.2
CCGTCAGTTTCCTGCTTCAGTGTTCTCGCGAGACAACGTGTTTTGCATCTAGAGCTGCTGGTAGGGAAAGGGATCCTGAATTTATTTCAGCCAAAGCTATTTTTAGCTAGTTAGAGTTCATTGTACACCACTTCATAACACAAGTATCGTTCACAGGAAAAACATGGCAGAAACCGATCCAAAGTCAGTTCAGGACCTTACTAATGTGGTCCAGACGCTGCTGCAACAGATGCAGGACAAGTTCCAGACCATGTCTGACCAGATCATCGGGAGAATCGATGAGATGAGCACCCGCATTGATGACCTGGAGAAGAACATTGCCGACCTCATGACCCAGGCGGGCGTGGAGGAGATAGAAGGGGTCAAAGAACCACAGATGAAAGAAGGGCAAGGGTCATGAAGGTTGCCAAGTAACAAGATGTCAAGGATTTTCTCCAGGAGTAGCACACTTTTCCACTGTAACCATTCATTATTTTGATTTGGCGTGTTGTAAAGTTATTTTTTATATAAACTATTGCAATAAAAGTAACAGTTCTTATGTA
>TU198304
ACGTGTTTTGCATCTAGAGCTGCTGGTAGGGAAAGGGATCCTGAATTTATTTCAGCCAAAGCTATTTTTAGCTAGTTAGAGTTCATTGTACACCACTTCATAACACAAGTATCGTTCACAGGAAAAACATGGCAGAAACCGATCCAAAGTCAGTTCAGGACCTTACTAATGTGGTCCAGACGCTGCTGCAACAGATGCAGGACAAGTTCCAGACCATGTCTGACCAGATCATCGGGAGAATCGATGAGATGAGCACCCGCATTGATGACCTGGAGAAGAACATTGCCGACCTCATGACCCAGGCGGGCGTGGAGGAGATAGAAGGGGTCAAAGAACCACAGATGAAAGAAGGGCAAGGGTCATGAAGGTTGCCAAGTAACAAGATGTCAAGGATTTTCTCCAGGAGTAGCACACTTTTCCACTGTAACCATTCATTATTTTGATTTGGCGTGTTGTAAAGTTATTTTTTATATAAACTATTGCAATAAAAGTAACAGTTCTTA

Function

NR:

description
PREDICTED: heat shock factor-binding protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021569688.2 False 542 mRNA 0.44 4 67486128 67488205
TU198304 True 503 TUCP 0.39 4 67486163 67488201

Neighbor

gene id symbol gene type direction distance location
LOC110494472 utp4 coding upstream 246226 67232278 ~ 67239902 (+)
has3 has3 coding upstream 255910 67216792 ~ 67230218 (+)
tango6 tango6 coding upstream 271780 67181100 ~ 67214348 (+)
il17c2 il17c2 coding upstream 305369 67177661 ~ 67180759 (+)
LOC110494462 zc3h18 coding upstream 309606 67135942 ~ 67176522 (+)
LOC110494554 LOC106560874 coding downstream 36205 67524410 ~ 67536975 (+)
LOC110501822 znf423 coding downstream 915454 68403659 ~ 68551466 (+)
si:ch211-212o1.2 LOC106560866 coding downstream 1065549 68553754 ~ 68592859 (+)
cbln1 cbln1 coding downstream 1157270 68645475 ~ 68653500 (+)
LOC110494586 n4bp1 coding downstream 1394964 68883169 ~ 68909472 (+)
G174377 NA non-coding upstream 24443 67458556 ~ 67461685 (+)
G174327 NA non-coding upstream 83508 67368154 ~ 67402620 (+)
G174319 NA non-coding upstream 131619 67354078 ~ 67354509 (+)
G174273 NA non-coding upstream 222673 67263175 ~ 67263455 (+)
G174268 NA non-coding upstream 228913 67256953 ~ 67257215 (+)
G175062 NA non-coding downstream 70758 67558963 ~ 67559195 (+)
G175071 NA non-coding downstream 75850 67564055 ~ 67564635 (+)
G175078 NA non-coding downstream 85524 67573729 ~ 67573939 (+)
G175103 NA non-coding downstream 99355 67587560 ~ 67587920 (+)
G175108 yo84 non-coding downstream 104999 67593204 ~ 67593426 (+)
LOC110494451 zfpm1 other upstream 513673 66900017 ~ 66995521 (+)
G173938 LOC106573687 other upstream 743915 66741820 ~ 66742213 (+)
LOC110494096 LOC106561115 other upstream 1220105 66262594 ~ 66266024 (+)
G172639 NA other upstream 1549995 65935596 ~ 65936133 (+)
G176612 LOC100846954 other downstream 1372633 68860838 ~ 68861368 (+)
G176725 lonp2 other downstream 1468058 68956263 ~ 68957886 (+)
G177067 NA other downstream 1968353 69456558 ~ 69457433 (+)
G177812 NA other downstream 2619081 70107286 ~ 70113440 (+)
igf1ra igf1r other downstream 3307205 70794530 ~ 70905277 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000026_02659356_02660297 NA misc CI01000026 null 2658605 ~ 2660829 (+)