zgc:173742 (LOC106560872)


Basic Information

Item Value
gene id zgc:173742
gene name LOC106560872
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 67491429 ~ 67523791 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021569702.2
ATTCAGCCAATCAGACTCAATAGCGTTGAACTTTAAAAATCTCGCGCTACTTTCTACAGACAGAGCGGTTTGGAGATTTTAGCCGTACACTAAGACAGCTAATTCGCCATTCGTAGCAAAAGTAATCAGTCAAGGCCAAATTTAGCACACAGAAGAAGTGTGCTCTGTAGGAGATGGGCGGAGAGAAGAATGTTGGCCAAGCCAGAGGAGGGAAGGCCAAAGCGAAGACACCCAGACAGAGGCTGAGTGATAAGGAAGGAGGCTCGGGTGGAGACGCACCTAGGAAAAGTACAAAGCCCAATAAGGAAAGAACTAAAGCCACAGCAAAGTCTCAGCGGGTGGAAAAAGTAAAAGTTCAGAAAAAGGTCAAGGCTTTCAAAATGGAGAGCGTGGAGAGCTTTGATGATGATGTGAGGTTTAATTTGGCTGTAAAAGAGGAGCCTGAAGATGGAGACTTTGTGCCAGAAAAGAGGGGGAAAAAGAGGAAAAGACCAGAGGATGAACCCATGGAAGGTCCCTCGTGTTCCAGTGCAACCCCAACGTTAAATAGGAAATTGAAAGAGAAGGACGAGGCTGACCCGAGGACAGAGAATAACACAAAGGAGGGGATAAAGAAAGAGAAGAAGCCAAAGAAAGAGGAGGCGGagcatccagtcactacaaagaagAAGTCAAAGGAAGAGATTGAGGCAGCAAAAGCGTTGAAGATcaaaaaaagagaagaagaagagcagCAGCGCTGGAGATGGTGGGAAGAGGACAAGTATGAGGATGGTGTAAAATGGAAGTTTCTGGAGCACAGGGGTCCCTTTTTCCCACCGGAGTACCAGCATCTCCCAGACAACGTTAACTTCTACTACAATGGTAAAGTTGTGAAGCTGGGCCTTGCTGCAGAGGAGGTGGCCCTGTTCTTTGCTCAGATGCTTGACCATGAATACACCACAAAAGATGTGTTCCGAAACAACTTCTTCAAGGACTGGAGGAagGAGATGACCCTGGAGGAGAGGGTGCTAATTAGTGACCTGAATAAGTGTGACTTTCGGGAGCTCCACACCATGCACAAGGAGAAGGTGGAGGCTAGGAAGGCCATGAGCAAAGAGGAGAAACTGgtgatgAAAGAGGCCAATCAGAAGATAGTGGAGGAGTATGGCTTCTGTATACTGGACCACCACCGGGAACGCATCGGCAACTTTAAGATTGAGCCGCCAGGTCTCTTCCGAGGACGGGGGGAGCACCCCAAACAAGGCATGCTTAAGAAGAGGATCCAGCCGGAGGACGTCATCATCAACTGTGAAAAAAAGTCTTGTATCCCAGAGCCCCCTGCTGGTCACCACTGGAAGGAGGTTCGCCATGACAACACAGTGACCTGGCTGGCCAGCTGGACTGAGAATGTTCAGGGCTCCTGCAAGTATGTCATGCTCAACCCCAGCTCCAAACTCAAGGGTGAGAAGGACTGGGAGAAGTATGAGGTGGCCCGCCGGTTGAAAAGCTGTGTGAATGGGATCCGCCAGCAGTACCAGCAGGACATCAAGTCCAAACAGATGGAGATCCGCCAGAGAGCTGTGGCCCTTTACTTCATAGATaagCTGGCCCTGAGAGCGGGTAACGAGAAGGAGGAGGGCGAGACGGCGGACACGGTGGGCTGCTGCTCCCTGAGGGTGGAGCACATCACCCTCCACGACCTGCTGGAGGACAAGGAGTGTGTGGTGGAATTTGACTTCCTGGGTAAAGACTGTATCCGCTACTACAACAAGGTTCCCGTCACCAAGAGGGTGTTCAAGAACCTCAAGCtcttcatgaagaacaaggagccTGGAGACGACCTGTTTGATCGCCTCAACacgTGCTTGTTGAATAAGCACCTGTCATCCCTGCTGCCTGGCCTGACTGCTAAGGTATTCAGGACTTTCAACGCCTCCATCACCCTGCAGGAGCAGCTCCAACAGCTGTCCAACATGACCGACAAGCCGGCAGAGAAGCTGCTCTCCTACAACAGGGCCAACCGAGCTGTTGCAGTTCTGTGTAACCACCAGCGGGTGCCGCCAAAGACCTTTGATCAGTCTATGGCCAACCTCCAGTCCAAGATTGATGGCAGGAGGGAGCAGTTGGCCCTGGCCAAGAGTGAGCTGAAGCTGGCCAAGAAGGAGGTCAAAGCTCACAGTTCAGACAGCAAGCTGCAGGCggtggTGGAGCGTAAGAAGAAGGCTGTGCAGCGCTGTGAGGAGCAGCTTATGAAGATGGAGGTTCAGGCCACAAACCGAGAGGAGAACAAGCAGATCGCACTGGGCACCTCCAAACTCAACTACCTGGACCCACGCATCAGCGTGGCCTGGTGTAAGAACATGGAGGTGCCCCTGGACAAAATTTATAATAAATCTCAGAGGGATAAGTTTGCCTGGGCTGTTGACATGACCGGGGCAGATTTTTTATTCTAAGTCAGCCTCTACCCTTTAGTTCTACCTAAATGTAAAGACTAGGAGGCAGGTTTTATCCTCTGGTTTTAACTGCCCATGTGTTGAACTACAGAACCCTTGAATTTTTCACTCCACTTCACAGCAAGTTTTTTCCAAGTTTAATTGTTGTTggcactttattttatttttttactattattAATGGTAAACCAAGATGATCTTATAGAAAGTATGGATATCGTTTCCTTTTATAAACATTTAATAAAGTTTCTTAAGAAAATAATG

Function

NR:

description
DNA topoisomerase I, mitochondrial-like

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0006265 DNA topological change biological_process
GO:0005694 chromosome cellular_component
GO:0003917 DNA topoisomerase type I (single strand cut, ATP-independent) activity molecular_function
GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity molecular_function
GO:0003677 DNA binding molecular_function

KEGG:

id description
K03163 TOP1; DNA topoisomerase I

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021569702.2 True 2699 mRNA 0.49 20 67491429 67523791

Neighbor

gene id symbol gene type direction distance location
si:dkey-246g23.2 LOC106560875 coding downstream 5403 67403141 ~ 67486026 (-)
LOC110501813 LOC106560876 coding downstream 136707 67349284 ~ 67354722 (-)
LOC110494509 LOC106560876 coding downstream 187290 67302200 ~ 67304139 (-)
si:dkey-246g23.4 LOC106560877 coding downstream 210141 67265455 ~ 67281288 (-)
LOC110494484 wfdc1 coding downstream 240006 67240045 ~ 67251423 (-)
cdh13 LOC106560870 coding upstream 142395 67666186 ~ 68192893 (-)
lonp2 lonp2 coding upstream 1427546 68951337 ~ 68977698 (-)
il34 il-34 coding upstream 1456619 68980410 ~ 69003899 (-)
sf3b3 sf3b3 coding upstream 1486059 69009850 ~ 69059398 (-)
aars1 aars coding upstream 1572951 69096742 ~ 69111871 (-)
G175004 NA non-coding downstream 1592 67488479 ~ 67489837 (-)
G174977 NA non-coding downstream 68436 67422266 ~ 67422993 (-)
G174937 NA non-coding downstream 123829 67367370 ~ 67367600 (-)
G174934 NA non-coding downstream 125941 67365288 ~ 67365488 (-)
G174933 NA non-coding downstream 126173 67364920 ~ 67365256 (-)
G175064 NA non-coding upstream 36361 67560152 ~ 67560392 (-)
G175092 NA non-coding upstream 56489 67580280 ~ 67580484 (-)
G175115 NA non-coding upstream 74548 67598339 ~ 67598548 (-)
G175549 NA non-coding upstream 95036 67618827 ~ 67619342 (-)
G175552 NA non-coding upstream 98083 67621874 ~ 67622252 (-)
G174505 NA other downstream 798579 66692408 ~ 66692850 (-)
G173696 LOC106560906 other downstream 1100663 66375226 ~ 66390766 (-)
G173675 NA other downstream 1153043 66335412 ~ 66338386 (-)
LOC110494122 LOC106560915 other downstream 1193115 66277821 ~ 66299637 (-)
G173431 NA other downstream 1569200 65921850 ~ 65922229 (-)
G177487 NA other upstream 2067344 69591135 ~ 69591722 (-)
LOC110494902 LOC106560839 other upstream 2169818 69648833 ~ 69767366 (-)
LOC110501848 NA other upstream 3036731 70552263 ~ 70642587 (-)
fam169b fam169b other upstream 3245367 70769140 ~ 70773282 (-)
G179215 NA other upstream 3381581 70905372 ~ 70906254 (-)

Expression


Co-expression Network