si:ch211-212o1.2 (LOC106560866)


Basic Information

Item Value
gene id si:ch211-212o1.2
gene name LOC106560866
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 68553754 ~ 68592859 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021569763.2
CCATAATGAATACGCCCCATGGTTCACTTCGCTGTTGCACCAGGACATTAGGGATCCTCAATATTTTACAGCCTGATTCTCTGAAGTGCTGGACACTGAAAGTGTGAGACTATCAGTCACAGACGTAACCTACGGTCCAATGCCAGTTAAAACTGGGGGAATGGAAGGGAGGATCGCGGTGGCAGCGCCAGTActactgtcagagagagagattcaacaTCGGTCTATGGCAGAGGAGGATCCTAACGGGAATGAGCACGGTTCGGCTGCCCGCAGCACGGCGCCTCGTTGGGGACCGCAGCATGCAGGGGCCCGACAACTTGCAACACTGTACTCACCTGGTAAGCGACTGCAGGAGTGGATCAGTGTAgttctgtgcctctctctcttcatcatcaacctctccttccttctcctcaaCTTCTCCACTGTGCACATCTACAAAATAATCTTGGGCATCCTAATGGGGATAGTTATGGCGGACTTTGCATCTGGTATGGTGCACTGGGGAGCAGACACCTGGGGCTCTGTGGACATCCCTGTCCTTGGGAAGGCATTCATCCGCCCATTCCGGGAACACCACATTGACCCCACAGCCATCACTCGACATGACTTCATAGAGACCAATGGGGACAACTGCATGCTTACAATACTGCCCCTGGCACATATGGCCTACAAGTTCCTGACGTACCagccagatgccCTAGCAGAGACCTACCCCTGGCAGTGCTTTGTGTTTGCACTGGCTGTCTTCGTGACGTTGACCAaccagatccataagtggtctCACTCCTACTTTGGTCTTCCCCGCTGGGTGACGCTGCTACAGGACTGTCACCTGGTGTTACCACGGAAACACCACCGCATCCACCACGTGTCCCCTCACGAGACCTACTACTGcatcaccacagggTGGTTGAACTACCCTCTGGACAAGGTGGGCTTCTGGCGGAGGATGGAGAGGTTGATAGAGAGAGTGACAGGTCACACGCCTCGGAGTGATGACATGGAATGGACGAAGAAAATGGAGTGAAGAGCTCGGGGACTCTCTGGACCAGTAGGACAGTGGGGTGGGGGTTTTGGGCTGGTGGAAGACTGGGAAGGATTTTTCCTGCTTTTCACCCACTTCCTGTGTCTCTCTTCCTTACCCCTTACACTATAACACGCCTACAGTATATACTTCCTTGTCATGGCACAGCACCTCAGCAATGACACTAGTAATGCGGCCTTCTAGATACTTCCAAGTTCCATCCGTTATTTACTTTTGTTTGCTATTTGCTTTTTCAGTGTTGCAAGAGAAGCAGTCCACAGTCAGACTCTGTTTGCAATAGTAGGTCCAGTGGCAGATCTGGGGTTGACTTTGGAGATTTTTTGTCCTTTTTGTGACCCCATTTCTGTTAACTGCTCATCCTTCCATCCAATGGGCTTGTATCTCCTTACATATCTTAACCAATTagctgttattttattgtgtcagTGTAAGAGGTTTCTGGAGGATGGGCTCTCCAGGGGACAAACCATGTTGCCTTCTCAGGCATTGTCTTACATGACACAGAGAAAGAGGCTGTCATCTGGATCCAAGTTGAGCTTAATGTAAGAAGGCAATCATATTGCTCCTTACCTAAGTTGGGGGAAAAACAACCAAATGTCttacctacagtatgtattgGCCTTTTAAATGTATCGATTTTATTTGTTTGATTCATTGGAATTTGTTTTGAAATGATGTTTAGATCAGTCATGGTGGAATGAAACGTTGACTCAAACAAATGTCCCTCACCTCTAGTAACTACGTGACGATGTTCACAGATTCTTCCCTACTCCTTTGGTCAGGTAAGAGTAGAGAACCGCGGAGGATCAACCAGCAGGCTATTTATTTTGAAGACTGTAATGAAATAATTTCTACCTTCAAAAGGTAAATATCTGCACTTTACTGACTTACCCATAACTATGTTTATAAAAGACAGTCCTGTcagcacgcacgcatgcacacacagacacatacgcaCACGCAGGTTGACTTTTGTCATGactcttgtcctggaggcagaactgagcgatttccccttagataggccagctgcagtCAAAAcctgccgcacacacacacacagttcctgtCCATCATTGCATTGAATCGCTTGGACAGCTCGAAAGCAGCCATAATACACCCAGCTGAAATAAGTATGGTGTTTTCATCTTTGGGTTCATACCAGCAGCTTTTGGTTTTCTGTCTGGCTTTATAATGTGACATTTTTTATATTAACAGATCAGCCTTGAATTGAATTATTACTTCCCATCATGCAACTATTGCTCACAGCTAGTCTGCCTTAATGTTTTTTATCTGCTGTATGATTTAATAAAGCTCTATTAATTGAA

Function

NR:

description
transmembrane protein 189-like

GO: NA

KEGG:

id description
K20656 TMEM189; plasmanylethanolamine desaturase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021569763.2 True 2379 mRNA 0.47 7 68553754 68592859

Neighbor

gene id symbol gene type direction distance location
LOC110501822 znf423 coding upstream 2288 68403659 ~ 68551466 (+)
LOC110494554 LOC106560874 coding upstream 1016779 67524410 ~ 67536975 (+)
hsbp1b LOC106561110 coding upstream 1065549 67486128 ~ 67488205 (+)
LOC110494472 utp4 coding upstream 1313852 67232278 ~ 67239902 (+)
has3 has3 coding upstream 1323536 67216792 ~ 67230218 (+)
cbln1 cbln1 coding downstream 52616 68645475 ~ 68653500 (+)
LOC110494586 n4bp1 coding downstream 290310 68883169 ~ 68909472 (+)
siah1 siah1 coding downstream 327842 68920701 ~ 68947106 (+)
LOC118941448 LOC107672167 coding downstream 370925 68963784 ~ 68968557 (+)
st3gal2 st3gal2 coding downstream 492494 69069631 ~ 69093075 (+)
G176068 NA non-coding upstream 238501 68314974 ~ 68315253 (+)
G176049 NA non-coding upstream 250756 68302733 ~ 68302998 (+)
G176048 NA non-coding upstream 251180 68302343 ~ 68302574 (+)
G176042 NA non-coding upstream 254274 68299276 ~ 68299480 (+)
G176040 NA non-coding upstream 254871 68298362 ~ 68298883 (+)
G176332 NA non-coding downstream 340 68593199 ~ 68593453 (+)
G176333 NA non-coding downstream 1658 68594517 ~ 68594721 (+)
G176339 NA non-coding downstream 5729 68598588 ~ 68599116 (+)
G176351 NA non-coding downstream 13741 68606600 ~ 68606973 (+)
G176381 NA non-coding downstream 43401 68636260 ~ 68636466 (+)
LOC110494451 zfpm1 other upstream 1581299 66900017 ~ 66995521 (+)
G173938 LOC106573687 other upstream 1811541 66741820 ~ 66742213 (+)
LOC110494096 LOC106561115 other upstream 2287731 66262594 ~ 66266024 (+)
G176612 LOC100846954 other downstream 267979 68860838 ~ 68861368 (+)
G176725 lonp2 other downstream 363404 68956263 ~ 68957886 (+)
G177067 NA other downstream 863699 69456558 ~ 69457433 (+)
G177812 NA other downstream 1514427 70107286 ~ 70113440 (+)
igf1ra igf1r other downstream 2202551 70794530 ~ 70905277 (+)

Expression


Co-expression Network