lonp2 (lonp2)


Basic Information

Item Value
gene id lonp2
gene name lonp2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 68951337 ~ 68977698 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021569803.2
CGTTTGTCCCCTACTGCACGCCGTAGTTTGCAATGTTGTGACATTCGCCCTAGTCGTCACCCGATTTAGAAAGAAGTACTATACATTTTGTCCATATTGACCTGAAGATCGGTAGCTGGGAAAACATAAAATAATGTCATCCAACAGCGGTATCCAAATCCCAAGTCGACTGCCTCTGCTGTTGACCCATGAAGGGGTGCTTTTGCCAGGCTCGACGATGCGGATCAGTGTTGAAACGGCGAGGAACATGCATCTGGTGAAAAACAGACTGCTGAAGGGGACCTCGCTGAAGAGCACCATCATCGGCGTGATCCCTAACACCCGAGATCCTGAATACGATACTGAAGATCTCCCCACCTTGCATAGTATTGGCACGGCGGGGCTGGCGGTGCAGGTAGTGGGCAGTAACTGGCCCAAGCCCCACTACACACTGCTCATCACAGGGCTGTGTCGCTTCCGCGTGGCCCAACTGCTGAAGGAGGGGCCCTTCCCCTTGGCTGAGGTGGAGCAACTGGATAAGCTGGAGCAGTACACCAGCCCAGACGAGATGTCTGAGGCACCCGGGCCAGATGGAGAGCTGGGGGAGCTGTCCCAGAGGTTCTACCAGGCCGCTGTGCAGttGGTAGGCATGTTGGACATGTCTGTTCCTGTGGTGGCCAAGTTGAGAAGGCTCTTGGACAGCCTCCCCAGGGAGACCCTGCCTGATGTCCTGGCTTCTATGATTCATACCTCCAACAAAGAGAAGCTCCAGGTTCTGGATGCAGTGAGTCTGGAGGAACGTTTTAAGAAGACTCTTCCCCTGCTGACCAGACAGATTGAGGGTCTCAAACTGCTGCAGAAGACCAGAAAACCAAGACTAGACGATGACAAAAGGGTGCTGGCTGTACGTAAAGGCGGTGTGCTTCCTGGTCGTCAGTTCTCCTTGGATGAAGAGGGTGATGATGAGGATGGTGATGACACAGCTGTCCTGGAGAGGAAGGTTAAAGGAGCGAATATGCCAGAGCCTGCCCTGCGTGTCTGCCTCAAAGAGCTCAAAAGATTGAAGAAGATGCCCCAGTCCATGCCAGAGTACGCTCTCACCCGAAACTACCTGGATCTTATGGTGGAATTGCCCTGGAGCAAAAGTACCACAGACTGTCTTGATATCCGTGCTGCGCGGGTGCTGTTGGACAGTGACCACTATGCCATGGAGAAGCTGAAGAGGAGAGTGCTGGAGTACCTGGCTGTGAGGCAGCTGAAGAGCACCCTCAAGGGGCCCATCCTGTGCTTCGTGGGGCCGCCTGGGGTGGGAAAGACCAGTGTGGGGCGCTCCATCGCCCGTACCCTGGGCAGGGAGTTCCACCGTATTGCCCTGGGAGGGGTGTGTGACCAGTCTGACATCCGCGGGCACAGGAGGACCTACGTGGGCAGCATGCCTGGCCGCATCATCAACGGGCTGAAGACGGTGGGAGTCAACAACCCTGTCTTCCTGCTGGACGAGGTGGACAAGCTAGGCAAGAGTCTGCAGGGAGACCCTGCCTCTGCCCTGTTGGAGGTCCTGGACCCAGAGCAGAATCACAGCTTCACAGACCACTACCTCAACGTGGCCTTCGACCTCTCCCAGGTCCTGTTCATCGCTACAGCCAACTCCACGGCCACCATCCCTCCGGCCCTGCTGGACAGGATGGAGGTCCTCCAGGTGCAAGGGTACACtcaggaggagaaggtggagatAGCTCATCGTCACCTGATTCCCCATCAGCTAGAACAGCATGGACTCACCCCCCAACAGCTCCAGATACCTCAGGACACCACCCAGGACATCATTAGCAAgTACACTCGTGAGGCCGGTGTCCGGTCCCTGGAGAGGAAGATCGGTGCGATATGTCGAGCAGTGGCAGTGAAGGTCGCAGAGGGTCACAATGTTACCAAATCAGAGGCCGCGCCTGCTGAGAGCGTCCCCCAGGGAGCTGAGCACGGAGGTAGAAAAAACAGCAGGGGAAAGCCACTCTCTGTGGGGCAGGAgggaggactgactgactggcacaGCTACAGTATCAGGCCCTGCCCTCAAACATACTGCAGTGaggggaAGCGAGGGCGGAGGGCAGAGGAGCCTGACGGGGTGTCGGCAGACATGGCAGCGCCCCCAGATATGCCCATCGTCATCGACCACATCGCGTTGAAAGACATCCTGGGGCCGCACGTCTTTGAGATGGAGGTGTCGGAGCGTCTGACACTGCCGGGCGTGGCCGTCGGCCTGGCCTGGACCCCCCTGGGAGGGGAGATCATGTTTGTGGAGGCCAGCCGCATGGAGGGTGAGGGCCAGCTGACCCTGACTGGACAACTGGGTGACGTTATGAAGGAATCTGCCCACCTGGCCATGAGCTGGCTGCGCAGCAATGCCAAGACCTACCAGCTGACCAACCTGGTCGGTGGTTCAGATCCTCTTGAGGGGACAGACATCCATCTGCACTTCCCAGCAGGAGCAGTCACAAAGGACGGCCCATCGGCTGGAGTCACCATGGTAACGGTCCTGGCCTCGCTGTTCAGTGGGCGCCTGGTACGGTCCGATGTGGCCATGACTGGAGAGATCACTCTGAGAGGCCTGGTGCTGCCGGTGGGAGGGATCAAGGACAAGGTCCTGGCAGCTCACAGGGCCGGGGTGAAGCGTGTCATCATCCCAAAGCGCAATGAGAAGGACCTGGAGGAGATCCCAGCTAACGTCCGGAAGGAGCTGGACTTTGTAACAGCCAGCAATCTGGACGAGGTCCTGAACGCAGCCTTCGATGGGGGGTTCCCCGGAATGTCCAACCCTCTCACTCTACCACACATTGTCAGCAAACTGTGAGATGGGTCCCTGTAATATTACCACTCAGAGACGGTCTGTCACACTCTGACTAACATACAGGAACTCCCATTCATCTTCCTGGTGGATATGGAAAGCTCTTCCATATATTAATTTGTATGAGGCAGAAACACACTGACCACATTATCTTTGTGGTGGGTGCATAAACAGGCAGTTATCAAGGAGGGTGTGGTTGTTACTGATCTGTTAGTAAGGAGGCTTCTGTGATGCAAACATGTTCTTTATCTACTTCAACACTTTCTTTAAGTTCACACAAAGAGGACAGGTTGAAATTTAGTGCCCTCTCTTATAACACCTGTTGCGTTTCCTTCATGGTGTTGCGGATTTGGATCTGACATTCAACATTTATGACCTGACTGGTCTGATCCTGGTGGAGTTCAGACTGAGTTAGGACAATCAATCACTtagttctactgtctctgctGCATACTGGGTTGTTCTGGGAACTGGCTGAATAATCCACAGTGTGGGGCTTATGTGGATTGTAACAGTACTAGTCAGTGATAGTTGTTCCAGTTTCTCTGCTGTAAAAGCTCTGGCTacgaacatttaaaaaataacaagACCGGTGACCTTGACCATGCTGTTCATGTCCCTCAGATTTAACATGACTGAATGAATGATGTTTACAGAGGCTTCATAATTGGCATCAGCATCAGAGGTCTGCTCAATATCCAGATAATTCTGCTGGTATGGCTTTACACATGATTTTATGTGTAGATACAGGATGAGCGTGATTGCACAGTAGCTATACTATGTCATACTCCTAAGGGATACAGTCTCACTAAATAGCCCTGTAACAGTTGCATAATGAAAATAAAGAATTTCAATACAAA
>XM_021569811.2
CGTTTGTCCCCTACTGCACGCCGTAGTTTGCAATGTTGTGACATTCGCCCTAGTCGTCACCCGATTTAGAAAGAAGTACTATACATTTTGTCCATATTGACCTGAAGATCGGTAGCTGGGAAAACATAAAATAATGTCATCCAACAGCGGTATCCAAATCCCAAGTCGACTGCCTCTGCTGTTGACCCATGAAGGGGTGCTTTTGCCAGGCTCGACGATGCGGATCAGTGTTGAAACGGCGAGGAACATGCATCTGGTGAAAAACAGACTGCTGAAGGGGACCTCGCTGAAGAGCACCATCATCGGCGTGATCCCTAACACCCGAGATCCTGAATACGATACTGAAGATCTCCCCACCTTGCATAGTATTGGCACGGCGGGGCTGGCGGTGCAGGTAGTGGGCAGTAACTGGCCCAAGCCCCACTACACACTGCTCATCACAGGGCTGTGTCGCTTCCGCGTGGCCCAACTGCTGAAGGAGGGGCCCTTCCCCTTGGCTGAGGTGGAGCAACTGGATAAGCTGGAGCAGTACACCAGCCCAGACGAGATGTCTGAGGCACCCGGGCCAGATGGAGAGCTGGGGGAGCTGTCCCAGAGGTTCTACCAGGCCGCTGTGCAGttGGTAGGCATGTTGGACATGTCTGTTCCTGTGGTGGCCAAGTTGAGAAGGCTCTTGGACAGCCTCCCCAGGGAGACCCTGCCTGATGTCCTGGCTTCTATGATTCATACCTCCAACAAAGAGAAGCTCCAGGTTCTGGATGCAGTGAGTCTGGAGGAACGTTTTAAGAAGACTCTTCCCCTGCTGACCAGACAGATTGAGGGTCTCAAACTGCTGCAGAAGACCAGAAAACCAAGACTAGACGATGACAAAAGGGTGCTGGCTGTACGTAAAGGCGGTGTGCTTCCTGGTCGTCAGTTCTCCTTGGATGAAGAGGGTGATGATGAGGATGGTGATGACACAGCTGTCCTGGAGAGGAAGGTTAAAGGAGCGAATATGCCAGAGCCTGCCCTGCGTGTCTGCCTCAAAGAGCTCAAAAGATTGAAGAAGATGCCCCAGTCCATGCCAGAGTACGCTCTCACCCGAAACTACCTGGATCTTATGGTGGAATTGCCCTGGAGCAAAAGTACCACAGACTGTCTTGATATCCGTGCTGCGCGGGTGCTGTTGGACAGTGACCACTATGCCATGGAGAAGCTGAAGAGGAGAGTGCTGGAGTACCTGGCTGTGAGGCAGCTGAAGAGCACCCTCAAGGGGCCCATCCTGTGCTTCGTGGGGCCGCCTGGGGTGGGAAAGACCAGTGTGGGGCGCTCCATCGCCCGTACCCTGGGCAGGGAGTTCCACCGTATTGCCCTGGGAGGGGTGTGTGACCAGTCTGACATCCGCGGGCACAGGAGGACCTACGTGGGCAGCATGCCTGGCCGCATCATCAACGGGCTGAAGACGGTGGGAGTCAACAACCCTGTCTTCCTGCTGGACGAGGTGGACAAGCTAGGCAAGAGTCTGCAGGGAGACCCTGCCTCTGCCCTGTTGGAGGTCCTGGACCCAGAGCAGAATCACAGCTTCACAGACCACTACCTCAACGTGGCCTTCGACCTCTCCCAGGTCCTGTTCATCGCTACAGCCAACTCCACGGCCACCATCCCTCCGGCCCTGCTGGACAGGATGGAGGTCCTCCAGGTGCAAGGGTACACtcaggaggagaaggtggagatAGCTCATCGTCACCTGATTCCCCATCAGCTAGAACAGCATGGACTCACCCCCCAACAGCTCCAGATACCTCAGGACACCACCCAGGACATCATTAGCAAgTACACTCGTGAGGCCGGTGTCCGGTCCCTGGAGAGGAAGATCGGTGCGATATGTCGAGCAGTGGCAGTGAAGGTCGCAGAGGGTCACAATGTTACCAAATCAGAGGCCGCGCCTGCTGAGAGCGTCCCCCAGGGAGCTGAGCACGGAGaggggaAGCGAGGGCGGAGGGCAGAGGAGCCTGACGGGGTGTCGGCAGACATGGCAGCGCCCCCAGATATGCCCATCGTCATCGACCACATCGCGTTGAAAGACATCCTGGGGCCGCACGTCTTTGAGATGGAGGTGTCGGAGCGTCTGACACTGCCGGGCGTGGCCGTCGGCCTGGCCTGGACCCCCCTGGGAGGGGAGATCATGTTTGTGGAGGCCAGCCGCATGGAGGGTGAGGGCCAGCTGACCCTGACTGGACAACTGGGTGACGTTATGAAGGAATCTGCCCACCTGGCCATGAGCTGGCTGCGCAGCAATGCCAAGACCTACCAGCTGACCAACCTGGTCGGTGGTTCAGATCCTCTTGAGGGGACAGACATCCATCTGCACTTCCCAGCAGGAGCAGTCACAAAGGACGGCCCATCGGCTGGAGTCACCATGGTAACGGTCCTGGCCTCGCTGTTCAGTGGGCGCCTGGTACGGTCCGATGTGGCCATGACTGGAGAGATCACTCTGAGAGGCCTGGTGCTGCCGGTGGGAGGGATCAAGGACAAGGTCCTGGCAGCTCACAGGGCCGGGGTGAAGCGTGTCATCATCCCAAAGCGCAATGAGAAGGACCTGGAGGAGATCCCAGCTAACGTCCGGAAGGAGCTGGACTTTGTAACAGCCAGCAATCTGGACGAGGTCCTGAACGCAGCCTTCGATGGGGGGTTCCCCGGAATGTCCAACCCTCTCACTCTACCACACATTGTCAGCAAACTGTGAGATGGGTCCCTGTAATATTACCACTCAGAGACGGTCTGTCACACTCTGACTAACATACAGGAACTCCCATTCATCTTCCTGGTGGATATGGAAAGCTCTTCCATATATTAATTTGTATGAGGCAGAAACACACTGACCACATTATCTTTGTGGTGGGTGCATAAACAGGCAGTTATCAAGGAGGGTGTGGTTGTTACTGATCTGTTAGTAAGGAGGCTTCTGTGATGCAAACATGTTCTTTATCTACTTCAACACTTTCTTTAAGTTCACACAAAGAGGACAGGTTGAAATTTAGTGCCCTCTCTTATAACACCTGTTGCGTTTCCTTCATGGTGTTGCGGATTTGGATCTGACATTCAACATTTATGACCTGACTGGTCTGATCCTGGTGGAGTTCAGACTGAGTTAGGACAATCAATCACTtagttctactgtctctgctGCATACTGGGTTGTTCTGGGAACTGGCTGAATAATCCACAGTGTGGGGCTTATGTGGATTGTAACAGTACTAGTCAGTGATAGTTGTTCCAGTTTCTCTGCTGTAAAAGCTCTGGCTacgaacatttaaaaaataacaagACCGGTGACCTTGACCATGCTGTTCATGTCCCTCAGATTTAACATGACTGAATGAATGATGTTTACAGAGGCTTCATAATTGGCATCAGCATCAGAGGTCTGCTCAATATCCAGATAATTCTGCTGGTATGGCTTTACACATGATTTTATGTGTAGATACAGGATGAGCGTGATTGCACAGTAGCTATACTATGTCATACTCCTAAGGGATACAGTCTCACTAAATAGCCCTGTAACAGTTGCATAATGAAAATAAAGAATTTCAATACAAA

Function

symbol description
lonp2 Predicted to enable ATP binding activity and peptidase activity. Predicted to be involved in protein processing and protein targeting to peroxisome. Predicted to act upstream of or within protein quality control for misfolded or incompletely synthesized proteins. Predicted to be located in peroxisome. Predicted to be active in peroxisomal matrix. Orthologous to human LONP2 (lon peptidase 2, peroxisomal).

NR:

description
lon protease homolog 2, peroxisomal isoform X2

GO:

id name namespace
GO:0016485 protein processing biological_process
GO:0016558 protein import into peroxisome matrix biological_process
GO:0006200 obsolete ATP catabolic process biological_process
GO:0006515 protein quality control for misfolded or incompletely synthesized proteins biological_process
GO:0005782 peroxisomal matrix cellular_component
GO:0009295 nucleoid cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0004176 ATP-dependent peptidase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0004252 serine-type endopeptidase activity molecular_function

KEGG:

id description
K01338 lon; ATP-dependent Lon protease

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021569803.2 False 3684 mRNA 0.54 15 68951337 68977698
XM_021569811.2 True 3579 mRNA 0.54 15 68951337 68977698

Neighbor

gene id symbol gene type direction distance location
cdh13 LOC106560870 coding downstream 758444 67666186 ~ 68192893 (-)
zgc:173742 LOC106560872 coding downstream 1427546 67491429 ~ 67523791 (-)
si:dkey-246g23.2 LOC106560875 coding downstream 1465311 67403141 ~ 67486026 (-)
LOC110501813 LOC106560876 coding downstream 1596615 67349284 ~ 67354722 (-)
LOC110494509 LOC106560876 coding downstream 1647198 67302200 ~ 67304139 (-)
il34 il-34 coding upstream 2712 68980410 ~ 69003899 (-)
sf3b3 sf3b3 coding upstream 32152 69009850 ~ 69059398 (-)
aars1 aars coding upstream 119044 69096742 ~ 69111871 (-)
LOC110494649 LOC106560856 coding upstream 136082 69112267 ~ 69128035 (-)
LOC110494669 arl2bp coding upstream 160918 69138616 ~ 69140982 (-)
G176712 NA non-coding downstream 36054 68915008 ~ 68915283 (-)
G176688 NA non-coding downstream 57647 68885939 ~ 68893690 (-)
G176668 NA non-coding downstream 89886 68861177 ~ 68861451 (-)
G176664 NA non-coding downstream 94598 68856535 ~ 68856739 (-)
G176490 NA non-coding downstream 220453 68729840 ~ 68730884 (-)
G177154 NA non-coding upstream 1281 68978979 ~ 68979457 (-)
G177192 NA non-coding upstream 71322 69049020 ~ 69106218 (-)
G177244 NA non-coding upstream 139169 69116867 ~ 69117163 (-)
G177272 NA non-coding upstream 217843 69195541 ~ 69195986 (-)
G174505 NA other downstream 2258487 66692408 ~ 66692850 (-)
G173696 LOC106560906 other downstream 2560571 66375226 ~ 66390766 (-)
G173675 NA other downstream 2612951 66335412 ~ 66338386 (-)
LOC110494122 LOC106560915 other downstream 2653023 66277821 ~ 66299637 (-)
G173431 NA other downstream 3029108 65921850 ~ 65922229 (-)
G177487 NA other upstream 613437 69591135 ~ 69591722 (-)
LOC110494902 LOC106560839 other upstream 715911 69648833 ~ 69767366 (-)
LOC110501848 NA other upstream 1582824 70552263 ~ 70642587 (-)
fam169b fam169b other upstream 1791460 70769140 ~ 70773282 (-)
G179215 NA other upstream 1927674 70905372 ~ 70906254 (-)

Expression


Co-expression Network