Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC118941448 |
| gene name | LOC107672167 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048566.1 |
| NCBI id | CM023220.2 |
| chromosome length | 103806877 |
| location | 68963784 ~ 68968557 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| lon protease homolog 2, peroxisomal-like, partial |
| id | name | namespace |
|---|---|---|
| GO:0016485 | protein processing | biological_process |
| GO:0016558 | protein import into peroxisome matrix | biological_process |
| GO:0006200 | obsolete ATP catabolic process | biological_process |
| GO:0006515 | protein quality control for misfolded or incompletely synthesized proteins | biological_process |
| GO:0005782 | peroxisomal matrix | cellular_component |
| GO:0009295 | nucleoid | cellular_component |
| GO:0043565 | sequence-specific DNA binding | molecular_function |
| GO:0004176 | ATP-dependent peptidase activity | molecular_function |
| GO:0005524 | ATP binding | molecular_function |
| GO:0004252 | serine-type endopeptidase activity | molecular_function |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XR_005037655.1 | True | 2266 | mRNA | 0.48 | 2 | 68963784 | 68968557 |
68,959,000
68,960,000
68,961,000
68,962,000
68,963,000
68,964,000
68,965,000
68,966,000
68,967,000
68,968,000
68,969,000
68,970,000
68,971,000
68,972,000
NC_048566.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| siah1 | siah1 | coding | upstream | 16678 | 68920701 ~ 68947106 (+) |
| LOC110494586 | n4bp1 | coding | upstream | 54312 | 68883169 ~ 68909472 (+) |
| cbln1 | cbln1 | coding | upstream | 310284 | 68645475 ~ 68653500 (+) |
| si:ch211-212o1.2 | LOC106560866 | coding | upstream | 370925 | 68553754 ~ 68592859 (+) |
| LOC110501822 | znf423 | coding | upstream | 412318 | 68403659 ~ 68551466 (+) |
| st3gal2 | st3gal2 | coding | downstream | 116796 | 69069631 ~ 69093075 (+) |
| exosc6 | exosc6 | coding | downstream | 143506 | 69112063 ~ 69113805 (+) |
| trnal-cag | NA | coding | downstream | 166226 | 69134783 ~ 69134865 (+) |
| psme3ip1 | LOC106560853 | coding | downstream | 198238 | 69166795 ~ 69176697 (+) |
| LOC110494820 | NA | coding | downstream | 347011 | 69315568 ~ 69325990 (+) |
| G176724 | lonp2 | non-coding | upstream | 11374 | 68951347 ~ 68952410 (+) |
| G176583 | NA | non-coding | upstream | 152556 | 68810810 ~ 68811228 (+) |
| G176494 | NA | non-coding | upstream | 162505 | 68733570 ~ 68801279 (+) |
| G176534 | NA | non-coding | upstream | 167045 | 68796267 ~ 68796739 (+) |
| G176481 | NA | non-coding | upstream | 241488 | 68722005 ~ 68722296 (+) |
| G176751 | NA | non-coding | downstream | 10483 | 68979040 ~ 68979298 (+) |
| G176752 | NA | non-coding | downstream | 12775 | 68981332 ~ 69003884 (+) |
| G176801 | NA | non-coding | downstream | 39841 | 69008398 ~ 69008682 (+) |
| G176779 | NA | non-coding | downstream | 146913 | 69115470 ~ 69116702 (+) |
| G176725 | lonp2 | other | upstream | 5898 | 68956263 ~ 68957886 (+) |
| G176612 | LOC100846954 | other | upstream | 102416 | 68860838 ~ 68861368 (+) |
| hsbp1b | LOC106561110 | other | upstream | 1475583 | 67486128 ~ 67488205 (+) |
| LOC110494472 | utp4 | other | upstream | 1723888 | 67232278 ~ 67239902 (+) |
| LOC110494451 | zfpm1 | other | upstream | 1991329 | 66900017 ~ 66995521 (+) |
| G177067 | NA | other | downstream | 488001 | 69456558 ~ 69457433 (+) |
| G177812 | NA | other | downstream | 1138729 | 70107286 ~ 70113440 (+) |
| igf1ra | igf1r | other | downstream | 1826853 | 70794530 ~ 70905277 (+) |
| LOC110495604 | LOC106573778 | other | downstream | 3091160 | 72059717 ~ 72065199 (+) |
| LOC110533853 | LOC106561194 | other | downstream | 3284881 | 72250884 ~ 72253809 (+) |
