sf3b3 (sf3b3)


Basic Information

Item Value
gene id sf3b3
gene name sf3b3
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 69009850 ~ 69059398 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021569841.2
CACATTGTGGACCAATTTTTGATGACGTCGCAGATCGTGAAGAGGACCCACGATCGACAGGAAAGCGTTTGTCTGCAGAAGTATCAACAAGTTGACGGTGTGACTGAAATTCATAATCTAGTTGATATCAGTTTCATCCTAACTGATACATCGAACCTGGTGTTGCTGTGGCCTCTTTGACCTGCACCTGAAGGTAGAGAAACAGACACTATGTTTCTGTATAACCTGACCCTGCAGCGTGCCACTGGCATCACCCACGCCATCCATGGAAACTTCTCAGGAACCAAGATGCAGGAGATAGTTGTTTCCAGGGGGAAGATAATTGAGCTGCTGCGTCCAGATGCCAACACAGGGAAGGTTCACACCCTGCTTACCATGGAGGTGTTTGGCATCATTCGCTCCCTCATGGCCTTCAGGCTGACAGGAGGaactaaagACTATATTGTGGTGGGCAGTGACTCAGGCCGCATCGTGATCCTTGAGTACCACCCCTCCAAGAACATGTTTGAGAAGATCCACCAGGAGACCTTTGGCAAGAGTGGATGTCGTCGCATCGTCCCTGGACAGTTCCTCGCCGTCGACCCTAAGGGCAGAGCAGTCATGATAGGTGCCATTGAGAAGCAGAAGCTGGTGTACATCCTGAACAGAGATGCAGCAGCGCGTCtcaccatctcctctcccctggaGGCTCACAAGGCCAACACGCTGGTCTACCATGTGGTAGGAGTTGATGTGGGCTTTGAAAACCCCATGTTTGCCTGTCTGGAGATGGACTATGAGgAAGCTGACAATGACCCCACTGGCGAGGCTGCAGCCAACACCCAGCAAACCCTGACCTTCTATGAGCTGGACCTGGGTCTGAACCACGTTGTGCGCAAGTACAGCGAGGCCCTAGAGGAGCACGGCAACTTCCTCATTACAGtTCCTGGAGGCTCTGATGGGCCCAGTGGAGTACTCATCTGTTCAGAGAATTACATCACCTACAAAAACTTTGGAGACCAGCCTGACATTCGCTGTCCCATCCCACGCAGGAGGAATGACCTGGATGACCCTGAGCGAGGCATGATCTTCGTCTGCTCAGCCACCCacaagaccaagtccatgttctTCTTCCTGGCCCAGACGGAGCAGGGTGACATTTTCAAGGTCACCCTGGAGACCGATGAGGAGATGGTTACAGAGATCAGGATGAAGTACTTCGACACCATACCTGTAGCCACATCCATGTGTGTGCTGAAGACCGGCTTCTTATTTGTGTCCTCAGAGTTTGGTAACCAttACCTGTACCAGATAGCCCATCTGGGAGATGACGATGAAGAGCCAGAGTTCTCCTCTGCCATGCCCCTGGAGGAGGGAGATACCTTCTTCTTCCAGCCACGCCCCCTCAAGAACCTGGTGCTGGTGGACGAGCAGGAGAACCTCTCCCCCATCATGTcctgccagATTGCTGACTTGGCTAATGAGGACACTCCTCAGCTGTATGTGGCCTGTGGCAGGGGACCCAAATCCACCCTCCGTGTCCTCAGACATGGACTGGAGGTATCAGAGATGGCTGTGTCTGAGCTGCCCGGTAACCCCAATGCTGTGTGGACTGTGCGCCGACACATTGAAGatGAGTTTGACGCGTACATCATCGTTTCCTTCGTCAACGCCACCCTGGTTCTGTCTATCGGTGAGACCGTAGAGGAAGTGACAGACTCTGGCTTCCTGGGGACCACCCccaccctctcctgctctctgctTGGGGAGGATGCTCTGGTGCAGGTGTATCCTGATGGGATCCGTCACATCCGTGCTGATAAGCGTGTGAATGAGTGGAAGACTCCAGGGAAGAAGACCATTGTGCGCTGTGCAGTCAACCAGAGGCAGGTGGTTATCGCTCTGACCGGAGGAGAGCTAGTCTACTTTGAGATGGACCCTTCTGGCCAGCTGAATGAgtacacagagaggaaggagatgtCAGCTGACGTGGTGTGTATGAGCTTGGCCAATGTCCCCCCTGGCGAGCAGCGCTCCCGTTTCCTGGCGGTGGGGCTGGTGGACAACACCGTCCGCATCATCTCACTGGACCCCTCGGACTGTCTCCAGCCCCTCAGTATGCAGGCCCTGCCTGCCCAGCCTGAGTCTCTGTGTATAGTGGAgatgggaggagtggagaaggaagATGAGCTAGGAGTGAAGGGCACTGTCGGCTTTCTCTACCTCAACATCGGACTGCAGAATGGTGTGTTGCTCAGGACCGTGCTGGACCCAGTGACTGGAGACCTGTCTGATACTCGTACTCGGTACTTGGGGTCGCGACCTGTGAAGCTCTTCCGCGTCAGGATGCAGGGACAGGAAGCTGTGTTGGCCATGTCGAGTCGCTCCTGGCTGAGTTATTCCTACCAGTCCCGATTCCATCTGACGCCCCTGTCCTATGAGACGCTGGAATATGCCTCTGGCTTCGCCTCTGAACAGTGTCCAGAGGGCATTGTGGCAATCTCTACCAACACCCtgagGATTCTGGCCTTGGAGAAGCTGGGTGCCGTGTTCAACCAGGTGGCCTTCCCCCTGCAGTACACACCTCGCAAGTTTGTCATTCACCCAGAGACAAACAACCTGATACTCATAGAGACTGATCACAATGCCTACACAGAGGCCACCAAGGCCCAGCGAAAGCAGCAGATGGCAGAGGAGATGGTTGAGGCAGCTGGTGAGGATGAGAGGGAGCTTGCAGCAGAGATGGCTGCTGCCTTCCTCAATGAGAACCTGCCAGAGGCCATCTTTGGGGCGCCCAAGGCCGGGTCTGGCCAGTGGGCCTCTCTGGTGCGTCTTGTCAACCCCATCCAGGGAACCACTCTGGACCTTGTCCAACTGGAGCAGAATGAGGCTGCCTTCAGTGTGACTGTTTGTCGGTTTGCCAGCGGAGGTGATGACTGGTATGTGCTGGTGGGGGTGGCCCGGGACATGATCCTTAACCCCCGCTCTGTGGGAGGCGGTTTTATCTACACCTATCggctgggagggggaggggacaaACTGGAGTTTATGCACAAGACTCCAGTGGAGGACGTTCCTCTGGCAATCGCTCCGTTCCAGGGCCGTGTGCTGGTGGGCGTTGGCAAACTGCTGCGCATCTATGACCTGGGCAAGAAGAAGCTGCTCCGGAAGTGTGAGAACAAGCATGTGCCCAACCTGGTGACTGGTATCCACACCATCGGTCAGCGGGTCATAGTGACTGATGTACAGGAGAGTCTGTTCTGGGTGCGCTACAAGCGCAACGAGAATCAGCTCATCATCTTCGCTGACGACACCCACCCTCGCTGGGTCACCACTGCCTGCCTGCTGGACTACGACACCATGGCTTCAGCCGACAAGTTTGGCAACATCAGCATTGTGCGCCTTCCCCCTAACACCAGTGACGATGTGGATGAGGACCCAACTGGGAACAAAGCATTGTGGGATAGAGGTCTGCTGAACGGAGCTTCTCAGAAGGCTGAAGTGATCATGAACTACCACATTGGGGAGACGGTGCTGTCACTGCAGAAGACCACACTGATCCCTGGAGGCTCGGAATCTCTGGTCTACACAACTCTTTCTGGAGGCATCGGCATCCTGGTGCCCTTCACTTCCCACGAgGATCATGACTTCTTCCAGCACTTAGAGATGCATATGCGCTCAGAGTTCCCCCCTCTGTGTGGCAGGGACCACCTCAGCTTCCGCTCCTACTACTTCCCTGTAAAGAATGTGATAGATGGAGATCTGTGTGAGCAGTTCAACTCCATGGACCCCCACAAGCAGAAGAGTGTTGCTGAGGAGCTGGACCGTACTCCCCCTGAGGTCTCAAAGAAACTGGAGGACATCCGCACACGCTATGCCTTCTAGAACCCtcctgtactgtacatacacacatacacaaatacactCACTATGTTAACATGAGGAGTTGAGAGCTTTCTTGGTTTCCTGCCGAGATGTCGACAAAACATAGTTTCCTTGCCTCTTCACAATCTATGAACACTCTGAATCGATCTTTAGGTCCTGTTTTCTTTATTAGGCCTATAAAATGTCACGAATTGTGGTGAATGGTGGTAACAGTCTTTGAATATTTACCCCAAGGTTTTCACTCACAGGATGTAATTTAAACCTAGACGGATTCTGTGGAATGTATCATGTGTGTAGCATCAGTGCTTTATTCTCATACAGGAGCAGTCGCTGGGTTTTCAACCGTGAGAAGCATGGCCTAGTAAACCCTTTGATAGAATTAGCTCAACTGTTTTTGCATTGTGTGATTTGTTTAAACGATCCATTTTAAGTATTTTTCTGTAACTGTGTGCTACAAATGGATTTTGTTTTCTGTATCGATTTGAATCCTAAAAGTCAGTGTCCAGCAGCTGTTTATTTAGTGCTTAAAAAGTATATTCCTTTGGACAAATTGTCCATATCTATTACACAGGATGACAGGATTGTGTAAAAATAGCGAAGGAATACTCGCACTGTAGGAGAGTGATACCATTCCGTATTAGTCATGAGAAAACAGGCAGGCAAATTTGTAAATAAagtgtttttttaaatcttttGTAA
>XM_021569849.2
CCAGCACCCTGTGTGGTCAGAAACGTGCTTTCCCCATCCTGATGAGAACTTCCACAGTTTTCCCTCCTGCTGAACTTTTCCTCTTGTGGACTGAATTGATGTATGTCTGATGTTTTAATTGTGCGTACATCTACATAACCTGGTGTTGCTGTGGCCTCTTTGACCTGCACCTGAAGGTAGAGAAACAGACACTATGTTTCTGTATAACCTGACCCTGCAGCGTGCCACTGGCATCACCCACGCCATCCATGGAAACTTCTCAGGAACCAAGATGCAGGAGATAGTTGTTTCCAGGGGGAAGATAATTGAGCTGCTGCGTCCAGATGCCAACACAGGGAAGGTTCACACCCTGCTTACCATGGAGGTGTTTGGCATCATTCGCTCCCTCATGGCCTTCAGGCTGACAGGAGGaactaaagACTATATTGTGGTGGGCAGTGACTCAGGCCGCATCGTGATCCTTGAGTACCACCCCTCCAAGAACATGTTTGAGAAGATCCACCAGGAGACCTTTGGCAAGAGTGGATGTCGTCGCATCGTCCCTGGACAGTTCCTCGCCGTCGACCCTAAGGGCAGAGCAGTCATGATAGGTGCCATTGAGAAGCAGAAGCTGGTGTACATCCTGAACAGAGATGCAGCAGCGCGTCtcaccatctcctctcccctggaGGCTCACAAGGCCAACACGCTGGTCTACCATGTGGTAGGAGTTGATGTGGGCTTTGAAAACCCCATGTTTGCCTGTCTGGAGATGGACTATGAGgAAGCTGACAATGACCCCACTGGCGAGGCTGCAGCCAACACCCAGCAAACCCTGACCTTCTATGAGCTGGACCTGGGTCTGAACCACGTTGTGCGCAAGTACAGCGAGGCCCTAGAGGAGCACGGCAACTTCCTCATTACAGtTCCTGGAGGCTCTGATGGGCCCAGTGGAGTACTCATCTGTTCAGAGAATTACATCACCTACAAAAACTTTGGAGACCAGCCTGACATTCGCTGTCCCATCCCACGCAGGAGGAATGACCTGGATGACCCTGAGCGAGGCATGATCTTCGTCTGCTCAGCCACCCacaagaccaagtccatgttctTCTTCCTGGCCCAGACGGAGCAGGGTGACATTTTCAAGGTCACCCTGGAGACCGATGAGGAGATGGTTACAGAGATCAGGATGAAGTACTTCGACACCATACCTGTAGCCACATCCATGTGTGTGCTGAAGACCGGCTTCTTATTTGTGTCCTCAGAGTTTGGTAACCAttACCTGTACCAGATAGCCCATCTGGGAGATGACGATGAAGAGCCAGAGTTCTCCTCTGCCATGCCCCTGGAGGAGGGAGATACCTTCTTCTTCCAGCCACGCCCCCTCAAGAACCTGGTGCTGGTGGACGAGCAGGAGAACCTCTCCCCCATCATGTcctgccagATTGCTGACTTGGCTAATGAGGACACTCCTCAGCTGTATGTGGCCTGTGGCAGGGGACCCAAATCCACCCTCCGTGTCCTCAGACATGGACTGGAGGTATCAGAGATGGCTGTGTCTGAGCTGCCCGGTAACCCCAATGCTGTGTGGACTGTGCGCCGACACATTGAAGatGAGTTTGACGCGTACATCATCGTTTCCTTCGTCAACGCCACCCTGGTTCTGTCTATCGGTGAGACCGTAGAGGAAGTGACAGACTCTGGCTTCCTGGGGACCACCCccaccctctcctgctctctgctTGGGGAGGATGCTCTGGTGCAGGTGTATCCTGATGGGATCCGTCACATCCGTGCTGATAAGCGTGTGAATGAGTGGAAGACTCCAGGGAAGAAGACCATTGTGCGCTGTGCAGTCAACCAGAGGCAGGTGGTTATCGCTCTGACCGGAGGAGAGCTAGTCTACTTTGAGATGGACCCTTCTGGCCAGCTGAATGAgtacacagagaggaaggagatgtCAGCTGACGTGGTGTGTATGAGCTTGGCCAATGTCCCCCCTGGCGAGCAGCGCTCCCGTTTCCTGGCGGTGGGGCTGGTGGACAACACCGTCCGCATCATCTCACTGGACCCCTCGGACTGTCTCCAGCCCCTCAGTATGCAGGCCCTGCCTGCCCAGCCTGAGTCTCTGTGTATAGTGGAgatgggaggagtggagaaggaagATGAGCTAGGAGTGAAGGGCACTGTCGGCTTTCTCTACCTCAACATCGGACTGCAGAATGGTGTGTTGCTCAGGACCGTGCTGGACCCAGTGACTGGAGACCTGTCTGATACTCGTACTCGGTACTTGGGGTCGCGACCTGTGAAGCTCTTCCGCGTCAGGATGCAGGGACAGGAAGCTGTGTTGGCCATGTCGAGTCGCTCCTGGCTGAGTTATTCCTACCAGTCCCGATTCCATCTGACGCCCCTGTCCTATGAGACGCTGGAATATGCCTCTGGCTTCGCCTCTGAACAGTGTCCAGAGGGCATTGTGGCAATCTCTACCAACACCCtgagGATTCTGGCCTTGGAGAAGCTGGGTGCCGTGTTCAACCAGGTGGCCTTCCCCCTGCAGTACACACCTCGCAAGTTTGTCATTCACCCAGAGACAAACAACCTGATACTCATAGAGACTGATCACAATGCCTACACAGAGGCCACCAAGGCCCAGCGAAAGCAGCAGATGGCAGAGGAGATGGTTGAGGCAGCTGGTGAGGATGAGAGGGAGCTTGCAGCAGAGATGGCTGCTGCCTTCCTCAATGAGAACCTGCCAGAGGCCATCTTTGGGGCGCCCAAGGCCGGGTCTGGCCAGTGGGCCTCTCTGGTGCGTCTTGTCAACCCCATCCAGGGAACCACTCTGGACCTTGTCCAACTGGAGCAGAATGAGGCTGCCTTCAGTGTGACTGTTTGTCGGTTTGCCAGCGGAGGTGATGACTGGTATGTGCTGGTGGGGGTGGCCCGGGACATGATCCTTAACCCCCGCTCTGTGGGAGGCGGTTTTATCTACACCTATCggctgggagggggaggggacaaACTGGAGTTTATGCACAAGACTCCAGTGGAGGACGTTCCTCTGGCAATCGCTCCGTTCCAGGGCCGTGTGCTGGTGGGCGTTGGCAAACTGCTGCGCATCTATGACCTGGGCAAGAAGAAGCTGCTCCGGAAGTGTGAGAACAAGCATGTGCCCAACCTGGTGACTGGTATCCACACCATCGGTCAGCGGGTCATAGTGACTGATGTACAGGAGAGTCTGTTCTGGGTGCGCTACAAGCGCAACGAGAATCAGCTCATCATCTTCGCTGACGACACCCACCCTCGCTGGGTCACCACTGCCTGCCTGCTGGACTACGACACCATGGCTTCAGCCGACAAGTTTGGCAACATCAGCATTGTGCGCCTTCCCCCTAACACCAGTGACGATGTGGATGAGGACCCAACTGGGAACAAAGCATTGTGGGATAGAGGTCTGCTGAACGGAGCTTCTCAGAAGGCTGAAGTGATCATGAACTACCACATTGGGGAGACGGTGCTGTCACTGCAGAAGACCACACTGATCCCTGGAGGCTCGGAATCTCTGGTCTACACAACTCTTTCTGGAGGCATCGGCATCCTGGTGCCCTTCACTTCCCACGAgGATCATGACTTCTTCCAGCACTTAGAGATGCATATGCGCTCAGAGTTCCCCCCTCTGTGTGGCAGGGACCACCTCAGCTTCCGCTCCTACTACTTCCCTGTAAAGAATGTGATAGATGGAGATCTGTGTGAGCAGTTCAACTCCATGGACCCCCACAAGCAGAAGAGTGTTGCTGAGGAGCTGGACCGTACTCCCCCTGAGGTCTCAAAGAAACTGGAGGACATCCGCACACGCTATGCCTTCTAGAACCCtcctgtactgtacatacacacatacacaaatacactCACTATGTTAACATGAGGAGTTGAGAGCTTTCTTGGTTTCCTGCCGAGATGTCGACAAAACATAGTTTCCTTGCCTCTTCACAATCTATGAACACTCTGAATCGATCTTTAGGTCCTGTTTTCTTTATTAGGCCTATAAAATGTCACGAATTGTGGTGAATGGTGGTAACAGTCTTTGAATATTTACCCCAAGGTTTTCACTCACAGGATGTAATTTAAACCTAGACGGATTCTGTGGAATGTATCATGTGTGTAGCATCAGTGCTTTATTCTCATACAGGAGCAGTCGCTGGGTTTTCAACCGTGAGAAGCATGGCCTAGTAAACCCTTTGATAGAATTAGCTCAACTGTTTTTGCATTGTGTGATTTGTTTAAACGATCCATTTTAAGTATTTTTCTGTAACTGTGTGCTACAAATGGATTTTGTTTTCTGTATCGATTTGAATCCTAAAAGTCAGTGTCCAGCAGCTGTTTATTTAGTGCTTAAAAAGTATATTCCTTTGGACAAATTGTCCATATCTATTACACAGGATGACAGGATTGTGTAAAAATAGCGAAGGAATACTCGCACTGTAGGAGAGTGATACCATTCCGTATTAGTCATGAGAAAACAGGCAGGCAAATTTGTAAATAAagtgtttttttaaatcttttGTAA

Function

symbol description
sf3b3 Predicted to enable U2 snRNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be part of U2 snRNP and U2-type precatalytic spliceosome. Predicted to be active in nucleus. Orthologous to human SF3B3 (splicing factor 3b subunit 3).

NR:

description
PREDICTED: splicing factor 3B subunit 3

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0008380 RNA splicing biological_process
GO:0005681 spliceosomal complex cellular_component
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K12830 SF3B3, SAP130, RSE1; splicing factor 3B subunit 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021569841.2 False 4563 mRNA 0.52 27 69009850 69051084
XM_021569849.2 True 4546 mRNA 0.52 27 69009850 69059398
Loading

Neighbor

gene id symbol gene type direction distance location
il34 il-34 coding downstream 5951 68980410 ~ 69003899 (-)
lonp2 lonp2 coding downstream 32152 68951337 ~ 68977698 (-)
cdh13 LOC106560870 coding downstream 816957 67666186 ~ 68192893 (-)
zgc:173742 LOC106560872 coding downstream 1486059 67491429 ~ 67523791 (-)
si:dkey-246g23.2 LOC106560875 coding downstream 1523824 67403141 ~ 67486026 (-)
aars1 aars coding upstream 37344 69096742 ~ 69111871 (-)
LOC110494649 LOC106560856 coding upstream 54382 69112267 ~ 69128035 (-)
LOC110494669 arl2bp coding upstream 79218 69138616 ~ 69140982 (-)
rspry1 LOC106560854 coding upstream 81750 69141148 ~ 69166663 (-)
cpne2 LOC106560852 coding upstream 119635 69179033 ~ 69205373 (-)
G177154 NA non-coding downstream 30393 68978979 ~ 68979457 (-)
G176712 NA non-coding downstream 94567 68915008 ~ 68915283 (-)
G176688 NA non-coding downstream 116160 68885939 ~ 68893690 (-)
G176668 NA non-coding downstream 148399 68861177 ~ 68861451 (-)
G176664 NA non-coding downstream 153111 68856535 ~ 68856739 (-)
G177244 NA non-coding upstream 57469 69116867 ~ 69117163 (-)
G177272 NA non-coding upstream 136143 69195541 ~ 69195986 (-)
G177207 NA non-coding upstream 251113 69310511 ~ 69311709 (-)
G177315 NA non-coding upstream 260163 69319561 ~ 69319944 (-)
G174505 NA other downstream 2317000 66692408 ~ 66692850 (-)
G173696 LOC106560906 other downstream 2619084 66375226 ~ 66390766 (-)
G173675 NA other downstream 2671464 66335412 ~ 66338386 (-)
LOC110494122 LOC106560915 other downstream 2711536 66277821 ~ 66299637 (-)
G173431 NA other downstream 3087621 65921850 ~ 65922229 (-)
G177487 NA other upstream 531737 69591135 ~ 69591722 (-)
LOC110494902 LOC106560839 other upstream 634211 69648833 ~ 69767366 (-)
LOC110501848 NA other upstream 1501124 70552263 ~ 70642587 (-)
fam169b fam169b other upstream 1709760 70769140 ~ 70773282 (-)
G179215 NA other upstream 1845974 70905372 ~ 70906254 (-)

Expression

sf3b3(sf3b3) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 80.
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sf3b3(sf3b3) Expression in each Bioproject

Bar chart with 21 bars.
sf3b3(sf3b3) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 1000.
End of interactive chart.

Co-expression Network