LOC110494649 (LOC106560856)


Basic Information

Item Value
gene id LOC110494649
gene name LOC106560856
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 69112267 ~ 69128035 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021569909.2
AAATACGGGGTTCTGGTGGGGACAGTGGTAGAAAAGTGAGGCATACACCTTCAGGGCTGTTTGAAAAGGCACAAGAGGAGTCAAACTTATCATAAAAGGAGGTAACACGGCAGAGAAGAAAAGGAGGAGATATTCACAACAAAGACTGGAAAATGGCTGACCAAAACGGTGTATTCATGGGAGTGGACCTGCGTTGCCAGGTGAACAACCATGCCCATCGTACAGGGGAAATGGACCTGGAAAGGCTGCTGGTTCGTAGGGGGCAGCCCTTCTCCCTCGCTCTGCAGTGCTCCACACCCCTGCCCCCCAAACACAAACTAGCCATGATCCTGCATCTGGGTAAGGAGGGTGAGGTGGTGGTGAAGGTTTTGGATGCCCGTGCTGGCCGTGACAAGTGGTGGTTCCGCCAGCAGAAGGCTCAGAATGAGGTGCTGCTGACGGTCCACAGCCCAGCAGACACCCCTGTGGGAATCTACAGTGTGACATTGCTGCTCCTCTCCCCTGATGGACACATCCTGGAGCAGACCACACCAGAGACGTTCTACCTGCTCTTCAATCCCTGGTGCAAAGCTGACTCTGTGTACCTCCCTGATGAGGAGCTGCTAGAGGAATACATCCTGAATGAAAATGGCCTCCTTTACCAGGGCTCCTGGGACCAGATCTCCTCACTGTCCTGGAACTTTGGACAGTTTGAACAAGATGTGGTGGATATCTGTTTTGAAATCCTGAACAATTCACCTGCTGCACTGAAAAACCCAGAGATTGACACAGCCAACCGAGCAGATCCAGTGTACGTGAGCAGGACAATTACTGCAATGGTGAACGCTAATGATGACCGTGGCGTGGTGTTGGGTCGCTGGGACGGGAAGTATGACGATGGGGTGTCGCCCACACGCTGGACCGGCAGTGTGGCCATCCTCAGGCGATGGCGCGAGGCCGGGGCACAGAGGGTGCGATACGGACAGTGCTGGGTGTTCTCAGGTGTAGCCTGCACAGTTCTTCGCTGTCTGGGCATACCTACTCGCCCTGTTACAAACTACACCTCTGCCCATGACACTGACGGCAACCTGAATGTGGACTATCTGTATGATGAGCAGCTGAAGAGTGTGTCTGAAGGCAGGAAGGACATGATCTGGAACTACCATTGCTGGGTGGAGTCCTGGATGGACAGGGAGGATCTTCCTAAAGGCTATGATGGGTGGCAGGCTCTGGATCCCACCCCACAGGAGAGGAGTGATGGGGTGTACTGTTGTGGGCCCTGTCCAGTCAAGGCGGTGAGGGACGGTGATGTGGGGATGAAGTATGATGCAGCCTTCGTGTTCTCTGAGGTGAACGCAGACCTGGTTACCTGGATCGTCTACCCAGATGGCCAACGCTCACAGGTTTCCCTCAACCAGAAAACTGTGGGCCGAAATATCAGCACCAAGAGTGTGTATGGAGACTACAGAGAGGACATCACTAAACATTACAAATACCCTGAAGGTTCAGTGAAGGAGCGTGAGGTGTACGAGAAGGCAGGACGGCGGGTAACGCAGCTGAATGGGGCACCGGGGCAGCTGGAGCTGAAGATCAAACATGCCCAGGCCATCCTGGGGACAGACTTTGATGTGATAGTGGAGGTGCACAACGTGGGTGGTGAGGACACCCCGGCCCAGCTCACTGTGACCTCCAACGCAGTCACCTACAACAGTCTTCACCGGGGGGAGTGCCAGAGGAGGACTGCCAGCCTGACCGTGCCAGCCCAGAAAGCTCATAAGGAAGTGATGCGTCTACGGTACGATCACTATGGGGCCTGTGTGTCTGAGCATAACCTGATCAGGGTCACAGCACTACTCCAGGCCAGCAGCCAGCCCGATGTCATTCTGCAAGAGGTCAACATCCCACTAAGCATGCCACAGCTCCATGTCAAGGTAGTGGGAGACGCAGTTGTATCTCAGAAATTAATTGCACACATCAGCTTCACCAATCCCCTGCCTATCACCCTGAGAGGGGGAGTGTTCACAGTGGAGGGTGCAGGTCTGACTGCACCACGGGAGCTCCAAGCACCAGGCAACATTGGCCCAGGTGAAGATGTGAAGGTCAAGTTGTCCTTCAAGCCCACCCGTGCTGGCCTGAGAAAACTGATGGTTGACTTTGATGCAGACAGACTGAGGGATGTTAAGGGGATTGCCACTTTGATTGTGCGAGACAGATTAACTGTGAATTAAGAAAGTATATATTTCATAGGTATATTGTTTACATGTAAACATATCCCTGTGAATGCAATATAAAAGTGAGGTGCAAAATAACGGGATGGTTTTTCATAttattctcttttttttttaccttgtccaAAGTAGTTAAGATTAGCAAAGAAAGGTGGGCCTCTAAAAGTATTGTGAGAGTCCGAAGACTATTTGTGAGAAAAAAGTAACGGTACTCTTACAGTATTTACAGGATATAGCACACTATTTAGAAGCACATATTGCCTAGGACCAAGAAGCATGGAGGCAgtctttagttattatgcccccagcctctggaatagcctgccagagaacctgagggggccAAAACTGTGGACATATATTTTAGAGatcataaaacatattttttgctttgccttagggtgctttttagtTTGTGTCATTCCTTAGTTTTTTTTAActtgtttgttgtgtagtaaatatttcagtgtttattttcatagttacatttttttttattttaaatcctGTAAAGCACATTGCATTGCATTCAATGTCTGGAATGTGCCATATAGATAAGGCTTGATTTGATGATATTGTACACCGCTGTGGCTTAGATATGCATTCTGTTCTTAATAATTTCATACTTGTGAAACATGTCTTACCTTaataaatgatttattttttaaa
>XR_005037658.1
TCCAGTATAAATACGGGGTTCTGGTGGGGACAGTGGTAGAAAAGTGAGGCATACACCTTCAGGGCTGTTTGAAAAGGCACAAGAGGAGTCAAACTTATCATAAAAGGAGGTAACACGGCAGAGAAGAAAAGGAGGAGATATTCACAACAAAGACTGGAAAATGGCTGACCAAAACGGTGTATTCATGGGAGTGGACCTGCGTTGCCAGGTGAACAACCATGCCCATCGTACAGGGGAAATGGACCTGGAAAGGCTGCTGGTTCGTAGGGGGCAGCCCTTCTCCCTCGCTCTGCAGTGCTCCACACCCCTGCCCCCCAAACACAAACTAGCCATGATCCTGCATCTGGGTAAGGAGGGTGAGGTGGTGGTGAAGGTTTTGGATGCCCGTGCTGGCCGTGACAAGTGGTGGTTCCGCCAGCAGAAGGCTCAGAATGAGGTGCTGCTGACGGTCCACAGCCCAGCAGACACCCCTGTGGGAATCTACAGTGTGACATTGCTGCTCCTCTCCCCTGATGGACACATCCTGGAGCAGACCACACCAGAGACGTTCTACCTGCTCTTCAATCCCTGGTGCAAAGCTGACTCTGTGTACCTCCCTGATGAGGAGCTGCTAGAGGAATACATCCTGAATGAAAATGGCCTCCTTTACCAGGGCTCCTGGGACCAGATCTCCTCACTGTCCTGGAACTTTGGACAGTTTGAACAAGATGTGGTGGATATCTGTTTTGAAATCCTGAACAATTCACCTGCTGCACTGAAAAACCCAGAGATTGACACAGCCAACCGAGCAGATCCAGTGTACGTGAGCAGGACAATTACTGCAATGGTGAACGCTAATGATGACCGTGGCGTGGTGTTGGGTCGCTGGGACGGGAAGTATGACGATGGGGTGTCGCCCACACGCTGGACCGGCAGTGTGGCCATCCTCAGGCGATGGCGCGAGGCCGGGGCACAGAGGGTGCGATACGGACAGTGCTGGGTGTTCTCAGGTGTAGCCTGCACAGTTCTTCGCTGTCTGGGCATACCTACTCGCCCTGTTACAAACTACACCTCTGCCCATGACACTGACGGCAACCTGAATGTGGACTATCTGTATGATGAGCAGCTGAAGAGTGTGTCTGAAGGCAGGAAGGACATGATCTGGAACTACCATTGCTGGGTGGAGTCCTGGATGGACAGGGAGGATCTTCCTAAAGGCTATGATGGGTGGCAGGCTCTGGATCCCACCCCACAGGAGAGGAGTGATGGGGTGTACTGTTGTGGGCCCTGTCCAGTCAAGGCGGTGAGGGACGGTGATGTGGGGATGAAGTATGATGCAGCCTTCGTGTTCTCTGAGGTGAACGCAGACCTGGTTACCTGGATCGTCTACCCAGATGGCCAACGCTCACAGGTTTCCCTCAACCAGAAAACTGTGGGCCGAAATATCAGCACCAAGAGTGTGTATGGAGACTACAGAGAGGACATCACTAAACATTACAAATACCCTGAAGGTTCAGTGAAGGAGCGTGAGGTGTACGAGAAGGCAGGACGGCGGGTAACGCAGCTGAATGGGGCACCGGGGCAGCTGGAGCTGAAGATCAAACATGCCCAGGCCATCCTGGGGACAGACTTTGATGTGATAGTGGAGGTGCACAACGTGGGTGGTGAGGACACCCCGGCCCAGCTCACTGTGACCTCCAACGCAGTCACCTACAACAGTCTTCACCGGGGGGAGTGCCAGAGGAGGACTGCCAGCCTGACCGTGCCAGCCCAGAAAGCTCATAAGGAAGTGATGCGTCTACGGTACGATCACTATGGGGCCTGTGTGTCTGAGCATAACCTGATCAGGGTCACAGCACTACTCCAGGCCAGCAGCCAGCCCGATGTCATTCTGCAAGAGGTCAACATCCCACTAAGCATGCCACAGCTCCATGTCAAGGTAGTGGGAGACGCAGTTGTATCTCAGAAATTAATTGCACACATCAGCTTCACCAATCCCCTGCCTATCACCCTGAGAGGGGGAGTGTTCACAGTGGAGGGTGCAGGTCTGACTGCACCACGGGAGCTCCAAGCACCacaaagagagagagccagacatACCCTCCTTTTGCCAGGCCAAAGACGATTGACCTACCAGCCCAACATGGCTCTCCCGGACCACAAGCCAAATGTTACCACACATAACCTCCAACAGGAGACGCCAATGTAAACATAAACCCTCAGACTAAACACAGGATTATTTCTCTGCCCGTCATTGAGAGGCAACATTGGCCCAGGTGAAGATGTGAAGGTCAAGTTGTCCTTCAAGCCCACCCGTGCTGGCCTGAGAAAACTGATGGTTGACTTTGATGCAGACAGACTGAGGGATGTTA
>TU201341
aatatttcagtgtttattttcatagttacatttttttttattttaaatcctGTAAAGCACATTGCATTGCATTCAATGTCTGGAATGTGCCATATAGATAAGGCTTGATTTGATGATATTGTACACCGCTGTGGCTTAGATATGCATTCTGTTCTTAATAATTTCATACTTGTGAAACATGTCTTACCTTaataaatgatttattttttaaatctatgCATGGAGTCTGACATGTCAAAACAGTAAAAATTGACAAATGTTATGACTGacttttttcttatttttacaaaacatattttttaatcTAACCTAGGCAGTCGATAGTGTGCTAGAACTGCACTATCATGGCTTGATGTGCATTCCCAGTAATACACTCGTGTCCCCCATGGACCTGCTCATACATAAAGCATCCTCAGGCTGCAAAGGCATAATTTTCCTCCTTAACTAGCTTTAATGGTGAGAAGTGGATCAAAAAAAGGGGGAAATATGCGTTCTTTCTTTATGAAACACCATTTTCAGACCAATCCACGTTCAGCCAAAAAGTGTGCAACATCGTAATTTGTCCAATAATAAGAAAATGGTTGTGGTAAAAGGCCTTGTCACCATTAAAGCTAGTTGAGAAAAATGATGCCTTCACAGCCTGATTGGAGGATGCTTTATGTACGAGCCAGTCCACAGGGGACACAGGTGTATTACCAGGAATGCACATCAAGCCTAGACGATCAGCTGCCTGAACTAGAGATCATCATGCTGCAACACATTTCAGTCTTTCAGCTCTCTGATGGTGGTGCTTTTCTTCGTACTGCCTTGGACAGTGCTTGCTGAATGACAGGGTAGAGTTTGAAACACCCCTCAATGCATGTGCGCACACCCCCAGTCAGGGTGTCCTCGCCCATCTCGCCATCCGATTGTAGTCCAGAAATCTGGTTCAGACTGGGCAGAAATGCAACTGTCAGGCTTCCCAAATTCTCCCTGGATCCTGAGGCCAAGTTGTATCCATTTTCCTCCAGAAAGGTAGGGTCGATAAGGTATGTGGCACCTTCCTGACGGATTGAGCATCCAAGAACCAGATCGTACATCTCTATACCTGCGTCCACCAGCGCCATTGACGCACAGGTGACTGCATGTGCCAGGACGGCGCCGTCGTTTTCAAGGACCATTACATTTACTTCAATCTGAGAGCGAGGATACTTCTGCAAGCACACTCCTGGCCTCAGGCTCTCCAACAGCATCAGTGACAGATCCTTTTCATCACTACCTTGAATCCACGAGCCTCTCTCTCGACAAGAGAATGGGGCAAATCTCATGTCAGTAATCAGTCTTCCGGATTTCATATCGGTCTCATCCTTGCGCTCAGTCTCTCTGGGTCCATACACACAGCAGATGAGCTTCGTGTTCCCAGCTTCAATGTAAGCTGAACCTTTGGCTTGACTTATCAGCCCACATCGGACAAAAACTGAACGGACATCCACTTGACCACGCTGCCTGCCATCTACCCTGGCGTCGTTGGAAGCGGTGGACTTCTTTACCGCGTTTttacacagaaagagagatggactTTGAGACACTTCTGGGCCACGTACCCTTTTTGTATCAGTCGGCATGGTCGGGGAATAGTTCTTCCAAAAATGTTACTTACTTGGGCCGCGTGCTGTATTTGTCCAAATACTAGTTATTGCGAACTGCTTTTTCTGTTCCGGTTGCTCGATGACTGTATGCTCGATT

Function

NR:

description
exosome complex component MTR3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021569909.2 False 2876 mRNA 0.49 13 69113780 69128027
XR_005037658.1 False 2351 mRNA 0.54 14 69114496 69128035
TU201341 True 1725 lncRNA 0.40 1 69112267 69113991

Neighbor

gene id symbol gene type direction distance location
aars1 aars coding downstream 1909 69096742 ~ 69111871 (-)
sf3b3 sf3b3 coding downstream 54382 69009850 ~ 69059398 (-)
il34 il-34 coding downstream 109881 68980410 ~ 69003899 (-)
lonp2 lonp2 coding downstream 136082 68951337 ~ 68977698 (-)
cdh13 LOC106560870 coding downstream 920887 67666186 ~ 68192893 (-)
LOC110494669 arl2bp coding upstream 10581 69138616 ~ 69140982 (-)
rspry1 LOC106560854 coding upstream 13113 69141148 ~ 69166663 (-)
cpne2 LOC106560852 coding upstream 50998 69179033 ~ 69205373 (-)
nlrc5 LOC106560850 coding upstream 79388 69207423 ~ 69229555 (-)
LOC110494745 LOC106560849 coding upstream 107621 69235656 ~ 69250282 (-)
G177192 NA non-coding downstream 7562 69049020 ~ 69106218 (-)
G177154 NA non-coding downstream 134323 68978979 ~ 68979457 (-)
G176712 NA non-coding downstream 198497 68915008 ~ 68915283 (-)
G176688 NA non-coding downstream 220090 68885939 ~ 68893690 (-)
G176668 NA non-coding downstream 252329 68861177 ~ 68861451 (-)
G177272 NA non-coding upstream 67506 69195541 ~ 69195986 (-)
G177207 NA non-coding upstream 182476 69310511 ~ 69311709 (-)
G177315 NA non-coding upstream 191526 69319561 ~ 69319944 (-)
G177322 NA non-coding upstream 197515 69325550 ~ 69326260 (-)
G177323 NA non-coding upstream 198273 69326308 ~ 69326828 (-)
G174505 NA other downstream 2420930 66692408 ~ 66692850 (-)
G173696 LOC106560906 other downstream 2723014 66375226 ~ 66390766 (-)
G173675 NA other downstream 2775394 66335412 ~ 66338386 (-)
LOC110494122 LOC106560915 other downstream 2815466 66277821 ~ 66299637 (-)
G173431 NA other downstream 3191551 65921850 ~ 65922229 (-)
G177487 NA other upstream 463100 69591135 ~ 69591722 (-)
LOC110494902 LOC106560839 other upstream 565574 69648833 ~ 69767366 (-)
LOC110501848 NA other upstream 1432487 70552263 ~ 70642587 (-)
fam169b fam169b other upstream 1641123 70769140 ~ 70773282 (-)
G179215 NA other upstream 1777337 70905372 ~ 70906254 (-)
G177244 NA non-coding upstream 2876 69116867 ~ 69117163 (-)

Expression


Co-expression Network