XLOC_020679 (cry4)


Basic Information

Item Value
gene id XLOC_020679
gene name cry4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 819656 ~ 834106 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00040886
GAGGAAGGGGCGGGGTCATGTAGTACGTGCGAGGTCTGTGCTAGGCGGATAGCGTGTGTACTTTCATGTAACGATCGTCTTGTAAACATTACTTAGTTACCAGTAATTATACGTGTACGCTAAGGTTGGGTTTTGATTTTTAATTGGTGTTAAGTGTCCTAATGGATGTTGCCTGAGGCGATCTGGAGCCCGTCTGAAGTGTTTTCATCTTGGAGAAAGTCGGTCGCCATGAGTCACCGCACCATCCATCTGTTTCGCAAAGGCCTGCGCCTGCATGATAACCCCAGCCTGTTGGGGGCGCTAGCGTCCTCCTCCGCGCTCTATCCAGTGTACGTCCTGGACCGTGTGTTCCTGCAGGGGGCAATGCACATGGGTGCGTTACGCTGGCGGTTTCTTCTCCAGAGTCTGGAGGATCTGGACACTCGTCTGCAGGCGATTGGATCGCGACTTTTTGTCCTGTGCGGGTCGACGGCTAACATCCTGCGGGAGCTCGTAGCACAGTGGGGAATCACACAAATCAGTTACGACACTGAAGTGGAGCCGTATTACACACGCATGGACAAGGACATACAGACAGTGGCGCAGGAAAATGGACTGCAGACGTACACATGTGTATCGCACACGCTGTACGACGTCAAGAGGATCGTGAAGGCCAACGGAGGCTCTCCGCCGCTCACATACAAGAAGTTCCTGCATGTTTTGTCAGTCTTGGGTGAGCCAGAGAAACCGGCGCGGGATGTGAGCATCGAGGACTTCCAGAGGTGTGTGACTCCTGTGGATGTGGATCGGGTGTATGCTGTGCCTTCTCTGGCTGATCTGGGTCTGCAGGTTGAGGCGGAGGTGCTGTGGCCCGGTGGAGAGAGTCACGCCCTGCAGCGGCTCGAGAAACACTTCCAGAGTCAGGGCTGGGTGGCGAACTTCTCCAAACCGCGCACCATCCCCAACTCTCTGCTGCCCAGCACCACTGGTCTGAGTCCGTACCTGAGTCTGGGCTGCCTTTCTGTTCGAACCTTCTACCACAGACTCAACAGCATCTAcgcacagTCGAAGAACCACTCTCTGCCgccggtgtctctgcagggtCAGGTGTTGTGGCGCGAGTTCTTCTACACCGTCGCTTCCGCAACACCAAACTTCACCAAGATGGAGGGAAACAGCATCTGTCTGCAGATCGACTGGTACCACGATCCAGAGCGGCTGGAGAAATGGAGAACCGCTCAGACGGGTTTTCCCTGGATCGACGCCATCATGACGCAGCTACGGCAGGAGGGCTGGATCCATCACCTGGCGCGTCACGCCGTGGCCTGTTTTCTGACTCGCGGCGACCTGTGGATCAGCTGGGAGGAGGGCATGAAGgtGTTCGAGGAGTTCCTGTTGGATGCAGACTACAGTGTGAACGCCGGGAACTGGATGTGGCTGTCCGCTAGTGCGTTCTTCCACAAATACACCAGGATCTTCTGTCCTGTGCGTTTCGGCCGTCGGACTGACCCTCAAGGAGAGTATCTGAGAAAGTACTTACCTGTGCTGAAGAACTTCCCCTCTCAGTATATTTACGAGCCGTGGAAAGCACCAGAAGACGTCCAGCTTAGCGCCGGCTGCATCATCGgtaaaGACTATCCCCGGCCAATAGTGAGCCACATAGAGGCCAGCCAGAGGAACCTGGCATTGATGCGTCAGGTGCGGACAGAGCAGCAGACGACCGCAGAACTCACGCGAGATGTAGCAGATGACCCGATGGAGGCGGGGCTTAAGCGTGAGCTCCGGGAGGAGGAGGGGCTTCTGGAGGAGGCGGAGTCACAGTGCACTTCCAAGCGTTTCAGTGGCAGCTCAGACCATAAGTCCCGCCCCTGCAGCTGGACTCCAGAGACTCTACAGCTATCAGAGCTCAGCGGAGAGGTCATGTGACTCGAACACTGGCCGATCAAATGAATGTTTTACGACCCAGAAGCCTATATGATGCATTTCTGCTTTAACACATGCACAAAGACTCACAGGAATACTCCGTCATAATGAGCAGAACTCTCAGAAAGCATCTGAACTCCATTAATCCCTCAAACACAACCATATTGGCTgcttttgttggttttgttttgctagcgtgtgtgtgttttctgtgttcaGGAGAGAACTGTGTACATTGAACAGAGTTTGTGAAGTAAATATGCAATAATGAAGTCTTTATGCTCATTGAACACATGTCGATgtaatgcaaattaaaaaaaatcatca

Function

symbol description
cry4 Enables photoreceptor activity. Predicted to be involved in circadian regulation of gene expression and entrainment of circadian clock by photoperiod. Predicted to act upstream of or within protein-chromophore linkage. Located in cytoplasm. Is expressed in several structures, including brain; eye; heart; integument; and pleuroperitoneal region.

GO:

id name namespace
GO:0032922 circadian regulation of gene expression biological_process
GO:0043153 entrainment of circadian clock by photoperiod biological_process
GO:0007165 signal transduction biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0009881 photoreceptor activity molecular_function
GO:0003677 DNA binding molecular_function
GO:0071949 FAD binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-010426-7 Enables photoreceptor activity. Predicted to be involved in circadian regulation of gene expression and entrainment of circadian clock by photoperiod. Predicted to act upstream of or within protein-chromophore linkage. Located in cytoplasm. Is expressed in several structures, including brain; eye; heart; integument; and pleuroperitoneal region.

Ensembl:

ensembl_id ENSDARG00000011890

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00040886 True 2229 mRNA 0.54 11 819656 834106

Neighbor

gene id symbol gene type direction distance location
XLOC_020678 TMEM263 coding downstream 2177 812848 ~ 817479 (-)
XLOC_020677 rbbp5 coding downstream 35546 770001 ~ 784110 (-)
XLOC_020676 NA coding downstream 58770 739300 ~ 760886 (-)
XLOC_020675 NA coding downstream 84412 733244 ~ 735244 (-)
XLOC_020674 arl8a coding downstream 101041 710759 ~ 718615 (-)
XLOC_020680 dram2b coding upstream 22763 856869 ~ 866196 (-)
XLOC_020681 cept1b coding upstream 32575 866681 ~ 881725 (-)
XLOC_020682 KCTD20 coding upstream 64025 898131 ~ 910926 (-)
XLOC_020683 cacna1sa coding upstream 78344 912450 ~ 968484 (-)
XLOC_020684 NA coding upstream 184239 1018345 ~ 1023531 (-)
XLOC_020673 NA non-coding downstream 114749 700213 ~ 704907 (-)
XLOC_020672 NA non-coding downstream 122152 659917 ~ 697504 (-)
XLOC_020664 NA non-coding downstream 423756 392619 ~ 395900 (-)
XLOC_020686 NA non-coding upstream 322324 1156430 ~ 1168291 (-)
XLOC_020687 NA non-coding upstream 347978 1182084 ~ 1182479 (-)
XLOC_020689 CU570769.4 non-coding upstream 395800 1229906 ~ 1230022 (-)
XLOC_020690 NA non-coding upstream 426844 1260950 ~ 1269440 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G51893 NA non-coding CI01000009 null 707832 ~ 708090 (-)
grasscarp (Ctenopharyngodon idella) CI01000186_00252556_00256882 NA coding CI01000186 null 252556 ~ 257269 (+)