LOC110494669 (arl2bp)


Basic Information

Item Value
gene id LOC110494669
gene name arl2bp
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 69138616 ~ 69140982 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021569961.2
GTCTGAAGGGAGCGTTTTTTTCGTTGCCTTGGTAATTTGGTGCCTTGGAAGCGATTACCGAAAATCCGACACGTTAGCTTGATAGCTAGCTAATTAGATTTAGAATGGACGTGAAAGAGCGAAGTAATTAACTTGACAAATTATCTGCTGGGTGGTGCAGAGAACATCGTTGAAATGATGGACTTAGAGGAAGAGAATTTTGCTGTTTCAAAGTATGTGTGTCTGAGGAACTCATCAGATGCTGATGCTGCCTTTGATGCTGTCATTGGGAGTATTGAAGACATCATCATGGAGGATGACTTCCAGCACCTGCAAAAGAGCTTCATGGAGAAACACTACCTGGAGTTTGATGACTCAGAGGAGAACAAACTCACCTACACACCCATCTTCAACGAATATATTGAGATGCTTGAGAAACGCCTCGAGCAGCAGCTGATGGAGAGGATTCCCTGTTTCAACATGAGCACATTTAACCATTTACTCAAGCAGCACAAAGATGAGGTGTCAGGAGACATCTTCGACATGTTGCTTACCTTTACAGATTTTATGGCCTTCAAGGAAATGTTAATTGACTACAGAGCAGAGAGGGAGGGCCGAGGGCTGGACCTCAGTGATGGCCTAGTCGTGAGGTCTCTCAGCTCTGCAACCTCTAAACCCATCACCTCCAGAACAACAGAACTGAAATAACGAATTAACAATCATCCCCAAACCTACAAACATGCACATTCATGTCAAATAGAGTAGTGCCGCTGGTGACCGAACATAAGTGTTCATGTCTTGCCCATGCTCACCTTTTCTATTTAAACTGTTGCAGGTTTGCAATGGGAATGTTATCAGTATATTTTACATCTAGCCATTCTCTGGTGAAGATGGACACTTTTGTCCTCATggaacaagttttttttttttattgaatttgTGAACTCAATTAttttttgagttttgtgtctgaTTTTTACATCAGTACACATATGTCTGAAGTTCTAAAACAAACAGTATTTTTATTACGTCAAGCACTCAGTGAATGTCACCGGTTTGTGCATATTTGCTTATGTCCCATTGTCTGTAAATAATGGTTTCAAATAAAGACATTCTGTAAAATCA
>XM_021569974.2
GTCTGAAGGGAGCGTTTTTTTCGTTGCCTTGGTAATTTGGTGCCTTGGAAGCGATTACCGAAAATCCGACACGTTAGCTTGATAGCTAGCTAATTAGATTTAGAATGGACGTGAAAGAGCGAAGTAATTAACTTGACAAATTATCTGCTGGGTGGTGCAGAGAACATCGTTGAAATGATGGACTTAGAGGAAGAGAATTTTGCTGTTTCAAACTCATCAGATGCTGATGCTGCCTTTGATGCTGTCATTGGGAGTATTGAAGACATCATCATGGAGGATGACTTCCAGCACCTGCAAAAGAGCTTCATGGAGAAACACTACCTGGAGTTTGATGACTCAGAGGAGAACAAACTCACCTACACACCCATCTTCAACGAATATATTGAGATGCTTGAGAAACGCCTCGAGCAGCAGCTGATGGAGAGGATTCCCTGTTTCAACATGAGCACATTTAACCATTTACTCAAGCAGCACAAAGATGAGGTGTCAGGAGACATCTTCGACATGTTGCTTACCTTTACAGATTTTATGGCCTTCAAGGAAATGTTAATTGACTACAGAGCAGAGAGGGAGGGCCGAGGGCTGGACCTCAGTGATGGCCTAGTCGTGAGGTCTCTCAGCTCTGCAACCTCTAAACCCATCACCTCCAGAACAACAGAACTGAAATAACGAATTAACAATCATCCCCAAACCTACAAACATGCACATTCATGTCAAATAGAGTAGTGCCGCTGGTGACCGAACATAAGTGTTCATGTCTTGCCCATGCTCACCTTTTCTATTTAAACTGTTGCAGGTTTGCAATGGGAATGTTATCAGTATATTTTACATCTAGCCATTCTCTGGTGAAGATGGACACTTTTGTCCTCATggaacaagttttttttttttattgaatttgTGAACTCAATTAttttttgagttttgtgtctgaTTTTTACATCAGTACACATATGTCTGAAGTTCTAAAACAAACAGTATTTTTATTACGTCAAGCACTCAGTGAATGTCACCGGTTTGTGCATATTTGCTTATGTCCCATTGTCTGTAAATAATGGTTTCAAATAAAGACATTCTGTAAAATCA
>XM_021569942.2
TCAAGGGACTTCATTGTCTGAAGGGAGCGTTTTTTTCGTTGCCTTGGTAATTTGGTGCCTTGGAAGCGATTACCGAAAATCCGACACGTTAGCTTGATAGCTAGCTAATTAGATTTAGAATGGACGTGAAAGAGCGAAATCTGCTGGGTGGTGCAGAGAACATCGTTGAAATGATGGACTTAGAGGAAGAGAATTTTGCTGTTTCAAAGTATGTGTGTCTGAGGAACTCATCAGATGCTGATGCTGCCTTTGATGCTGTCATTGGGAGTATTGAAGACATCATCATGGAGGATGACTTCCAGCACCTGCAAAAGAGCTTCATGGAGAAACACTACCTGGAGTTTGATGACTCAGAGGAGAACAAACTCACCTACACACCCATCTTCAACGAATATATTGAGATGCTTGAGAAACGCCTCGAGCAGCAGCTGATGGAGAGGATTCCCTGTTTCAACATGAGCACATTTAACCATTTACTCAAGCAGCACAAAGATGAGGTGTCAGGAGACATCTTCGACATGTTGCTTACCTTTACAGATTTTATGGCCTTCAAGGAAATGTTAATTGACTACAGAGCAGAGAGGGAGGGCCGAGGGCTGGACCTCAGTGATGGCCTAGTCGTGAGGTCTCTCAGCTCTGCAACCTCTAAACCCATCACCTCCAGAACAACAGAACTGAAATAACGAATTAACAATCATCCCCAAACCTACAAACATGCACATTCATGTCAAATAGAGTAGTGCCGCTGGTGACCGAACATAAGTGTTCATGTCTTGCCCATGCTCACCTTTTCTATTTAAACTGTTGCAGGTTTGCAATGGGAATGTTATCAGTATATTTTACATCTAGCCATTCTCTGGTGAAGATGGACACTTTTGTCCTCATggaacaagttttttttttttattgaatttgTGAACTCAATTAttttttgagttttgtgtctgaTTTTTACATCAGTACACATATGTCTGAAGTTCTAAAACAAACAGTATTTTTATTACGTCAAGCACTCAGTGAATGTCACCGGTTTGTGCATATTTGCTTATGTCCCATTGTCTGTAAATAATGGTTTCAAATAAAGACATTCTGTAAAATCA
>XM_021569952.2
TTCCTCAAGGGACTTCATTGTCTGAAGGGAGCGTTTTTTTCGTTGCCTTGGTAATTTGGTGCCTTGGAAGCGATTACCGAAAATCCGACACGTTAGCTTGATAGCTAGCTAATTAGATTTAGAATGGACGTGAAAGAGCGAAATCTGCTGGGTGGTGCAGAGAACATCGTTGAAATGATGGACTTAGAGGAAGAGAATTTTGCTGTTTCAAACTCATCAGATGCTGATGCTGCCTTTGATGCTGTCATTGGGAGTATTGAAGACATCATCATGGAGGATGACTTCCAGCACCTGCAAAAGAGCTTCATGGAGAAACACTACCTGGAGTTTGATGACTCAGAGGAGAACAAACTCACCTACACACCCATCTTCAACGAATATATTGAGATGCTTGAGAAACGCCTCGAGCAGCAGCTGATGGAGAGGATTCCCTGTTTCAACATGAGCACATTTAACCATTTACTCAAGCAGCACAAAGATGAGGTGTCAGGAGACATCTTCGACATGTTGCTTACCTTTACAGATTTTATGGCCTTCAAGGAAATGTTAATTGACTACAGAGCAGAGAGGGAGGGCCGAGGGCTGGACCTCAGTGATGGCCTAGTCGTGAGGTCTCTCAGCTCTGCAACCTCTAAACCCATCACCTCCAGAACAACAGAACTGAAATAACGAATTAACAATCATCCCCAAACCTACAAACATGCACATTCATGTCAAATAGAGTAGTGCCGCTGGTGACCGAACATAAGTGTTCATGTCTTGCCCATGCTCACCTTTTCTATTTAAACTGTTGCAGGTTTGCAATGGGAATGTTATCAGTATATTTTACATCTAGCCATTCTCTGGTGAAGATGGACACTTTTGTCCTCATggaacaagttttttttttttattgaatttgTGAACTCAATTAttttttgagttttgtgtctgaTTTTTACATCAGTACACATATGTCTGAAGTTCTAAAACAAACAGTATTTTTATTACGTCAAGCACTCAGTGAATGTCACCGGTTTGTGCATATTTGCTTATGTCCCATTGTCTGTAAATAATGGTTTCAAATAAAGACATTCTGTAAAATCA
>XM_021569970.2
AACATTGAACGTTAATTTCAATTCAACCGATGTTGAGAGCCTGACCGTaccgtactgtactgtatttacGGAACTAATCCGCTGGGATCTGTTTCCTCAAGGGACTTCATTGTCTGAAGGGAGCGTTTTTTTCGTTGCCTTGATCTGCTGGGTGGTGCAGAGAACATCGTTGAAATGATGGACTTAGAGGAAGAGAATTTTGCTGTTTCAAAGTATGTGTGTCTGAGGAACTCATCAGATGCTGATGCTGCCTTTGATGCTGTCATTGGGAGTATTGAAGACATCATCATGGAGGATGACTTCCAGCACCTGCAAAAGAGCTTCATGGAGAAACACTACCTGGAGTTTGATGACTCAGAGGAGAACAAACTCACCTACACACCCATCTTCAACGAATATATTGAGATGCTTGAGAAACGCCTCGAGCAGCAGCTGATGGAGAGGATTCCCTGTTTCAACATGAGCACATTTAACCATTTACTCAAGCAGCACAAAGATGAGGTGTCAGGAGACATCTTCGACATGTTGCTTACCTTTACAGATTTTATGGCCTTCAAGGAAATGTTAATTGACTACAGAGCAGAGAGGGAGGGCCGAGGGCTGGACCTCAGTGATGGCCTAGTCGTGAGGTCTCTCAGCTCTGCAACCTCTAAACCCATCACCTCCAGAACAACAGAACTGAAATAACGAATTAACAATCATCCCCAAACCTACAAACATGCACATTCATGTCAAATAGAGTAGTGCCGCTGGTGACCGAACATAAGTGTTCATGTCTTGCCCATGCTCACCTTTTCTATTTAAACTGTTGCAGGTTTGCAATGGGAATGTTATCAGTATATTTTACATCTAGCCATTCTCTGGTGAAGATGGACACTTTTGTCCTCATggaacaagttttttttttttattgaatttgTGAACTCAATTAttttttgagttttgtgtctgaTTTTTACATCAGTACACATATGTCTGAAGTTCTAAAACAAACAGTATTTTTATTACGTCAAGCACTCAGTGAATGTCACCGGTTTGTGCATATTTGCTTATGTCCCATTGTCTGTAAATAATGGTTTCAAATAAAGACATTCTGTAAAATCA
>XM_021569983.2
AACATTGAACGTTAATTTCAATTCAACCGATGTTGAGAGCCTGACCGTaccgtactgtactgtatttacGGAACTAATCCGCTGGGATCTGTTTCCTCAAGGGACTTCATTGTCTGAAGGGAGCGTTTTTTTCGTTGCCTTGATCTGCTGGGTGGTGCAGAGAACATCGTTGAAATGATGGACTTAGAGGAAGAGAATTTTGCTGTTTCAAACTCATCAGATGCTGATGCTGCCTTTGATGCTGTCATTGGGAGTATTGAAGACATCATCATGGAGGATGACTTCCAGCACCTGCAAAAGAGCTTCATGGAGAAACACTACCTGGAGTTTGATGACTCAGAGGAGAACAAACTCACCTACACACCCATCTTCAACGAATATATTGAGATGCTTGAGAAACGCCTCGAGCAGCAGCTGATGGAGAGGATTCCCTGTTTCAACATGAGCACATTTAACCATTTACTCAAGCAGCACAAAGATGAGGTGTCAGGAGACATCTTCGACATGTTGCTTACCTTTACAGATTTTATGGCCTTCAAGGAAATGTTAATTGACTACAGAGCAGAGAGGGAGGGCCGAGGGCTGGACCTCAGTGATGGCCTAGTCGTGAGGTCTCTCAGCTCTGCAACCTCTAAACCCATCACCTCCAGAACAACAGAACTGAAATAACGAATTAACAATCATCCCCAAACCTACAAACATGCACATTCATGTCAAATAGAGTAGTGCCGCTGGTGACCGAACATAAGTGTTCATGTCTTGCCCATGCTCACCTTTTCTATTTAAACTGTTGCAGGTTTGCAATGGGAATGTTATCAGTATATTTTACATCTAGCCATTCTCTGGTGAAGATGGACACTTTTGTCCTCATggaacaagttttttttttttattgaatttgTGAACTCAATTAttttttgagttttgtgtctgaTTTTTACATCAGTACACATATGTCTGAAGTTCTAAAACAAACAGTATTTTTATTACGTCAAGCACTCAGTGAATGTCACCGGTTTGTGCATATTTGCTTATGTCCCATTGTCTGTAAATAATGGTTTCAAATAAAGACATTCTGTAAAATCA

Function

symbol description
arl2bp Predicted to be involved in maintenance of protein location in nucleus and positive regulation of tyrosine phosphorylation of STAT protein. Predicted to be located in several cellular components, including cilium; microtubule cytoskeleton; and mitochondrion. Predicted to be active in mitochondrial intermembrane space. Human ortholog(s) of this gene implicated in retinitis pigmentosa with or without situs inversus. Orthologous to human ARL2BP (ADP ribosylation factor like GTPase 2 binding protein).

NR:

description
ADP-ribosylation factor-like protein 2-binding protein isoform X2

GO: NA

KEGG:

id description
K16742 ARL2BP, BART; ADP-ribosylation factor-like protein 2-binding protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021569961.2 False 1104 mRNA 0.41 7 69138616 69140871
XM_021569974.2 False 1086 mRNA 0.41 7 69138616 69140871
XM_021569942.2 False 1100 mRNA 0.41 7 69138616 69140886
XM_021569952.2 False 1086 mRNA 0.41 7 69138616 69140890
XM_021569970.2 False 1104 mRNA 0.41 7 69138616 69140982
XM_021569983.2 True 1086 mRNA 0.41 7 69138616 69140982

Neighbor

gene id symbol gene type direction distance location
LOC110494649 LOC106560856 coding downstream 10581 69112267 ~ 69128035 (-)
aars1 aars coding downstream 26745 69096742 ~ 69111871 (-)
sf3b3 sf3b3 coding downstream 79218 69009850 ~ 69059398 (-)
il34 il-34 coding downstream 134717 68980410 ~ 69003899 (-)
lonp2 lonp2 coding downstream 160918 68951337 ~ 68977698 (-)
rspry1 LOC106560854 coding upstream 166 69141148 ~ 69166663 (-)
cpne2 LOC106560852 coding upstream 38051 69179033 ~ 69205373 (-)
nlrc5 LOC106560850 coding upstream 66441 69207423 ~ 69229555 (-)
LOC110494745 LOC106560849 coding upstream 94674 69235656 ~ 69250282 (-)
herpud1 herp1 coding upstream 110305 69251287 ~ 69265605 (-)
G177244 NA non-coding downstream 21453 69116867 ~ 69117163 (-)
G177192 NA non-coding downstream 32398 69049020 ~ 69106218 (-)
G177154 NA non-coding downstream 159159 68978979 ~ 68979457 (-)
G176712 NA non-coding downstream 223333 68915008 ~ 68915283 (-)
G177272 NA non-coding upstream 54559 69195541 ~ 69195986 (-)
G177207 NA non-coding upstream 169529 69310511 ~ 69311709 (-)
G177315 NA non-coding upstream 178579 69319561 ~ 69319944 (-)
G177322 NA non-coding upstream 184568 69325550 ~ 69326260 (-)
G177323 NA non-coding upstream 185326 69326308 ~ 69326828 (-)
G174505 NA other downstream 2445766 66692408 ~ 66692850 (-)
G173696 LOC106560906 other downstream 2747850 66375226 ~ 66390766 (-)
G173675 NA other downstream 2800230 66335412 ~ 66338386 (-)
LOC110494122 LOC106560915 other downstream 2840302 66277821 ~ 66299637 (-)
G173431 NA other downstream 3216387 65921850 ~ 65922229 (-)
G177487 NA other upstream 450153 69591135 ~ 69591722 (-)
LOC110494902 LOC106560839 other upstream 552627 69648833 ~ 69767366 (-)
LOC110501848 NA other upstream 1419540 70552263 ~ 70642587 (-)
fam169b fam169b other upstream 1628176 70769140 ~ 70773282 (-)
G179215 NA other upstream 1764390 70905372 ~ 70906254 (-)

Expression


Co-expression Network