rspry1 (LOC106560854)


Basic Information

Item Value
gene id rspry1
gene name LOC106560854
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 69141148 ~ 69166663 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021569922.2
TTTCTGTGATGGGTCTAATTTTCAATAGCTCACTCTCCATATGAGCTGCAGATCTACAGCCAATTGCGGTGGTTTCTTATCTTATCAAATGGACATCtttttttttcaaaattcctCCCTGTTGATTTTCTACAAATATGTATTATATTACAGCTGTGGTTATTCATTTACGTACAGATCAAATGTTCAATAGCTTCCAGTCCAAATTACATATACATCTAAAATCACTTGGGGTTAGGTCTCTGAACTCCCTCGTCCATAGTACCAAAGACACTCGTTAAGAAACAAAAAAATTAACTAAAGTTGTTTAGAAACTCGTGCTGCCGTATCAAGCTACTCCGGTCCTGGTGACAGCTGATCAGATGGGGGATAGCCGACACTACGGAACTAGCTATCCGTACAGCCGTCAACGAAATCAGACAAAGGGGTGTGAGGAAGTAAATGTTTTACACGATTGAATCAAGAAGGAGTGGATTAAATATGAATGTTAACTAGCTTGTTAGCTTATTTTGTTGATAGCTACCGTGTTATCTAGCAAGGTAGGCTacacgttagctagcgagcctaACGTAAACGCTTTTTCCCTAAAGCTTTTGAGGCCTGTTCATCTCCTGACAGTTTATTTTATAGTTCTTTAACCGAGGACACAACTAGCTCATTTGCGAGCTATCTGCCATCCGCAGCAGCAGGATGACTGACGTACCCATCCGAATCATCATGAGACGCCTCCACCAGGGCTCCAAATGATATGATAGTAGCTAGCTGGATTGCATTCTGTGCCAGCAGGAGCCTTGTGCAGGTTCTGCTGCTCTCATTGGAGCAGTTATCACTAGGGTTTTGGGAAAGCCTTGAGACATCCGGGACTATGGGAAACAGCTGCGTTTGTAGAGAAGAAAGTGACGTGGAGGATGGATCCGCAACTCGCAGGCAACTCAGGCGAGTTGATCACCCCGCTGCCGATCCCCCTGAGGCACGAAGCAGTCGGCCCCGGGACCCTGTCAGACCCCCACGGCGTGGCCGGGGACCCCATGAACCCCGCCGGAAGAAACAAAACGTGGATGGGTTGGTGCTGGACACACTAGCTGTGATCAGGACTCTAGTTGACAAcGACCAAGAGCCCCCCTACTCCATGATCACGCTGCATGAGATGGCAGAAACGGATGACGGCTGGTTGGAGGTGGTCCAGTCTCTGATCCGGGTCATACCGCTGGACGACCCACTGGGACCAGCTGTGATTACCCTGCTGCTTGACGAGTGCCCACTGCCCACCAAAGATGCTCTACAGAAGTTGTCTGAGATGCTGAGCTTGAGTGCCACTGTGGCCCGCCAGGATGCCATCATCCCTTCTAAGCACCGCAACACTACTGCTGTACTGGGCTGCCTGGCTGAGAAACTGGCTGGTCCAGCCAGCATTGGACTCCTGAGCCCTGGAACTCTGGGGTACCTGCTGGAGAGCCTGAGTTCTGAGGCCCATCCTACTGTAATGCTCTTTGCCCTCATAGCCTTGGAGAAGTTCTCACAGACCAGTGAGAACAAGCTAACAGTGTCTGAGTCGTGTATAAGTGAACGACTGGGGGTTCTGGAATCGTGGGCTGACCACACAGACTACCTGAAGCGCCAGGTCGGCTTCTGTTCCCAATGGAGCCTAGATAACCTCTTCCTGAAAGATGGCCGTCAGTTCACCTACGAGAAGGTGAACTTGAGCAACATCAACGCCATGCTGAACAGCAACGACGTCAGCGAGTATCTCAAGATCTCTCCCAGTGGACTGGAGGCGCGCTGCGACGCGTCCTCCTTTGAGAGTGTCCGCTGTACCTTCTGTGTGGACTCAGGCGTGTGGTACTATGAGGTCACAGTGGTCACCTCCGGGGTCATGCAGATTGGCTGGGCCACCAAGGACAGCAAGTTCCTTAACCATgagggTTATGGGATAGGAGATGATGAATACTCGTGTGCATATGATGGCTGCAGGCAGCTAATCTGGTACAACGCTCGCAGTAAACCACACTCCCACCCCTGCTGGAAAGAGGGAGATGCCATAGGTTTCCTACTGGACCTCAGTAAGAAGCAGATGCTTTTCTACCTGAATGGACATCAGCTCCCCTCAGAGAAGCAGGTGTTTTCCTCTGCAACGTCTGGCTTCTTTGCAGCAGCAAGTTTCATGTCCTACCAACAATGTGAGTTTAACTTTGGGGCGAAGCCCTTCCGCCATCCCCCGTCTGTCAAGTTCAGCACCTTCAATGACTTTGCCTCACTGGCGTCTGATGAGAAGATTATCCTTCCCAGACACCGGCGCCTGGCCCTGCTCAAGCAGGTGAGCATCAGAGACAACTGTTGCACCCTCTGCTGTGACCAGATGGCCGATACAGAGCTGAGACCCTGCGGACACAGTGGGATGTGTATGGAGTGTGCCTTACAGCTGGAGACGTGCCCGTTGTGTCGCCAGGACATCCTGACCCGTGTCAGACTCATCTCACATGTGTCCTGACACATCACCTTCAAACCAGGACATGAACGCTCCTCCCCTCCTATCACCTTTATCCCAGTAATCAACCCGACCAATAGGACTGTGAGGCTGTGCCAGGGTTCCTGATCGGACCCTGGGCCTAATGTGAGGAGGGAGTGATGGGacctgacagagctccaggaGAGATACAGTGTGGGGGATAGTGTAGGGAGAATAGGACAAGGAGGGGTAACCCTTTCTTCTGCTGCACTCCATGGCTTGTTCTCTCTGTGAGGAGATGGGGCCCCACACCCCGTCTGGGAGCAAAAAAAGTGCTTGTAGAGTGAGGGGGCAGTGGGAGGAAGACAATTAGAGACATTACCAGGCAGCAGCATTTCCAGAATCACCCCATCAATCTTAATGTCATAAACTCAGTGTCTGCACATGGATCTGCCTAATGTTCCCTCTCTTAGGCTCTGGTCAATATGTCCTGTGTATCTCTGCTCAGAGGTTTTACATGTATCTGTGATTCTCTTGTTTTATTCTGACTAAACGTAAAGGCACAACAATGAAGAGACAGCCTTGGTTGGTTCAGTTGGCTGAGACAATGATGTTAAGGCCCTGCTCGATCATACAATATTAACTGAGCACAGatttgtccctctctcctctacttgaAGCATTTCTGGGTTGAGTAACCATGCTGTTATAAATGAGATTGAACATTTTATGAAATAACTGTTACACAAAATATTATTATCTACAATTCAAACAAAATGTAATGAAATTGGGGTTATTGAAATCACAGCTAATCACATTTTAATTATAGGGTTATATGAAGTGGTTGTGGAAAATCTGAAGGTACTACATCTCAATCAATACGAATGACTACATTTGGCCACAGTGTGTATATATGGAGGACCAGTTGTCTCCAGTCCACTCCTGACAATGATTTAGTCATGGAAGAAATTAAGAGTTAAACGTTCAATTGTATCTGTCTTTAATGGAGTAGCCCCAGGGGTTACAAAGATGTGATTTACTGAATAATCATTGTTTTCTGGGTTATGATAATtgtaataaatgtattgtgttgCATA
>XM_021569929.2
CTGAATGGCTCTGGTTGAATTCTCGCACATACTTTATttaaacattttcggctaactgTATAACAATCTAATTTGCAACTGCAGATTAGAAAACCTAAATTATAAATCTATAATTTACTGGTTGTAGAACGATTCTGGATGATTGAGAAAACTTCCATAGACATCACTCCATCCAAATACCGCCATATTTTTGAATTCAGTTTAGATATTCGGATTCGGTCTCTTCAACGGAAAGTTTTATGATGATTAGAGTGATACATCAAGAATAAGATGACGATAGAGAGCAAGCTATCTGCCATCCGCAGCAGCAGGATGACTGACGTACCCATCCGAATCATCATGAGACGCCTCCACCAGGGCTCCAAATGATATGATAGTAGCTAGCTGGATTGCATTCTGTGCCAGCAGGAGCCTTGTGCAGGTTCTGCTGCTCTCATTGGAGCAGTTATCACTAGGGTTTTGGGAAAGCCTTGAGACATCCGGGACTATGGGAAACAGCTGCGTTTGTAGAGAAGAAAGTGACGTGGAGGATGGATCCGCAACTCGCAGGCAACTCAGGCGAGTTGATCACCCCGCTGCCGATCCCCCTGAGGCACGAAGCAGTCGGCCCCGGGACCCTGTCAGACCCCCACGGCGTGGCCGGGGACCCCATGAACCCCGCCGGAAGAAACAAAACGTGGATGGGTTGGTGCTGGACACACTAGCTGTGATCAGGACTCTAGTTGACAAcGACCAAGAGCCCCCCTACTCCATGATCACGCTGCATGAGATGGCAGAAACGGATGACGGCTGGTTGGAGGTGGTCCAGTCTCTGATCCGGGTCATACCGCTGGACGACCCACTGGGACCAGCTGTGATTACCCTGCTGCTTGACGAGTGCCCACTGCCCACCAAAGATGCTCTACAGAAGTTGTCTGAGATGCTGAGCTTGAGTGCCACTGTGGCCCGCCAGGATGCCATCATCCCTTCTAAGCACCGCAACACTACTGCTGTACTGGGCTGCCTGGCTGAGAAACTGGCTGGTCCAGCCAGCATTGGACTCCTGAGCCCTGGAACTCTGGGGTACCTGCTGGAGAGCCTGAGTTCTGAGGCCCATCCTACTGTAATGCTCTTTGCCCTCATAGCCTTGGAGAAGTTCTCACAGACCAGTGAGAACAAGCTAACAGTGTCTGAGTCGTGTATAAGTGAACGACTGGGGGTTCTGGAATCGTGGGCTGACCACACAGACTACCTGAAGCGCCAGGTCGGCTTCTGTTCCCAATGGAGCCTAGATAACCTCTTCCTGAAAGATGGCCGTCAGTTCACCTACGAGAAGGTGAACTTGAGCAACATCAACGCCATGCTGAACAGCAACGACGTCAGCGAGTATCTCAAGATCTCTCCCAGTGGACTGGAGGCGCGCTGCGACGCGTCCTCCTTTGAGAGTGTCCGCTGTACCTTCTGTGTGGACTCAGGCGTGTGGTACTATGAGGTCACAGTGGTCACCTCCGGGGTCATGCAGATTGGCTGGGCCACCAAGGACAGCAAGTTCCTTAACCATgagggTTATGGGATAGGAGATGATGAATACTCGTGTGCATATGATGGCTGCAGGCAGCTAATCTGGTACAACGCTCGCAGTAAACCACACTCCCACCCCTGCTGGAAAGAGGGAGATGCCATAGGTTTCCTACTGGACCTCAGTAAGAAGCAGATGCTTTTCTACCTGAATGGACATCAGCTCCCCTCAGAGAAGCAGGTGTTTTCCTCTGCAACGTCTGGCTTCTTTGCAGCAGCAAGTTTCATGTCCTACCAACAATGTGAGTTTAACTTTGGGGCGAAGCCCTTCCGCCATCCCCCGTCTGTCAAGTTCAGCACCTTCAATGACTTTGCCTCACTGGCGTCTGATGAGAAGATTATCCTTCCCAGACACCGGCGCCTGGCCCTGCTCAAGCAGGTGAGCATCAGAGACAACTGTTGCACCCTCTGCTGTGACCAGATGGCCGATACAGAGCTGAGACCCTGCGGACACAGTGGGATGTGTATGGAGTGTGCCTTACAGCTGGAGACGTGCCCGTTGTGTCGCCAGGACATCCTGACCCGTGTCAGACTCATCTCACATGTGTCCTGACACATCACCTTCAAACCAGGACATGAACGCTCCTCCCCTCCTATCACCTTTATCCCAGTAATCAACCCGACCAATAGGACTGTGAGGCTGTGCCAGGGTTCCTGATCGGACCCTGGGCCTAATGTGAGGAGGGAGTGATGGGacctgacagagctccaggaGAGATACAGTGTGGGGGATAGTGTAGGGAGAATAGGACAAGGAGGGGTAACCCTTTCTTCTGCTGCACTCCATGGCTTGTTCTCTCTGTGAGGAGATGGGGCCCCACACCCCGTCTGGGAGCAAAAAAAGTGCTTGTAGAGTGAGGGGGCAGTGGGAGGAAGACAATTAGAGACATTACCAGGCAGCAGCATTTCCAGAATCACCCCATCAATCTTAATGTCATAAACTCAGTGTCTGCACATGGATCTGCCTAATGTTCCCTCTCTTAGGCTCTGGTCAATATGTCCTGTGTATCTCTGCTCAGAGGTTTTACATGTATCTGTGATTCTCTTGTTTTATTCTGACTAAACGTAAAGGCACAACAATGAAGAGACAGCCTTGGTTGGTTCAGTTGGCTGAGACAATGATGTTAAGGCCCTGCTCGATCATACAATATTAACTGAGCACAGatttgtccctctctcctctacttgaAGCATTTCTGGGTTGAGTAACCATGCTGTTATAAATGAGATTGAACATTTTATGAAATAACTGTTACACAAAATATTATTATCTACAATTCAAACAAAATGTAATGAAATTGGGGTTATTGAAATCACAGCTAATCACATTTTAATTATAGGGTTATATGAAGTGGTTGTGGAAAATCTGAAGGTACTACATCTCAATCAATACGAATGACTACATTTGGCCACAGTGTGTATATATGGAGGACCAGTTGTCTCCAGTCCACTCCTGACAATGATTTAGTCATGGAAGAAATTAAGAGTTAAACGTTCAATTGTATCTGTCTTTAATGGAGTAGCCCCAGGGGTTACAAAGATGTGATTTACTGAATAATCATTGTTTTCTGGGTTATGATAATtgtaataaatgtattgtgttgCATA

Function

NR:

description
RING finger and SPRY domain-containing protein 1-like

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K23332 RSPRY1; RING finger and SPRY domain-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021569922.2 False 3543 mRNA 0.48 15 69141148 69162283
XM_021569929.2 True 3165 mRNA 0.49 15 69141148 69166663

Neighbor

gene id symbol gene type direction distance location
LOC110494669 arl2bp coding downstream 166 69138616 ~ 69140982 (-)
LOC110494649 LOC106560856 coding downstream 13113 69112267 ~ 69128035 (-)
aars1 aars coding downstream 29277 69096742 ~ 69111871 (-)
sf3b3 sf3b3 coding downstream 81750 69009850 ~ 69059398 (-)
il34 il-34 coding downstream 137249 68980410 ~ 69003899 (-)
cpne2 LOC106560852 coding upstream 12370 69179033 ~ 69205373 (-)
nlrc5 LOC106560850 coding upstream 40760 69207423 ~ 69229555 (-)
LOC110494745 LOC106560849 coding upstream 68993 69235656 ~ 69250282 (-)
herpud1 herp1 coding upstream 84624 69251287 ~ 69265605 (-)
slc12a3 LOC106560848 coding upstream 99742 69266405 ~ 69274547 (-)
G177244 NA non-coding downstream 23985 69116867 ~ 69117163 (-)
G177192 NA non-coding downstream 34930 69049020 ~ 69106218 (-)
G177154 NA non-coding downstream 161691 68978979 ~ 68979457 (-)
G176712 NA non-coding downstream 225865 68915008 ~ 68915283 (-)
G177272 NA non-coding upstream 28878 69195541 ~ 69195986 (-)
G177207 NA non-coding upstream 143848 69310511 ~ 69311709 (-)
G177315 NA non-coding upstream 152898 69319561 ~ 69319944 (-)
G177322 NA non-coding upstream 158887 69325550 ~ 69326260 (-)
G177323 NA non-coding upstream 159645 69326308 ~ 69326828 (-)
G174505 NA other downstream 2448298 66692408 ~ 66692850 (-)
G173696 LOC106560906 other downstream 2750382 66375226 ~ 66390766 (-)
G173675 NA other downstream 2802762 66335412 ~ 66338386 (-)
LOC110494122 LOC106560915 other downstream 2842834 66277821 ~ 66299637 (-)
G173431 NA other downstream 3218919 65921850 ~ 65922229 (-)
G177487 NA other upstream 424472 69591135 ~ 69591722 (-)
LOC110494902 LOC106560839 other upstream 526946 69648833 ~ 69767366 (-)
LOC110501848 NA other upstream 1393859 70552263 ~ 70642587 (-)
fam169b fam169b other upstream 1602495 70769140 ~ 70773282 (-)
G179215 NA other upstream 1738709 70905372 ~ 70906254 (-)

Expression


Co-expression Network