psme3ip1 (LOC106560853)


Basic Information

Item Value
gene id psme3ip1
gene name LOC106560853
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 69166795 ~ 69176697 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021570013.2
TAGATTTCTACAATTATTCAGGCCGATGCACAAGTGGGAACTATATTGTTTCTTCATAAACTATGCGGAACCTATTTACTGGGACACGTGGCTCCGTGGATTAGATGATTTCTTGACTTGGTGTCTGGTCTACTTCGAGTTGAGGCAAGTAAAGTGTGAGATGGCAGTGCCAGCGGCCGGGGGTGTCGACCTCAGTCGGAAATTTGTGTCAGAGACCGAGATCGAGGAGAAAAGGAAGCAAAGACAGGAAGAATGGGAAAAAGTTAGGCAGCCAGAGGACCCAGAGAAGGCTCCCGAGGAAGAGTATGATGGGCGTTCACTGTTTGAGCGGCTACAGGAGCAGAAGGACAAGAAGCAAGAGGAATACGATGAGCAGTTTAAATTCAAGAACATGGTCAAAGGCCTGGATGAGGATGAGTCTCACTTCTTGGATGAGGTCTCCAGGCAACAGAGCCTGGTGGAGAAGCAACGCAGAGACGAGGAGCTGCATGAACTAAAAGAATACAGAAGTGCTCTGAAAAAACTGGCATCTAGTGAGAGTCGGAAGGAGCCCGAGAAGAGGGCGGGTCCTAAAGCAGCAGAGGTCAAGACCAGTCACCTGTCCCAGGCACACCTGTTGGCTGGGGCGTTCAAGCGACGCAGCTCTTCACAGTCCTCAGACAATAACAAGAAACAGAAGGTTGAGGAGTCTGCAGCAGGGAATGGGGGCCGGACAGAGCAGGAGGCGGGCAGAGGTGTGGTTGAGCAGGGCTCCACAGTAAAGACCGGTGTTCTCCACCTTCCATCGGCCGCCGTGTGTGTGGGCATCCTGCCGGGCATGGGAGCCTACTCCGGTAGCAGCGACTCGGAGTCCAGCAGCGACAGCGAAGTTTAAATCCCTGGCAGCCTAACCTGATGACATCCCCCTGTGGCTGCAGCTCTGCTATTGGCCAAGGAAACAGTGACTGACAGCTGTGGATCAAGGACAAGACTGCTAGACTGTCACGTCACATTCATACCTTACCTTAGACAACATCAAGAAAGCGAGCCAGAGCTTAGTCTCAGACGCAATGTATGTGGAAATGCTTTTCCTTTTAGTGTTTTTTGTTTATGCGTCAGTGCAAATAATGCTGGATTTTAAtggatttctttctctccatGAAAATGTGGGTTTCATCATGGGATGATCAAGGCTTGGGTAGAAGAAAATATAACGTTTTTCTGTTTTCTTTGTTTATTTGGTGTAAAGAGTCAGCCTGGCCTcctagactagatgtaacatagtaaactaaaacctgcgacactcaaattagtatatgTTACATTTGATGTGGTTAAATAAGACAAACTAAAGGAGGGTGGATAAGTGGGTGTATAATGTGaaagtctagcaacccaaaggttgcctgttcgaatctcatcacggacaacttgagCGTTTTAGGTAATTTACAACTACTTTTTTTCTAATTCCTAACCTTAACGCCTAGCCTAGCtgatgttagccacctagctaacattaaccacatcaaattggaatttgtaacattgtacaaattgcaatttgtaacCTATCACagattgtaattcgtaacatatcatagatGGAGATGGATGATGgatatccacaaattaatacacgACCtaacatactaatttgagtgtcccggatgtttgtttactatgttatgtctaccccTGAGTACAGGTTGAAAGAGTTGGTGTATGTGAGTGCATGAATGAAGATAACTGGAACGAAATACAGTTTGAGTAAATTGGAA
>XM_021570021.2
CAATTATTCAGGCCGATGCACAAGTGGGAACTATATTGTTTCTTCATAAACTATGCGGAACCTATTTACTGGGACACGTGGCTCCGTGGATTAGATGATTTCTTGACTTGGTGTCTGGTCTACTTCGAGTTGAGGTGTGAGATGGCAGTGCCAGCGGCCGGGGGTGTCGACCTCAGTCGGAAATTTGTGTCAGAGACCGAGATCGAGGAGAAAAGGAAGCAAAGACAGGAAGAATGGGAAAAAGTTAGGCAGCCAGAGGACCCAGAGAAGGCTCCCGAGGAAGAGTATGATGGGCGTTCACTGTTTGAGCGGCTACAGGAGCAGAAGGACAAGAAGCAAGAGGAATACGATGAGCAGTTTAAATTCAAGAACATGGTCAAAGGCCTGGATGAGGATGAGTCTCACTTCTTGGATGAGGTCTCCAGGCAACAGAGCCTGGTGGAGAAGCAACGCAGAGACGAGGAGCTGCATGAACTAAAAGAATACAGAAGTGCTCTGAAAAAACTGGCATCTAGTGAGAGTCGGAAGGAGCCCGAGAAGAGGGCGGGTCCTAAAGCAGCAGAGGTCAAGACCAGTCACCTGTCCCAGGCACACCTGTTGGCTGGGGCGTTCAAGCGACGCAGCTCTTCACAGTCCTCAGACAATAACAAGAAACAGAAGGTTGAGGAGTCTGCAGCAGGGAATGGGGGCCGGACAGAGCAGGAGGCGGGCAGAGGTGTGGTTGAGCAGGGCTCCACAGTAAAGACCGGTGTTCTCCACCTTCCATCGGCCGCCGTGTGTGTGGGCATCCTGCCGGGCATGGGAGCCTACTCCGGTAGCAGCGACTCGGAGTCCAGCAGCGACAGCGAAGTTTAAATCCCTGGCAGCCTAACCTGATGACATCCCCCTGTGGCTGCAGCTCTGCTATTGGCCAAGGAAACAGTGACTGACAGCTGTGGATCAAGGACAAGACTGCTAGACTGTCACGTCACATTCATACCTTACCTTAGACAACATCAAGAAAGCGAGCCAGAGCTTAGTCTCAGACGCAATGTATGTGGAAATGCTTTTCCTTTTAGTGTTTTTTGTTTATGCGTCAGTGCAAATAATGCTGGATTTTAAtggatttctttctctccatGAAAATGTGGGTTTCATCATGGGATGATCAAGGCTTGGGTAGAAGAAAATATAACGTTTTTCTGTTTTCTTTGTTTATTTGGTGTAAAGAGTCAGCCTGGCCTcctagactagatgtaacatagtaaactaaaacctgcgacactcaaattagtatatgTTACATTTGATGTGGTTAAATAAGACAAACTAAAGGAGGGTGGATAAGTGGGTGTATAATGTGaaagtctagcaacccaaaggttgcctgttcgaatctcatcacggacaacttgagCGTTTTAGGTAATTTACAACTACTTTTTTTCTAATTCCTAACCTTAACGCCTAGCCTAGCtgatgttagccacctagctaacattaaccacatcaaattggaatttgtaacattgtacaaattgcaatttgtaacCTATCACagattgtaattcgtaacatatcatagatGGAGATGGATGATGgatatccacaaattaatacacgACCtaacatactaatttgagtgtcccggatgtttgtttactatgttatgtctaccccTGAGTACAGGTTGAAAGAGTTGGTGTATGTGAGTGCATGAATGAAGATAACTGGAACGAAATACAGTTTGAGTAAATTGGAA
>XM_036954294.1
TTACATTTGTAATCCAAAATATGATTTCTTGACTTGGTGTCTGGTCTACTTCGAGTTGAGGCAAGTAAAGTGTGAGATGGCAGTGCCAGCGGCCGGGGGTGTCGACCTCAGTCGGAAATTTGTGTCAGAGACCGAGATCGAGGAGAAAAGGAAGCAAAGACAGGAAGAATGGGAAAAAGTTAGGCAGCCAGAGGACCCAGAGAAGGCTCCCGAGGAAGAGTATGATGGGCGTTCACTGTTTGAGCGGCTACAGGAGCAGAAGGACAAGAAGCAAGAGGAATACGATGAGCAGTTTAAATTCAAGAACATGGTCAAAGGCCTGGATGAGGATGAGTCTCACTTCTTGGATGAGGTCTCCAGGCAACAGAGCCTGGTGGAGAAGCAACGCAGAGACGAGGAGCTGCATGAACTAAAAGAATACAGAAGTGCTCTGAAAAAACTGGCATCTAGTGAGAGTCGGAAGGAGCCCGAGAAGAGGGCGGGTCCTAAAGCAGCAGAGGTCAAGACCAGTCACCTGTCCCAGGCACACCTGTTGGCTGGGGCGTTCAAGCGACGCAGCTCTTCACAGTCCTCAGACAATAACAAGAAACAGAAGGTTGAGGAGTCTGCAGCAGGGAATGGGGGCCGGACAGAGCAGGAGGCGGGCAGAGGTGTGGTTGAGCAGGGCTCCACAGTAAAGACCGGTGTTCTCCACCTTCCATCGGCCGCCGTGTGTGTGGGCATCCTGCCGGGCATGGGAGCCTACTCCGGTAGCAGCGACTCGGAGTCCAGCAGCGACAGCGAAGCCTAACCTGATGACATCCCCCTGTGGCTGCAGCTCTGCTATTGGCCAAGGAAACAGTGACTGACAGCTGTGGATCAAGGACAAGACTGCTAGACTGTCACGTCACATTCATACCTTACCTTAGACAACATCAAGAAAGCGAGCCAGAGCTTAGTCTCAGACGCAATGTATGTGGAAATGCTTTTCCTTTTAGTGTTTTTTGTTTATGCGTCAGTGCAAATAATGCTGGATTTTAAtggatttctttctctccatGAAAATGTGGGTTTCATCATGGGATGATCAAGGCTTGGGTAGAAGAAAATATAACGTTTTTCTGTTTTCTTTGTTTATTTGGTGTAAAGAGTCAGCCTGGCCTcctagactagatgtaacatagtaaactaaaacctgcgacactcaaattagtatatgTTACATTTGATGTGGTTAAATAAGACAAACTAAAGGAGGGTGGATAAGTGGGTGTATAATGTGaaagtctagcaacccaaaggttgcctgttcgaatctcatcacggacaacttgagCGTTTTAGGTAATTTACAACTACTTTTTTTCTAATTCCTAACCTTAACGCCTAGCCTAGCtgatgttagccacctagctaacattaaccacatcaaattggaatttgtaacattgtacaaattgcaatttgtaacCTATCACagattgtaattcgtaacatatcatagatGGAGATGGATGATGgatatccacaaattaatacacgACCtaacatactaatttgagtgtcccggatgtttgtttactatgttatgtctaccccTGAGTACAGGTTGAAAGAGTTGGTGTATGTGAGTGCATGAATGAAGATAACTGGAACGAAATACAGTTTGAGTAAATTGGAA
>XM_036954288.1
TACATTTGTAATCCAAAATATGATTTCTTGACTTGGTGTCTGGTCTACTTCGAGTTGAGGCAAGTAAAGTGTGAGATGGCAGTGCCAGCGGCCGGGGGTGTCGACCTCAGTCGGAAATTTGTGTCAGAGACCGAGATCGAGGAGAAAAGGAAGCAAAGACAGGAAGAATGGGAAAAAGTTAGGCAGCCAGAGGACCCAGAGAAGGCTCCCGAGGAAGAGTATGATGGGCGTTCACTGTTTGAGCGGCTACAGGAGCAGAAGGACAAGAAGCAAGAGGAATACGATGAGCAGTTTAAATTCAAGAACATGGTCAAAGGCCTGGATGAGGATGAGTCTCACTTCTTGGATGAGGTCTCCAGGCAACAGAGCCTGGTGGAGAAGCAACGCAGAGACGAGGAGCTGCATGAACTAAAAGAATACAGAAGTGCTCTGAAAAAACTGGCATCTAGTGAGAGTCGGAAGGAGCCCGAGAAGAGGGCGGGTCCTAAAGCAGCAGAGGTCAAGACCAGTCACCTGTCCCAGGCACACCTGTTGGCTGGGGCGTTCAAGCGACGCAGCTCTTCACAGTCCTCAGACAATAACAAGAAACAGAAGGTTGAGGAGTCTGCAGCAGGGAATGGGGGCCGGACAGAGCAGGAGGCGGGCAGAGGTGTGGTTGAGCAGGGCTCCACAGTAAAGACCGGTGTTCTCCACCTTCCATCGGCCGCCGTGTGTGTGGGCATCCTGCCGGGCATGGGAGCCTACTCCGGTAGCAGCGACTCGGAGTCCAGCAGCGACAGCGAAGTTTAAATCCCTGGCAGCCTAACCTGATGACATCCCCCTGTGGCTGCAGCTCTGCTATTGGCCAAGGAAACAGTGACTGACAGCTGTGGATCAAGGACAAGACTGCTAGACTGTCACGTCACATTCATACCTTACCTTAGACAACATCAAGAAAGCGAGCCAGAGCTTAGTCTCAGACGCAATGTATGTGGAAATGCTTTTCCTTTTAGTGTTTTTTGTTTATGCGTCAGTGCAAATAATGCTGGATTTTAAtggatttctttctctccatGAAAATGTGGGTTTCATCATGGGATGATCAAGGCTTGGGTAGAAGAAAATATAACGTTTTTCTGTTTTCTTTGTTTATTTGGTGTAAAGAGTCAGCCTGGCCTcctagactagatgtaacatagtaaactaaaacctgcgacactcaaattagtatatgTTACATTTGATGTGGTTAAATAAGACAAACTAAAGGAGGGTGGATAAGTGGGTGTATAATGTGaaagtctagcaacccaaaggttgcctgttcgaatctcatcacggacaacttgagCGTTTTAGGTAATTTACAACTACTTTTTTTCTAATTCCTAACCTTAACGCCTAGCCTAGCtgatgttagccacctagctaacattaaccacatcaaattggaatttgtaacattgtacaaattgcaatttgtaacCTATCACagattgtaattcgtaacatatcatagatGGAGATGGATGATGgatatccacaaattaatacacgACCtaacatactaatttgagtgtcccggatgtttgtttactatgttatgtctaccccTGAGTACAGGTTGAAAGAGTTGGTGTATGTGAGTGCATGAATGAAGATAACTGGAACGAAATACAGTTTGAGTAAATTGGAA
>XM_021570031.2
TAGGACCCCCTGGGTggacattttgttttttgccctagtactacacagctgattcaaataactaaCTCAtcgtcaagctttgattattttaaccagctgtgtagtgctagggcaaaaaccaaaacatgcactgAGTTTGAGAAACCCAGATGATTTCTTGACTTGGTGTCTGGTCTACTTCGAGTTGAGGCAAGTAAAGTGTGAGATGGCAGTGCCAGCGGCCGGGGGTGTCGACCTCAGTCGGAAATTTGTGTCAGAGACCGAGATCGAGGAGAAAAGGAAGCAAAGACAGGAAGAATGGGAAAAAGTTAGGCAGCCAGAGGACCCAGAGAAGGCTCCCGAGGAAGAGTATGATGGGCGTTCACTGTTTGAGCGGCTACAGGAGCAGAAGGACAAGAAGCAAGAGGAATACGATGAGCAGTTTAAATTCAAGAACATGGTCAAAGGCCTGGATGAGGATGAGTCTCACTTCTTGGATGAGGTCTCCAGGCAACAGAGCCTGGTGGAGAAGCAACGCAGAGACGAGGAGCTGCATGAACTAAAAGAATACAGAAGTGCTCTGAAAAAACTGGCATCTAGTGAGAGTCGGAAGGAGCCCGAGAAGAGGGCGGGTCCTAAAGCAGCAGAGGTCAAGACCAGTCACCTGTCCCAGGCACACCTGTTGGCTGGGGCGTTCAAGCGACGCAGCTCTTCACAGTCCTCAGACAATAACAAGAAACAGAAGGTTGAGGAGTCTGCAGCAGGGAATGGGGGCCGGACAGAGCAGGAGGCGGGCAGAGGTGTGGTTGAGCAGGGCTCCACAGTAAAGACCGGTGTTCTCCACCTTCCATCGGCCGCCGTGTGTGTGGGCATCCTGCCGGGCATGGGAGCCTACTCCGGTAGCAGCGACTCGGAGTCCAGCAGCGACAGCGAAGTTTAAATCCCTGGCAGCCTAACCTGATGACATCCCCCTGTGGCTGCAGCTCTGCTATTGGCCAAGGAAACAGTGACTGACAGCTGTGGATCAAGGACAAGACTGCTAGACTGTCACGTCACATTCATACCTTACCTTAGACAACATCAAGAAAGCGAGCCAGAGCTTAGTCTCAGACGCAATGTATGTGGAAATGCTTTTCCTTTTAGTGTTTTTTGTTTATGCGTCAGTGCAAATAATGCTGGATTTTAAtggatttctttctctccatGAAAATGTGGGTTTCATCATGGGATGATCAAGGCTTGGGTAGAAGAAAATATAACGTTTTTCTGTTTTCTTTGTTTATTTGGTGTAAAGAGTCAGCCTGGCCTcctagactagatgtaacatagtaaactaaaacctgcgacactcaaattagtatatgTTACATTTGATGTGGTTAAATAAGACAAACTAAAGGAGGGTGGATAAGTGGGTGTATAATGTGaaagtctagcaacccaaaggttgcctgttcgaatctcatcacggacaacttgagCGTTTTAGGTAATTTACAACTACTTTTTTTCTAATTCCTAACCTTAACGCCTAGCCTAGCtgatgttagccacctagctaacattaaccacatcaaattggaatttgtaacattgtacaaattgcaatttgtaacCTATCACagattgtaattcgtaacatatcatagatGGAGATGGATGATGgatatccacaaattaatacacgACCtaacatactaatttgagtgtcccggatgtttgtttactatgttatgtctaccccTGAGTACAGGTTGAAAGAGTTGGTGTATGTGAGTGCATGAATGAAGATAACTGGAACGAAATACAGTTTGAGTAAATTGGAA

Function

NR:

description
protein FAM192A-like isoform X5

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021570013.2 False 1760 mRNA 0.46 9 69166795 69176697
XM_021570021.2 False 1741 mRNA 0.46 9 69166805 69176697
XM_036954294.1 False 1660 mRNA 0.46 9 69166936 69176697
XM_036954288.1 False 1675 mRNA 0.46 9 69166937 69176697
XM_021570031.2 True 1805 mRNA 0.46 9 69167940 69176697

Neighbor

gene id symbol gene type direction distance location
trnal-cag NA coding upstream 31930 69134783 ~ 69134865 (+)
exosc6 exosc6 coding upstream 52990 69112063 ~ 69113805 (+)
st3gal2 st3gal2 coding upstream 73720 69069631 ~ 69093075 (+)
LOC118941448 LOC107672167 coding upstream 198238 68963784 ~ 68968557 (+)
siah1 siah1 coding upstream 219689 68920701 ~ 68947106 (+)
LOC110494820 NA coding downstream 138871 69315568 ~ 69325990 (+)
b3gnt9 LOC106560847 coding downstream 149410 69326107 ~ 69332525 (+)
LOC110494892 LOC106560841 coding downstream 421900 69598438 ~ 69608770 (+)
LOC110494936 LOC106560837 coding downstream 650813 69827510 ~ 69834723 (+)
LOC110533850 NA coding downstream 735880 69912367 ~ 69913406 (+)
G176889 NA non-coding upstream 835 69165695 ~ 69165960 (+)
G176888 NA non-coding upstream 1478 69165008 ~ 69165317 (+)
G176863 LOC106560856 non-coding upstream 39961 69126180 ~ 69126834 (+)
G176861 NA non-coding upstream 41130 69124935 ~ 69125665 (+)
G176859 LOC106560856 non-coding upstream 44065 69121532 ~ 69122730 (+)
G176970 NA non-coding downstream 133832 69310529 ~ 69311710 (+)
G176987 NA non-coding downstream 168507 69345204 ~ 69346102 (+)
G177002 NA non-coding downstream 239460 69416157 ~ 69417984 (+)
G177111 NA non-coding downstream 348031 69524728 ~ 69525723 (+)
G176725 lonp2 other upstream 208909 68956263 ~ 68957886 (+)
G176612 LOC100846954 other upstream 305427 68860838 ~ 68861368 (+)
hsbp1b LOC106561110 other upstream 1678594 67486128 ~ 67488205 (+)
LOC110494472 utp4 other upstream 1926899 67232278 ~ 67239902 (+)
LOC110494451 zfpm1 other upstream 2194340 66900017 ~ 66995521 (+)
G177067 NA other downstream 279861 69456558 ~ 69457433 (+)
G177812 NA other downstream 930589 70107286 ~ 70113440 (+)
igf1ra igf1r other downstream 1618713 70794530 ~ 70905277 (+)
LOC110495604 LOC106573778 other downstream 2883020 72059717 ~ 72065199 (+)
LOC110533853 LOC106561194 other downstream 3076741 72250884 ~ 72253809 (+)

Expression


Co-expression Network