cpne2 (LOC106560852)


Basic Information

Item Value
gene id cpne2
gene name LOC106560852
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 69179033 ~ 69205373 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036954280.1
AATTATAAaggaagagaaaaggagaaatgACTGTTGGAAAAGTGGAAGGAATGAAGGATTGTAGGGGTTGAATAAAGTTATGAAGTAAACCACTTGAGAGGGTGAAATAATCATTAATAAATATCCTCTGACTGTTGATTGCTCTCAATGTTTTATCGATTGATGCTCGCCAAGTTCGCAATAACACACAGTGTTATCAATGTACAATGGAGAAACATCAATCCATGGAAGCCGTGGTGTCTTGAGGAGTGTGGATCTGTGTGTGCTCCGGGTGCCCTCTTGTTGCCAGGGAAAGACATGCCTGcctgggtactgttgtgttgaaGCAGGCTAAGTGTGATCGCTGCAGGCTTGGGCTGTCGGTCAACAGGGCAGGCTCCAACATGAAACCAGCAAAGCGGTTGCTGCAGTTACCATGGAAATTTGGACGGAAACAAAGGAGTCATGATGTTCTTGATGCGTGGAAAGAGAGTGGAAAGAGTCGTGAGGAATGGAACTTACAGGCAAACAGGGAAGGGACATGGAAAATACCCAGTGGGGTTTGAAAACGGGGAGCCTAAATGTAAAAAGTACCTCGGAGGATGTCTGCTGTTCCAGAGATTGGTCGAACAGAGACTGCGGTAAATAACCTGAATCCAGTGTTTGGGGTGAAATTTAAGGTGGACTACCATTTTGAGGAGGTTCAGAAGCTCAAGTTTTCCCTGTTTGATGAGGACAAGTGCAGCAGCCAGCTGTATGAGCATGACTTCCTGGGAGAGTACATCTGTACACTGGGGGTGATTGTGTCCAATAAGAAACTTCACCGGTCACTGACCTTGGCCAATGGCAAGCCAGCTGGGAAAGGAACCATCACAATAACTGCGTTGGAGCTGTCAGACAATAGAGTAATCACACTGTCCTTGTATGGGAGAAAGCTTGACAAGAAGGATTTCTTTGGTAAATCAGACCCTTACCTAGAGTTCCACAAGCAAGGAGATGATGGGAAATGGATGTTGGTCCACAGGACAGAGGTGATAAAGAACACTCTGGACCCGGTGTGGAAGCCCTTCACAGTACCACTCATCTCCCTCTGTGATGGGGACGTAGACAGGAGCATCAAGGTACTGTGCTATGATTACGACAACGACGGAAGTCATGACTTCATTGGAGAGTTTCAGACCACTGTCACCAAGATGAGTGAAGCCCAGAATTCACTGGAGGTCGAATTTGAATGCATTAATCCGAaaaaacagaagaagaaaaagagcTACAAAAACTCTGGAATCATCATTCTGAAGTCATGCAAGGTTGAAAGGGACTATACCTTCCTGGACTATATTTTAGGTGGATGCCAGATCATGTTCACTGTTGGCATTGACTTCACAGCATCTAATGGGAATCCTCGGGAGCCCTCCTCTCTTCACTACATCAATCCTCTGGGCAGCAACGAGTACCTGTCCGCCATCCTGGCTGTGGGCCAGATCATCCAGGACTATGACACTGACAAAATGTTTCCTGCTCTGGGATTTGGGGCTCAACTCCCTCCAGACTGGAAGGTGTCTCATGAATTTGCCATCAACTTTGACCCGACCAATCCATTCTGCCAAGGTGTGGAGGGGATTGCCCAGGCctactctgcctgcctgcctcataTCCGCTTCTACGGCCCAACCAACTTCTCCCCCATCATCACCCATGTGGCCCGCTTTGCCACCCAGGCCCTGCAACAGGAGACTGCTGCGCAATACTTCACTCTGCTGATCATCACAGATGGGGTGATCAGTGACATGGATGAGACCCGCCACGCCATTGTTCAGGCAGCCAAACTCCCCATGTCAATCATCATTATTGGAGTGGGCAATGCAGACTTTGCTGCCATGGAGTTTCTGGATGGGGACAGCAGCGTGTTACGCTCCTacacaggagaggaggcagtcAGAGACATCGTGCAGTTTGTTCCCTTCAGGGACTTCCGAAATGCTCCGAAGGAAACTTTAGCCAAATCAGTATTGGCTGAGCTGCCGCAACAGGTCACACAGTATTTCAAACAGAGGAACCTGTCGCCTAGCAACACAGCATTGGAGTGAAAGCCCAAGGCCTTGGTTAATCATGCATGTTGCAAATATCTACTCACTGTTTACAAAAAACAATGTGCatgaaaagtgttttttttttcatatgtatttatcagatttttttttacatcttaaAGCAAGACTTTGTGGAGGAGGAAAATGTGTCAAAGAACACTACTTTGCAGTCCCCTGAAAGGAAAGGGAATTTTAGAaatgtctatactgtatactGAATGTAAATTTATACAATATTCTATGTTTTGAAAAGGAAATGTTTATGAAAAGTTCTTATGTATCTTTTATGCATTGAATTGTAATTTGTTGTACTTGTACCTTGAAGGTGTTGTACTTGTACCTTGAAGGTGTTGTAATTGATTTTATAAAGTTCACCATGTATTTATGTTACCACTCAGGTAAATAAACTTACATAAATGTCA
>XM_021569993.2
AGCGTGTGATTGAGTCGGGTGGAGTTGCAATGCGCGACCACTTCAATTGCTCCACTACGCCACACGGCGAGAGACTGTCACAGACCAGAATGACCTCCCCTCGCTGCCAACCACAACAATTTGTATTCCCTTGATTATATGTTTTGGACATCATGAAAATAACGTCAATTTGTGCATAGAAAGAAAAGTGTTCAAGTTATCAAGAGGAAGCGTTCTTCAGAGAAGAGTATTAGTAAAAAATCACATTTACCAAGGCTGTGGGGGGGCTGACACTCCTGCGAGCATGGCCTACACGCTTGGCACGGGGCCTGACTCTGGGCCAGCCATGGGTCCCCAGAATTGCGTCACTAGGGTGGAGCTGTCCGTGTGCTGTGGCAACCTGCTGGACAGAGACGTGGCCTCCAAGTCTGACCCCTTCTTAGTGCTCTTCCACGAGGTGGACAGCAACTGGGTtgagATTGGTCGAACAGAGACTGCGGTAAATAACCTGAATCCAGTGTTTGGGGTGAAATTTAAGGTGGACTACCATTTTGAGGAGGTTCAGAAGCTCAAGTTTTCCCTGTTTGATGAGGACAAGTGCAGCAGCCAGCTGTATGAGCATGACTTCCTGGGAGAGTACATCTGTACACTGGGGGTGATTGTGTCCAATAAGAAACTTCACCGGTCACTGACCTTGGCCAATGGCAAGCCAGCTGGGAAAGGAACCATCACAATAACTGCGTTGGAGCTGTCAGACAATAGAGTAATCACACTGTCCTTGTATGGGAGAAAGCTTGACAAGAAGGATTTCTTTGGTAAATCAGACCCTTACCTAGAGTTCCACAAGCAAGGAGATGATGGGAAATGGATGTTGGTCCACAGGACAGAGGTGATAAAGAACACTCTGGACCCGGTGTGGAAGCCCTTCACAGTACCACTCATCTCCCTCTGTGATGGGGACGTAGACAGGAGCATCAAGGTACTGTGCTATGATTACGACAACGACGGAAGTCATGACTTCATTGGAGAGTTTCAGACCACTGTCACCAAGATGAGTGAAGCCCAGAATTCACTGGAGGTCGAATTTGAATGCATTAATCCGAaaaaacagaagaagaaaaagagcTACAAAAACTCTGGAATCATCATTCTGAAGTCATGCAAGGTTGAAAGGGACTATACCTTCCTGGACTATATTTTAGGTGGATGCCAGATCATGTTCACTGTTGGCATTGACTTCACAGCATCTAATGGGAATCCTCGGGAGCCCTCCTCTCTTCACTACATCAATCCTCTGGGCAGCAACGAGTACCTGTCCGCCATCCTGGCTGTGGGCCAGATCATCCAGGACTATGACACTGACAAAATGTTTCCTGCTCTGGGATTTGGGGCTCAACTCCCTCCAGACTGGAAGGTGTCTCATGAATTTGCCATCAACTTTGACCCGACCAATCCATTCTGCCAAGGTGTGGAGGGGATTGCCCAGGCctactctgcctgcctgcctcataTCCGCTTCTACGGCCCAACCAACTTCTCCCCCATCATCACCCATGTGGCCCGCTTTGCCACCCAGGCCCTGCAACAGGAGACTGCTGCGCAATACTTCACTCTGCTGATCATCACAGATGGGGTGATCAGTGACATGGATGAGACCCGCCACGCCATTGTTCAGGCAGCCAAACTCCCCATGTCAATCATCATTATTGGAGTGGGCAATGCAGACTTTGCTGCCATGGAGTTTCTGGATGGGGACAGCAGCGTGTTACGCTCCTacacaggagaggaggcagtcAGAGACATCGTGCAGTTTGTTCCCTTCAGGGACTTCCGAAATGCTCCGAAGGAAACTTTAGCCAAATCAGTATTGGCTGAGCTGCCGCAACAGGTCACACAGTATTTCAAACAGAGGAACCTGTCGCCTAGCAACACAGCATTGGAGTGAAAGCCCAAGGCCTTGGTTAATCATGCATGTTGCAAATATCTACTCACTGTTTACAAAAAACAATGTGCatgaaaagtgttttttttttcatatgtatttatcagatttttttttacatcttaaAGCAAGACTTTGTGGAGGAGGAAAATGTGTCAAAGAACACTACTTTGCAGTCCCCTGAAAGGAAAGGGAATTTTAGAaatgtctatactgtatactGAATGTAAATTTATACAATATTCTATGTTTTGAAAAGGAAATGTTTATGAAAAGTTCTTATGTATCTTTTATGCATTGAATTGTAATTTGTTGTACTTGTACCTTGAAGGTGTTGTACTTGTACCTTGAAGGTGTTGTAATTGATTTTATAAAGTTCACCATGTATTTATGTTACCACTCAGGTAAATAAACTTACATAAATGTCA

Function

NR:

description
copine-2 isoform X1

GO: NA

KEGG:

id description
K24524 CPNE1_2_3; copine 1/2/3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036954280.1 False 2491 mRNA 0.45 15 69179033 69199760
XM_021569993.2 True 2349 mRNA 0.46 16 69179033 69205373

Neighbor

gene id symbol gene type direction distance location
rspry1 LOC106560854 coding downstream 12370 69141148 ~ 69166663 (-)
LOC110494669 arl2bp coding downstream 38051 69138616 ~ 69140982 (-)
LOC110494649 LOC106560856 coding downstream 50998 69112267 ~ 69128035 (-)
aars1 aars coding downstream 67162 69096742 ~ 69111871 (-)
sf3b3 sf3b3 coding downstream 119635 69009850 ~ 69059398 (-)
nlrc5 LOC106560850 coding upstream 2050 69207423 ~ 69229555 (-)
LOC110494745 LOC106560849 coding upstream 30283 69235656 ~ 69250282 (-)
herpud1 herp1 coding upstream 45914 69251287 ~ 69265605 (-)
slc12a3 LOC106560848 coding upstream 61032 69266405 ~ 69274547 (-)
nup93 nup93 coding upstream 71605 69276978 ~ 69308904 (-)
G177244 NA non-coding downstream 61870 69116867 ~ 69117163 (-)
G177192 NA non-coding downstream 72815 69049020 ~ 69106218 (-)
G177154 NA non-coding downstream 199576 68978979 ~ 68979457 (-)
G176712 NA non-coding downstream 263750 68915008 ~ 68915283 (-)
G177207 NA non-coding upstream 105138 69310511 ~ 69311709 (-)
G177315 NA non-coding upstream 114188 69319561 ~ 69319944 (-)
G177322 NA non-coding upstream 120177 69325550 ~ 69326260 (-)
G177323 NA non-coding upstream 120935 69326308 ~ 69326828 (-)
G177333 NA non-coding upstream 159739 69365112 ~ 69365852 (-)
G174505 NA other downstream 2486183 66692408 ~ 66692850 (-)
G173696 LOC106560906 other downstream 2788267 66375226 ~ 66390766 (-)
G173675 NA other downstream 2840647 66335412 ~ 66338386 (-)
LOC110494122 LOC106560915 other downstream 2880719 66277821 ~ 66299637 (-)
G173431 NA other downstream 3256804 65921850 ~ 65922229 (-)
G177487 NA other upstream 385762 69591135 ~ 69591722 (-)
LOC110494902 LOC106560839 other upstream 488236 69648833 ~ 69767366 (-)
LOC110501848 NA other upstream 1355149 70552263 ~ 70642587 (-)
fam169b fam169b other upstream 1563785 70769140 ~ 70773282 (-)
G179215 NA other upstream 1699999 70905372 ~ 70906254 (-)

Expression


Co-expression Network