herpud1 (herp1)


Basic Information

Item Value
gene id herpud1
gene name herp1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 69251287 ~ 69265605 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021570086.2
GAGCGCGTGCAATTCAGACTGCTCCCGGAGCAGGAGCCTCCACGTCTGATCACGAGCCTTGGTTATCCAATCACAGCAAGCCACCGGGTGTTTCCAAACAACATCCCCTTTCACAGAACTACAGGCTGTGTAGCTAGCTACTTACTTCCTCATCATCTCAACTAAAAAGTTGTCGGCTGAATAAATTAATTCCTACTTTGTTTATCTGACATTTTAGCTAGATGATTAGATGCTGTAGTTACTTACTCCATTTATATTACAACTAAGAGGTCGCGTTGGAGAGGTCACAAGAAAACAAAAATGGACAACAGTGGTTTTCCTAACGTTAGACAAAAGACAATCACTCTTGTGATAAAAACACCGAATCAAGCCCACGGGGATCAGACGATTGAAGGAGTTGACACGGACTGGACAGTGAAAGAGTTGAAGACTCATTTATCGAGGGTGTACCCAAATAACCCGACTGAAAGTGATCAGAGACTTATTTACTCTGGCAAGCTGCTCCCAGACCAACTGCATGTCAGAGATATTTTCagaaagACGGACCTAACACCCACTGTGCACCTGGTGTGTGCAGTCAGAACTCAGCCCAGAGGTCCACTAGGAGCAAGACCAAAGGTCAGAGAGCCAGAACCACAACCGTCTGCCATGCCAACCAGACAGAACCCAGAGGGTGCCACCCCAGCCCCATCTGTGCCCACTGAACCAGAGCTGAGACAACGCAGGTACACTTCCACCTCTCCCGCCCCACCCGCATGGCCTGGCACTACAACGCCAGGGGCAGCAGAGATAACCAACCCAACCTTCCCCACCTACTCCCTCTACAGCCCTCAACAGCTGCTCTGGCTGCAGCACATGTATGCTCGCCAATATTACATGCAGTACCATGCAGCCTATGCAGCAGCAGCTTCTGCCCCCTTTGCCCCAGCCACAGGCCCATCCCTGCCTGCTGCTCCCCACCAAGCCGCTGTCCCAGCACCCCTGCCCAATCAGGCCCCCATTGACAACctgccagccaatcagaatgcgcAGGACGGCGCCTTTATCAACCCGGGAGCAGCCAATCAGAACCTGCGGATGAATGCCCAAGGCGGGCCTGtgatggaggatgaggaggaaatGGATCGTGATTGGCTGGACTGGGTGTACACAGCTGCCCGCCTGGGAGTGTTTCTCAGTATTGTCTACTTCTACTCCAGCCTGAGCCGCTTCGCCCTTGTCATGAGCAGCCTGCTCCTTATGTACCTgcacACAGCAGGCTGGTTCCCCTTCAGACAAAGGCCCCTGGTCAGAGGTCCAAACAACCAGGTCCCTGAGGTCATCCAGAACCAGGACAGGAACCCAGTGCCACCGGTGGAGGTCCCTGCAGGAGAAGAGGGGGCCGAGGCGGAGGTTGGACCTGATGAACCACACCCCCTGACTGCAGTACCTGTGCCTCAACACAGGGTGTCCATCGTTTGGAGTGCCTGGATCTTCTTCAAAGCCTTCTTTGCCTCCCTCATCCCAGAGGCCCCGGGAGTGGCTAACTGAATAATCGACTTTTCCAGCAGGGGGCACACTGGAACTGAAGTTACCCTCAGTATCAGACCTGCCTCTCTGTCACGGGAAGTCCTCTCTCTGGCCTTCTGGATGGATGCCTGGATGGATGCCTGGACATTTTGTGAGAAATCATGAATGATTAAAAGCGtcaatgcatacaaagccctggCTGTAGTCTGTTAAGGGTGTGTGTTTAGGGATATGATGATTCATTCGGCGCTTCCTGCCTTATGATAGTGACCAAAtggttgtatatacagtacagtacatacacctCTCTCTGCCAAATGGTTGTAAATGCTGTAAATGTTTATTGgaacaaaacatttaaatattattGTATTGTCTGTACACAGCACTTTACAAAACTTATCTTATTATTAGGGCTGGGACAATACTAATATCGCAATATTGTTTCCATTGCAAAAATGTAAACACGAAGCAGATCAAACTCTTTGCCCCTTTAAAAACcttctgtatgtaaaatattgtctgCTATatcttggaaaataaatacatgtgatacTGGATGAGTAGTAatgtacactcagtggccagtttattagggaACACCCATCGCCCACCGGGTCTGACCccttttgcctccagaacagcctgaattctcagggtcatggattctacaaggtgtggcGTTCAAACATTACTCAATTGGTATCAATGGACCTGATGTGTGCTAGGGAAACCaatccccacaccattacaccaccgccaccagcctgtaccgttgacacgaGGCAGAATATCAACGTAGTCAGATTCATGTTGCTAAATGCCAGATTTTGACTTTGCCATCAGCATGACTCAACAGGAACCAAGATTTGTCGGACcgggcaatgtttttccactcctcaattgttcaatgttggtgatcgcgtgcccactggagccgcttgttgtttttagctgataggagtggaaacCGGATGGGCTGCAAAatcccatccgtgacaaggaccgagttgtgcgttccgaaaTGCCGTTCTGTACACTACTTGTACTGTGCCATTATTTTCCAGTTTGTGGCCTGCCTcgtagcttgcacgattcttgccattctcctacgacctctcatcaacgagctgttttcgccaACAGACCTGCccctgactggatgttttttttcCCGCACGGTTCTCAGTTAACCGAAGATGACTCCGACGATTATACCATGCTTAAAGTCACTTACGTTACTTGTtatgcccattctaacgttcaatcgaacagtaactgaatgcctcgatgcccgtctgcctgctttataaagcaagccacggccacgtgactcactgtctgtaggagcaaacAATTTGTGAACGggttggtgtacctaataaactggccagtgATTGTATGTTTCCAACATACATGGGGCTGTTTTCCGAAATAGTTAAATccactttgtgttttgtttccttgccacgatactaacgagtatcgcAATACTGGTATTGTGCCGGCCATACTTATTATGCAAACTTGCTTTAATCTGGGTTAAATTATGAGATGCTTATAGTGCTGTATGGTAAAATAGTTTGTATTGCTCTTGCTCAGAGATGGAAGTGCTATACAGGGTTGTGCATGAGTATTGAATGTTTCTCTGGTTGTCTCAGATGTGAAATGGAAGGCAGTGTTAACATAGTGTGGCTTTAATTCATTAGACTGGTTAAAGATCTTCTGAAAGTTGAATTATGTTAAACACGGGAATATGCAGTTGTGTGGGGCTTAGGCCAGACTGTTTTTGCAATTAAAATGGAATCATGCATAGTGACCTCGCTCCCTTGTTACAcaatgagaaaaatatatattgtgaTTCCTTTTGGAATGCCTTTAACTGTACACATACACTAAGTGTAATTCCCCCCCTAGTACGTTCTAGTGTGatttatctttttgttttttattttggtAAAACAGCTTTTTAATGGATGCTACTGTATCAAGAATATTTTGTGGAGACTTGCAATAAATTTACTTATTTAAAAGGATT
>XM_021570093.2
AGAGCGCGTGCAATTCAGACTGCTCCCGGAGCAGGAGCCTCCACGTCTGATCACGAGCCTTGGTTATCCAATCACAGCAAGCCACCGGGTGTTTCCAAACAACATCCCCTTTCACAGAACTACAGGCTGTGTAGCTAGCTACTTACTTCCTCATCATCTCAACTAAAAAGTTGTCGGCTGAATAAATTAATTCCTACTTTGTTTATCTGACATTTTAGCTAGATGATTAGATGCTGTAGTTACTTACTCCATTTATATTACAACTAAGAGGTCGCGTTGGAGAGGTCACAAGAAAACAAAAATGGACAACAGTGGTTTTCCTAACGTTAGACAAAAGACAATCACTCTTGTGATAAAAACACCGAATCAAGCCCACGGGGATCAGACGATTGAAGGAGTTGACACGGACTGGACAGTGAAAGAGTTGAAGACTCATTTATCGAGGGTGTACCCAAATAACCCGACTGAAAGTGATCAGAGACTTATTTACTCTGGCAAGCTGCTCCCAGACCAACTGCATGTCAGAGATATTTTCagaaagACGGACCTAACACCCACTGTGCACCTGGTGTGTGCAGTCAGAACTCAGCCCAGAGGTCCACTAGGAGCAAGACCAAAGGTCAGAGAGCCAGAACCACAACCGTCTGCCATGCCAACCAGACAGAACCCAGAGGGTGCCACCCCAGCCCCATCTGTGCCCACTGAACCAGAGCTGAGACAACGCAGGCCAGGGGCAGCAGAGATAACCAACCCAACCTTCCCCACCTACTCCCTCTACAGCCCTCAACAGCTGCTCTGGCTGCAGCACATGTATGCTCGCCAATATTACATGCAGTACCATGCAGCCTATGCAGCAGCAGCTTCTGCCCCCTTTGCCCCAGCCACAGGCCCATCCCTGCCTGCTGCTCCCCACCAAGCCGCTGTCCCAGCACCCCTGCCCAATCAGGCCCCCATTGACAACctgccagccaatcagaatgcgcAGGACGGCGCCTTTATCAACCCGGGAGCAGCCAATCAGAACCTGCGGATGAATGCCCAAGGCGGGCCTGtgatggaggatgaggaggaaatGGATCGTGATTGGCTGGACTGGGTGTACACAGCTGCCCGCCTGGGAGTGTTTCTCAGTATTGTCTACTTCTACTCCAGCCTGAGCCGCTTCGCCCTTGTCATGAGCAGCCTGCTCCTTATGTACCTgcacACAGCAGGCTGGTTCCCCTTCAGACAAAGGCCCCTGGTCAGAGGTCCAAACAACCAGGTCCCTGAGGTCATCCAGAACCAGGACAGGAACCCAGTGCCACCGGTGGAGGTCCCTGCAGGAGAAGAGGGGGCCGAGGCGGAGGTTGGACCTGATGAACCACACCCCCTGACTGCAGTACCTGTGCCTCAACACAGGGTGTCCATCGTTTGGAGTGCCTGGATCTTCTTCAAAGCCTTCTTTGCCTCCCTCATCCCAGAGGCCCCGGGAGTGGCTAACTGAATAATCGACTTTTCCAGCAGGGGGCACACTGGAACTGAAGTTACCCTCAGTATCAGACCTGCCTCTCTGTCACGGGAAGTCCTCTCTCTGGCCTTCTGGATGGATGCCTGGATGGATGCCTGGACATTTTGTGAGAAATCATGAATGATTAAAAGCGtcaatgcatacaaagccctggCTGTAGTCTGTTAAGGGTGTGTGTTTAGGGATATGATGATTCATTCGGCGCTTCCTGCCTTATGATAGTGACCAAAtggttgtatatacagtacagtacatacacctCTCTCTGCCAAATGGTTGTAAATGCTGTAAATGTTTATTGgaacaaaacatttaaatattattGTATTGTCTGTACACAGCACTTTACAAAACTTATCTTATTATTAGGGCTGGGACAATACTAATATCGCAATATTGTTTCCATTGCAAAAATGTAAACACGAAGCAGATCAAACTCTTTGCCCCTTTAAAAACcttctgtatgtaaaatattgtctgCTATatcttggaaaataaatacatgtgatacTGGATGAGTAGTAatgtacactcagtggccagtttattagggaACACCCATCGCCCACCGGGTCTGACCccttttgcctccagaacagcctgaattctcagggtcatggattctacaaggtgtggcGTTCAAACATTACTCAATTGGTATCAATGGACCTGATGTGTGCTAGGGAAACCaatccccacaccattacaccaccgccaccagcctgtaccgttgacacgaGGCAGAATATCAACGTAGTCAGATTCATGTTGCTAAATGCCAGATTTTGACTTTGCCATCAGCATGACTCAACAGGAACCAAGATTTGTCGGACcgggcaatgtttttccactcctcaattgttcaatgttggtgatcgcgtgcccactggagccgcttgttgtttttagctgataggagtggaaacCGGATGGGCTGCAAAatcccatccgtgacaaggaccgagttgtgcgttccgaaaTGCCGTTCTGTACACTACTTGTACTGTGCCATTATTTTCCAGTTTGTGGCCTGCCTcgtagcttgcacgattcttgccattctcctacgacctctcatcaacgagctgttttcgccaACAGACCTGCccctgactggatgttttttttcCCGCACGGTTCTCAGTTAACCGAAGATGACTCCGACGATTATACCATGCTTAAAGTCACTTACGTTACTTGTtatgcccattctaacgttcaatcgaacagtaactgaatgcctcgatgcccgtctgcctgctttataaagcaagccacggccacgtgactcactgtctgtaggagcaaacAATTTGTGAACGggttggtgtacctaataaactggccagtgATTGTATGTTTCCAACATACATGGGGCTGTTTTCCGAAATAGTTAAATccactttgtgttttgtttccttgccacgatactaacgagtatcgcAATACTGGTATTGTGCCGGCCATACTTATTATGCAAACTTGCTTTAATCTGGGTTAAATTATGAGATGCTTATAGTGCTGTATGGTAAAATAGTTTGTATTGCTCTTGCTCAGAGATGGAAGTGCTATACAGGGTTGTGCATGAGTATTGAATGTTTCTCTGGTTGTCTCAGATGTGAAATGGAAGGCAGTGTTAACATAGTGTGGCTTTAATTCATTAGACTGGTTAAAGATCTTCTGAAAGTTGAATTATGTTAAACACGGGAATATGCAGTTGTGTGGGGCTTAGGCCAGACTGTTTTTGCAATTAAAATGGAATCATGCATAGTGACCTCGCTCCCTTGTTACAcaatgagaaaaatatatattgtgaTTCCTTTTGGAATGCCTTTAACTGTACACATACACTAAGTGTAATTCCCCCCCTAGTACGTTCTAGTGTGatttatctttttgttttttattttggtAAAACAGCTTTTTAATGGATGCTACTGTATCAAGAATATTTTGTGGAGACTTGCAATAAATTTACTTATTTAAAAGGATT

Function

NR:

description
homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein isoform X2

GO: NA

KEGG:

id description
K14027 HERPUD1, HERP; homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021570086.2 False 3547 mRNA 0.47 8 69251287 69265604
XM_021570093.2 True 3500 mRNA 0.47 8 69251287 69265605

Neighbor

gene id symbol gene type direction distance location
LOC110494745 LOC106560849 coding downstream 1005 69235656 ~ 69250282 (-)
nlrc5 LOC106560850 coding downstream 21732 69207423 ~ 69229555 (-)
cpne2 LOC106560852 coding downstream 45914 69179033 ~ 69205373 (-)
rspry1 LOC106560854 coding downstream 84624 69141148 ~ 69166663 (-)
LOC110494669 arl2bp coding downstream 110305 69138616 ~ 69140982 (-)
slc12a3 LOC106560848 coding upstream 800 69266405 ~ 69274547 (-)
nup93 nup93 coding upstream 11373 69276978 ~ 69308904 (-)
LOC110494832 LOC106560845 coding upstream 65418 69331023 ~ 69342066 (-)
LOC110494854 LOC106560844 coding upstream 88057 69353662 ~ 69389693 (-)
gnao1a LOC106560843 coding upstream 146164 69411769 ~ 69549683 (-)
G177272 NA non-coding downstream 55301 69195541 ~ 69195986 (-)
G177244 NA non-coding downstream 134124 69116867 ~ 69117163 (-)
LOC110494649 LOC106560856 non-coding downstream 137296 69112267 ~ 69128035 (-)
G177192 NA non-coding downstream 145069 69049020 ~ 69106218 (-)
G177154 NA non-coding downstream 271830 68978979 ~ 68979457 (-)
G177207 NA non-coding upstream 44906 69310511 ~ 69311709 (-)
G177315 NA non-coding upstream 53956 69319561 ~ 69319944 (-)
G177322 NA non-coding upstream 59945 69325550 ~ 69326260 (-)
G177323 NA non-coding upstream 60703 69326308 ~ 69326828 (-)
G177333 NA non-coding upstream 99507 69365112 ~ 69365852 (-)
G174505 NA other downstream 2558437 66692408 ~ 66692850 (-)
G173696 LOC106560906 other downstream 2860521 66375226 ~ 66390766 (-)
G173675 NA other downstream 2912901 66335412 ~ 66338386 (-)
LOC110494122 LOC106560915 other downstream 2952973 66277821 ~ 66299637 (-)
G173431 NA other downstream 3329058 65921850 ~ 65922229 (-)
G177487 NA other upstream 325530 69591135 ~ 69591722 (-)
LOC110494902 LOC106560839 other upstream 428004 69648833 ~ 69767366 (-)
LOC110501848 NA other upstream 1294917 70552263 ~ 70642587 (-)
fam169b fam169b other upstream 1503553 70769140 ~ 70773282 (-)
G179215 NA other upstream 1639767 70905372 ~ 70906254 (-)

Expression


Co-expression Network