XLOC_002068 (prnpb)


Basic Information

Item Value
gene id XLOC_002068
gene name prnpb
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 20628698 ~ 20632779 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00004008
TACAGTCAGCGTGATCTCTGTTGAGCAGAGAGTGCTGCGGGAGAGACGCTTCTTCAACCTTTTTATGGACCAAAATGGGGGAGTTATGCAAACTTCTAGCCATCGTTTTGGTTTTGATGGCAGTGTTACATTATACATCAGGAGGAAAGAAAGGCACTGTAAGCAAGACTGTTCCCAAGAAGCCACCCGAAAAAACATCACAAGGGACCAAGACCCAACCTAACTATCCCAGACAACCCTCCAATCCTGGTGCAGGAAGTAACCCAGGCTACCCTAACCAGCAGTATCCTGGGAGAGGTGGATCTAGTCCATCAGGGTATCCCAACCAGAATCCTGGGGCAGGCAGCTATCCAGCTGGAGGCAGCTATCCGTATCCTGGAAGAGGTGGCTCCAGCCCTGGAGGGTATCCCAACCAAAATCCTGGAGCAGGTTCTTATCCATCTGGAGGCAGCTATCCCTCAGCTGGTGGAAATCCCAATCAGTATCCTGGGAGAGGTGGCTACAACCCTGGAGGGTATCCCAACCAGAATCCTGGAGCAGGTTCTTATCCAGCAGGAGGCAGCTATCCTTCTGCTGGTGGAAATCCCAATCAGTATCCTGGAAGAGGTGGCACCCGCCCCGCAGGGTATCCCAACCAAAATCCTGGAGCAGGTTCTTATCCAGCAGGAGGCAGCTATCCTTCTGCTGGTGAAAATCCCAATCAGTATCCTGGGAGAGGTGGCTCCAACCCTGGAGGGTATCCCAACCAGAATCCTGGAGCAGGTTCTTATCCAGCAGGAGGCAGCTATCCTTCAGCTGGTGGAAATCCCAATCAGTATCCTGGAAGAGGCGGCTCCAGCCCCGCAGGGAATCCCAACCAGAATCCTGGAGCAGGTACCTATGCAGGTGGTGGCTACCCCAATCAGTATCCTGGGGGAGGGGGTTACTCTAACCAGAACCCTGGTAGAAGTGGATACAGCCCTGGTGGGTATCCAGGAGCTGGATCTTACCCAGTGAGAAATGCAGGGCAGCCTGGAGTTTACCCAGGAGCACACCCTTCTGCTGGAGGAGGATATCCCAACTGGAACCCCAACAATCAGATTCTCAGTCCACGATATGGAGGCCCATTTGGAGGTGGTGGGTTTGGGACGGGTGGCTCCCCTTTCTCACAATCAGTGAAAAACATGGGCTACAACCCTTCTGCAAAATCCAAAGGCTTCGGGAAAAAGGCAGTGGTGGCTGCAGGAGTTGGTGCAATGGCAGGAATGGCTATAGGCTATGGAATAGGAAACTTTCAACGCCCCAACTTCCAGTTCAGAAGCCCACAGGAGGAACGCTACTACAACAACCATATGTACCAACGTCAGGACACACGTTTTAAAGATGGAGGTAACAAGAAAAAACCCAGTCACACCGCAGGAACCGACAACACATCAAAGCTACCAGCTCAAGCTCAGTCATACGACAATTTCATGAAGACATGCATGAAGCGAAATAATCTTTTAAGAGACCAAGACTCAAAAGAATCTGCAGGTAACAGCAATATTCAAAGAGAGGAACCAATGAGTGATTTTCCAGGTTTGAATGAAGAATCCTCACAGAAAGGTGGGCCAGAGAAGAATGACACCACATCTAATACAACAACCCGTGATTATCCAAAGGCTGCTGAGATTCATAAGAATGAGGATGAGGAAACAGTGAGCATCATGCAGATCGGCTATCCGGCGCTTATTGAGCAGATGAAATCTCGAAAGTGTGTTGAGCTGTACATTGTTTACTCAGAGAGTCAGAGAGATGATAGAATGGAAAAAAGAGAAGGGAAAATTCCCAGAAGTTCCAATAACCATAATGGACACAGCATCTCCGAAGTGCTTCTGTTGCTCACTGCTTCCACTATGCTTTTTAGTACCACTTAATGgaactataataataaacatataatgTATTAAGTAATGGAATTGCATTTCCTTTCCACTCTATAGGAATCCAAATAACAGCACTTATATTGCCATTTGCATTTTTATGAATGAATTTTGTTATGATAAATCATCATCTTACAATAATATTGTTACTTCTACAactgtataataaaaatgtaaataccttAATACAATTTTTATGTGTTCACTTcgtttatgcatttatattttcaAGGATAATATTTAATCACATTTTTGCcttatacatgaataaataaaatactaaaagatTCGTTTATTTTGATTACTTATCAGTTACTTTCATTCATACCTTTCGGCAAAATCTCTGCAGTTCGTTTGCACAGGTACAGTACATATAAACAAGAGAacaaatatgttttcaatgtttattcattttcttttcttctcttgtcgccacagtggaatgaacctccaacttatccagcatatgttttacacaacagatgccctttcagccac
>TCONS_00004009
TTAGGACCAAAATGGGGGAGTTATGCAAACTTCTAGCCATCGTTTTGGTTTTGATGGCAGTGTTACATTATACATCAGGAGGAAAGAAAGGCACTGTAAGCAAGACTGTTCCCAAGAAGCCACCCGAAAAAACATCACAAGGGACCAAGACCCAACCTAACTATCCCAGACAACCCTCCAATCCTGGTGCAGGAAGTAACCCAGGCTACCCTAACCAGCAGTATCCTGGGAGAGGTGGATCTAGTCCATCAGGGTATCCCAACCAGAATCCTGGGGCAGGCAGCTATCCAGCTGGAGGCAGCTATCCGTATCCTGGAAGAGGTGGCTCCAGCCCTGGAGGGTATCCCAACCAAAATCCTGGAGCAGGTTCTTATCCATCTGGAGGCAGCTATCCCTCAGCTGGTGGAAATCCCAATCAGTATCCTGGGAGAGGTGGCTACAACCCTGGAGGGTATCCCAACCAGAATCCTGGAGCAGGTTCTTATCCAGCAGGAGGCAGCTATCCTTCTGCTGGTGGAAATCCCAATCAGTATCCTGGAAGAGGTGGCACCCGCCCCGCAGGGTATCCCAACCAAAATCCTGGAGCAGGTTCTTATCCAGCAGGAGGCAGCTATCCTTCTGCTGGTGAAAATCCCAATCAGTATCCTGGGAGAGGTGGCTCCAACCCTGGAGGGTATCCCAACCAGAATCCTGGAGCAGGTTCTTATCCAGCAGGAGGCAGCTATCCTTCAGCTGGTGGAAATCCCAATCAGTATCCTGGAAGAGGCGGCTCCAGCCCCGCAGGGAATCCCAACCAGAATCCTGGAGCAGGTACCTATGCAGGTGGTGGCTACCCCAATCAGTATCCTGGGGGAGGGGGTTACTCTAACCAGAACCCTGGTAGAAGTGGATACAGCCCTGGTGGGTATCCAGGAGCTGGATCTTACCCAGTGAGAAATGCAGGGCAGCCTGGAGTTTACCCAGGAGCACACCCTTCTGCTGGAGGAGGATATCCCAACTGGAACCCCAACAATCAGATTCTCAGTCCACGATATGGAGGCCCATTTGGAGGTGGTGGGTTTGGGACGGGTGGCTCCCCTTTCTCACAATCAGTGAAAAACATGGGCTACAACCCTTCTGCAAAATCCAAAGGCTTCGGGAAAAAGGCAGTGGTGGCTGCAGGAGTTGGTGCAATGGCAGGAATGGCTATAGGCTATGGAATAGGAAACTTTCAACGCCCCAACTTCCAGTTCAGAAGCCCACAGGAGGAACGCTACTACAACAACCATATGTACCAACGTCAGGACACACGTTTTAAAGATGGAGGTAACAAGAAAAAACCCAGTCACACCGCAGGAACCGACAACACATCAAAGCTACCAGCTCAAGCTCAGTCATACGACAATTTCATGAAGACATGCATGAAGCGAAATAATCTTTTAAGAGACCAAGACTCAAAAGAATCTGCAGGTAACAGCAATATTCAAAGAGAGGAACCAATGAGTGATTTTCCAGGTTTGAATGAAGAATCCTCACAGAAAGGTGGGCCAGAGAAGAATGACACCACATCTAATACAACAACCCGTGATTATCCAAAGGCTGCTGAGATTCATAAGAATGAGGATGAGGAAACAGTGAGCATCATGCAGATCGGCTATCCGGCGCTTATTGAGCAGATGAAATCTCGAAAGTGTGTTGAGCTGTACATTGTTTACTCAGAGAGTCAGAGAGATGATAGAATGGAAAAAAGAGAAGGGAAAATTCCCAGAAGTTCCAATAACCATAATGGACACAGCATCTCCGAAGTGCTTCTGTTGCTCACTGCTTCCACTATGCTTTTTAGTACCACTTAATGgaactataataataaacatataatgTATTAAGTAATGGAATTGCATTTCCTTTCCACTCTATAGGAATCCAAATAACAGCACTTATATTGCCATTTGCATTTTTATGAATGAATTTTGTTATGATAAATCATCATCTTACAATAATATTGTTACTTCTACAactgtataataaaaatgtaaataccttAATACAATTTTTATGTGTTCACTTcgtttatgcatttatattttcaAGGATAATATTTAATCACATTTTTGCcttatacatgaataaataaaatactaaaagatTCGTTT

Function

symbol description
prnpb Predicted to enable calcium ion binding activity. Acts upstream of or within several processes, including calcium-independent cell-cell adhesion via plasma membrane cell-adhesion molecules; epiboly involved in gastrulation with mouth forming second; and homophilic cell adhesion via plasma membrane adhesion molecules. Located in cell surface and plasma membrane. Is expressed in cranial ganglion; eye; floor plate; and forebrain.

GO:

id name namespace
GO:0006909 phagocytosis biological_process
GO:0051260 protein homooligomerization biological_process
GO:2000047 regulation of cell-cell adhesion mediated by cadherin biological_process
GO:0034334 adherens junction maintenance biological_process
GO:0055113 epiboly involved in gastrulation with mouth forming second biological_process
GO:0032506 cytokinetic process biological_process
GO:0007417 central nervous system development biological_process
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0061097 regulation of protein tyrosine kinase activity biological_process
GO:0016338 calcium-independent cell-cell adhesion via plasma membrane cell-adhesion molecules biological_process
GO:0005886 plasma membrane cellular_component
GO:0009986 cell surface cellular_component
GO:0016020 membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041221-2 Predicted to enable calcium ion binding activity. Acts upstream of or within several processes, including calcium-independent cell-cell adhesion via plasma membrane cell-adhesion molecules; epiboly involved in gastrulation with mouth forming second; and homophilic cell adhesion via plasma membrane adhesion molecules. Located in cell surface and plasma membrane. Is expressed in cranial ganglion; eye; floor plate; and forebrain.

Ensembl:

ensembl_id ENSDARG00000044048

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00004008 False 2399 mRNA 0.45 2 20628698 20632779
TCONS_00004009 True 2132 mRNA 0.46 1 20630444 20632575

Neighbor

gene id symbol gene type direction distance location
XLOC_002067 letm2 coding upstream 1903 20589969 ~ 20626795 (+)
XLOC_002066 NA coding upstream 126520 20501776 ~ 20502178 (+)
XLOC_002065 NA coding upstream 176068 20448467 ~ 20452630 (+)
XLOC_002064 r3hcc1 coding upstream 226537 20392083 ~ 20402161 (+)
XLOC_002063 NA coding upstream 247385 20377088 ~ 20381313 (+)
XLOC_002069 NA coding downstream 10556 20643335 ~ 20645459 (+)
XLOC_002070 NA coding downstream 32237 20665016 ~ 20667861 (+)
XLOC_002071 BX548043.1 coding downstream 51257 20684036 ~ 20684150 (+)
XLOC_002072 NA coding downstream 98835 20731614 ~ 20738676 (+)
XLOC_002073 NA coding downstream 471142 21103921 ~ 21106710 (+)
XLOC_002058 CABZ01059623.1 non-coding upstream 903104 19602334 ~ 19725594 (+)
XLOC_002056 CABZ01059627.3 non-coding upstream 1038965 19583289 ~ 19589733 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000304_08895917_08897236 NA coding CI01000304 null 8895603 ~ 8897532 (+)