XLOC_020680 (dram2b)


Basic Information

Item Value
gene id XLOC_020680
gene name dram2b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 856869 ~ 866196 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00040887
AGAGCGGAAGAAAACGCTGATAGTTGATGTGTGACAATAACGGAAGAAAAAACAGCGATAAATTTGAGCAATAAACGAATAAAAGGAATATATAAAGCATTTAAGCATGCAACAGAACCCTTAACGAGAGATGCAAAGTCATTCAAAAGGGATTTAAAATGTTTCCGTTCGGACTGAGGGATGATTGACAGCAGAAGTGAAACAGGAACTCACCCAGAATGCTCCCATGATGCTCTGATCTGGTGACCTGAAGCAGCTCGGCTAGTTTCCGCTAGTGTTCATGATGTGGTGGTTTCAGGAGGGTCTGTGTGTGCTGCCCGTGGCTCTGGTGGTCTGGACCGCCGCCACCTTCATCTTCGCCTACATCACGGCTGTTGTTCTGAGACACGTCGACCCGCTGGTGCCCTACATCAGTGACACGGGGACGGTCGCGCCGGAGAGATGCGTGTTTGGAGTCATGCTCAATGTGTCGGCGTTCCTAGGTGTCGCCACTATGTATGTGCGCTATAAGCAGCTCCAGGCTCTGGCGGATGTGGAAGACACTCGTTTAAACCGGCTCAATGTGGTCGGATTTGTTTTTGGCTGCTGCAGCTCATTCGGCATGTGCGTCGTTGCTAACTTCCAGAAAACCACTCTGTTCTCGATGCACCTGGTGGGCGCCATTTTGACGTTCGGCATCGGCGCGCTCTACGTTTTCATCCAGACGGCTCTGTCGTACCTCATGCAGCCTCACATCCACAGCAAAACCATGTTCTGGACGCGGCTGAGTGTTGGTATCTGGACCCTCAGCAGCATCATCAGCATGTTTGTGTCGTCTGTGATCATGTACAGCACTCTACCTGGGGTGGAGGTCAACAAGAAGCTGCACTGGACGCCTGGAGAACCTGGTTTCACGGCTCATATCGTGAGCACCATCTCTGAATGGTCCCTCGCACTGTCCTTCATCAGCTTCTTCCTCACCTACATACGAGACTTTAAGAAGATCAACCTGCGTGCCTCAGCCGAGCTTCAGAGCAACCATCTGTACGAATCGCAGCATTACCGGCCCGTTTCTGCACGAGGACCGACTGAGACGTCCCCGCTGCTGACAGGGAGCATCTGATGACCACAGCTGGACAGAAAAACTGAGATTCTCCAGCAAAACACAGGGTTAAACAGAAGCACTGGACTGACTGTGGAGAAGAGCTCAAACTTCATAACAACATTCATACAACCTTTACACAATGCTTGAAGTCATGTTATTAATATGTTTGCTCCAGTCGTTTGACTGCAGCGGTTTGACTGTTCTTGATGTATGATATGCTAAAGTTTGTTGCTGGAAACTACCCATATGATTAATGTTGTAGAAATCTATATTGACAGACTGTGATTCTCCAGCAGAGGGCAGCAACACACAGGGTTCAAGACAGAAACACTGCACAGAGTACACACAGTGGAGAAACTCTCAAACTTCATACTTTTAAACGACATTCATACAACTTTTACACAATGCCTGAAATTATattatgatacataataaatgctGAAAGTGTTGCTGGAAACTGCAGATatatgtggtaacactttacaatacggttgtattatttgttattaatgtatttacaatCAATACATGTGTTACTGTTTATTCATCATTGTTAACATTAATGAAAGTATAGCTACTCATGTTAACTGGCAATGCATTGACTAATGTTAACAGGTATGAGTTTGGATTTCaggtaaatgttgaattatgattaataaatgctgtagaagTATTGTTCATACTTGGTTCAGGTTAGTGAATACATCACTTAatgaaatcttattgtaaagtgtgaccaaattctCTGGTTTTAGAACCGCATTCATTATGGCACTGAAACTGTATAATAGTGGTCGACTTGTACAACATTTAATATAACATTTCATACCTCTTGAATAAAATGAAAAGCtgttcatattttaaaacaaa

Function

symbol description
dram2b Predicted to be involved in photoreceptor cell maintenance and regulation of autophagy. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in lysosome. Human ortholog(s) of this gene implicated in cone-rod dystrophy. Orthologous to human DRAM2 (DNA damage regulated autophagy modulator 2).

GO:

id name namespace
GO:0010506 regulation of autophagy biological_process
GO:0005764 lysosome cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040625-141 Predicted to be involved in photoreceptor cell maintenance and regulation of autophagy. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in lysosome. Human ortholog(s) of this gene implicated in cone-rod dystrophy. Orthologous to human DRAM2 (DNA damage regulated autophagy modulator 2).

Ensembl:

ensembl_id ENSDARG00000044241

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00040887 True 1954 mRNA 0.44 8 856869 866196

Neighbor

gene id symbol gene type direction distance location
XLOC_020679 cry4 coding downstream 22763 819656 ~ 834106 (-)
XLOC_020678 TMEM263 coding downstream 39390 812848 ~ 817479 (-)
XLOC_020677 rbbp5 coding downstream 72759 770001 ~ 784110 (-)
XLOC_020676 NA coding downstream 95983 739300 ~ 760886 (-)
XLOC_020675 NA coding downstream 121625 733244 ~ 735244 (-)
XLOC_020681 cept1b coding upstream 485 866681 ~ 881725 (-)
XLOC_020682 KCTD20 coding upstream 31935 898131 ~ 910926 (-)
XLOC_020683 cacna1sa coding upstream 46254 912450 ~ 968484 (-)
XLOC_020684 NA coding upstream 152149 1018345 ~ 1023531 (-)
XLOC_020685 si:ch1073-15f12.3 coding upstream 207217 1073413 ~ 1079773 (-)
XLOC_020673 NA non-coding downstream 151962 700213 ~ 704907 (-)
XLOC_020672 NA non-coding downstream 159365 659917 ~ 697504 (-)
XLOC_020664 NA non-coding downstream 460969 392619 ~ 395900 (-)
XLOC_020686 NA non-coding upstream 290234 1156430 ~ 1168291 (-)
XLOC_020687 NA non-coding upstream 315888 1182084 ~ 1182479 (-)
XLOC_020689 CU570769.4 non-coding upstream 363710 1229906 ~ 1230022 (-)
XLOC_020690 NA non-coding upstream 394754 1260950 ~ 1269440 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000186_00235234_00237816 DRAM2, DRAM2B coding CI01000186 null 234897 ~ 238121 (+)