LOC110494820


Basic Information

Item Value
gene id LOC110494820
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 69315568 ~ 69325990 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110494820
TATAGCACTCCAGCTCAAGTAATTCAATCTTCTCTCTTCTATCAGGTGTTCATCCATAACCCTCACATGCGTGGCCAGTGGCAGACAGCCTACCATCTGAGCCAGAGTGCCCAGGACTCCGACATCTCTTTGCTCAACATCAACCAGGCATTGAGCTGCTTGACAGCTGGTACTCGACAACCCAACACCACTGGAGACACGCTCCTCGTGGGCACCCAGACAAACCTGGCCTATGATGTACACGAAATTGCTGACATCTTCAACAGAGAGGTGACAGATGGGGACAATGCCATCACTTTAGGGAAATTGGCGAACATTAAGTCCCCCCTCACCATCATCGGAGGAAACTGTGCCTTACAAGGATTTGACTGTGAGGGGAACGACCAGTTCTGGACAGACACGGGGGATAATGTCCGGTCATTGGTTCTCTGTGTTTTTACTGGCAATTGAAAAAATGAGCTTCTTGTCAGATCAGAGGACTTTGACATTAGGgtatacagatgcacaattgaAGAGGATGTGTGCTGATTGTTCTCTCTTTGTATCTTTCAGAAGGTTACCTCCCTCTGTCATAAGCATGGCAGCAGGTTTGCTTATGCACTTGCCAATGGAACAGTTGGTGTTTATGACCACACTGCCCACTACTGGATAATCAAGTCTAAGAACCATGCAATGAGCATCCATGTATCTGACCTTAATGCTGACGGTGTTGTAGAACTCATCAAGGGCTGGTCCAATGGAAAGGTAAACCACCTTGATGTGCCCCTTGAAGAAGTCATCTTTGATGTCATCTTCAAAGACAGCTTCTCGTCCTCTGTGGCTGGAGTGGTGGAGAGGGACTATCGTATGGATGGACAGATCCAGCTAATCTGTACCTCTGTGGAGGGAGAAGTGCGTGGCTACCTGCCTGCCAGTAAGGAGATGAAGGGGAACCTGATGGACTCCAGTGTGGAGCAGGATCTGATCCGAGAGCTGAGCCAACTCAGGCAGAACCTGCTACTGGAACTATGCAACTATAAGGAGAATGCCAAGGCTGTCCCAGGGACTTCAGAAGGTGATACCCAGATGGGGGTGATACCAGCCAATACCCAGCTCTAGACTGCCCTCTGTCAGAGCTGCCACGGAGTCCCAGAGGGCACACAGAGCTCAGCATCTCCACGCCCAATGAGACCATCATTAGAGCCGTGCTGATTTTCGCTGAGGGAATTTTCGAGAGTGAAAGTCATGTGGTACACCCCAGTGCCCAGAATTGGTCTGGTTGTATCCGTGTTCCCATCATTCCTCCTTGTGGATTTACACATCAAAGTTTTTGTTTGCGGCAAGAGCAGCGTTCAGTTCCACGTCTTTAAGAATATGCGTCAGCTGCGTCAGCTGCCTGGCTTCTCCATGTATGATCTTAATGTTGATCCTGAGGTATCTCAACCTACTGGGAAAGTCACCTTCGCCAGGCCACAGAGAGTCGTCATGTGGCTGAACCAGATCATCCTTCTACCGGAGGGCATTGATACCCCAGTTGAGACGTTCAACTTTCTGCGCCATGGGCAGAGGAGGAACATGAAGAAGCTCTACATTGAGCTCTATGACCTGAAGAGAGATCTGATCAATGAGTACAAGATCGGATCCAACAATCACAATGCTCTTAAGTCTGTCAACCAAGCCCATTCAGAGGACAGGGAGACTGAGAGTGGGTAAGCCGAATAATCAGGTTATCACAGCCTGCCGGGACGCTATCAAAAACAACAATGTCAATGCCCTGTTCAAGATCATGAGAGCAGGCACAGCCTCTTCCTGATGGTACCCCCTGTGTGAGAAGGGGGAGCCAGTCCGGGGGGAGCCAGGAGAGGAGGATTTATAAGTGTGAAGAAAGTCTAGTTCACTAGTGGCAAGGCCTGAAGAAAAGCACCCCAAGATGTCATATTGGTCAGCAGTGATGTTTTAGAAGAGTCAGTGGGTGGGAGTAACTGTCATGTTGTAAATGTGGTTTTCTAGCCAAATAAATCTATACTCCTTTAATGTTAAATGGGACCAGCATAGTGTGATACACGTTTACATTTTGTAGGTTGTAAATAGACAGGGAACTTTGTGTGTGCAGAAAATGTAACTCTAAATGAAATGGTCTTTTAA

Function

NR:

description
PREDICTED: Bardet-Biedl syndrome 2 protein isoform X1

GO:

id name namespace
GO:0046907 intracellular transport biological_process
GO:0032402 melanosome transport biological_process
GO:0070121 Kupffer's vesicle development biological_process
GO:0007368 determination of left/right symmetry biological_process
GO:0051877 pigment granule aggregation in cell center biological_process
GO:0042995 cell projection cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:0016020 membrane cellular_component
GO:0043226 organelle cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110494820 True 2124 mRNA 0.48 14 69315568 69325990

Neighbor

gene id symbol gene type direction distance location
psme3ip1 LOC106560853 coding upstream 138871 69166795 ~ 69176697 (+)
trnal-cag NA coding upstream 180703 69134783 ~ 69134865 (+)
exosc6 exosc6 coding upstream 201763 69112063 ~ 69113805 (+)
st3gal2 st3gal2 coding upstream 222493 69069631 ~ 69093075 (+)
LOC118941448 LOC107672167 coding upstream 347011 68963784 ~ 68968557 (+)
b3gnt9 LOC106560847 coding downstream 117 69326107 ~ 69332525 (+)
LOC110494892 LOC106560841 coding downstream 272607 69598438 ~ 69608770 (+)
LOC110494936 LOC106560837 coding downstream 501520 69827510 ~ 69834723 (+)
LOC110533850 NA coding downstream 586587 69912367 ~ 69913406 (+)
LOC110494959 cssa10h7orf43 coding downstream 588233 69914223 ~ 69923578 (+)
G176970 NA non-coding upstream 3858 69310529 ~ 69311710 (+)
G176889 NA non-coding upstream 149608 69165695 ~ 69165960 (+)
G176888 NA non-coding upstream 150251 69165008 ~ 69165317 (+)
G176863 LOC106560856 non-coding upstream 188734 69126180 ~ 69126834 (+)
G176861 NA non-coding upstream 189903 69124935 ~ 69125665 (+)
G176987 NA non-coding downstream 19214 69345204 ~ 69346102 (+)
G177002 NA non-coding downstream 90167 69416157 ~ 69417984 (+)
G177111 NA non-coding downstream 198738 69524728 ~ 69525723 (+)
G177442 NA non-coding downstream 232680 69558670 ~ 69559143 (+)
G176725 lonp2 other upstream 357682 68956263 ~ 68957886 (+)
G176612 LOC100846954 other upstream 454200 68860838 ~ 68861368 (+)
hsbp1b LOC106561110 other upstream 1827367 67486128 ~ 67488205 (+)
LOC110494472 utp4 other upstream 2075672 67232278 ~ 67239902 (+)
LOC110494451 zfpm1 other upstream 2343113 66900017 ~ 66995521 (+)
G177067 NA other downstream 130568 69456558 ~ 69457433 (+)
G177812 NA other downstream 781296 70107286 ~ 70113440 (+)
igf1ra igf1r other downstream 1469420 70794530 ~ 70905277 (+)
LOC110495604 LOC106573778 other downstream 2733727 72059717 ~ 72065199 (+)
LOC110533853 LOC106561194 other downstream 2927448 72250884 ~ 72253809 (+)

Expression


Co-expression Network