LOC110494854 (LOC106560844)


Basic Information

Item Value
gene id LOC110494854
gene name LOC106560844
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 69353662 ~ 69389693 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021570198.2
TGTACAGTCATAAATCGGACTCCGAGGAGCCAGGAAGTATGCAGCGCGACAGATAAAGTCGAGAGAGCGGGCGTTTGTTGTCAGTGGACGGGGATCACACGCTTCAGGGTGAGAGGGAATTATAGCCGAGTGCGAAATTGAGCCTAATCCATTGCAGTGGCAGAGACTGACCACTCAGTAGTTTAGATTTGAAAGCGGGGAGAGATCACGACCCTGCTTACAATTAGGTAAATATTACGTTAGCACATTGCTACAAAACAAGACGGAAGAGAATAGAAGCGGGATTGCTGTTATTTCACGGCAAAGGTTTGTCTTGCTCACAAAACAATTAGAATCAAGGAACATTTCTCAGCAAAGCTTCAAGATGCCTCGGGTGGTCCCGGATCAAAGGAGCAAGTTTGAAAACGAAGAATTCTTCAGAAAACTCAGTCGGGAGTGCGAGATCAAATACACAGGTTTCCGAGACAGACCGCACGAGGAGAGGCAAGCCAGGTTTCAGAACGCTTCTAGAGACGGTCGCTCAGAAATAGCTTTTGTGGCGACGGGCACCAACCTCTCGCTGCAGTTCTTCCCAGCCAACTTGCACGGGGAGCAGAGGCAGACACCCACACGAGATTATGTGGACTTTGACCGGGAGACGGGAAAGGTGTACCTGAAGGCCCCTATGATCCTGAATGGAGTGTGTGTGACCTGGAAGGGCTGCATAGACCTGCAGCGCTTGGATGGGATGGGCTGTCTGGAGTTCGATGAGGAGAGAGCACAGCATGAGGATGCCCTGGCGCTAGCATCCTTTGAGGAGTCGCGTAGGAGGACCCGGGACTTTGAGGACAGAGACCGCTCGCACCGAGAGGACCTGGAGgACCCTGTGGCATCAAAAATCTGGGACTGATGGCATTCAAGGACCAGGCCCAGGCGACAGCAGGACCTCAGCCCTGGCACCGACATGGGCAACAACGCTGATGATCACAAGATGCGCTAGAGGCCAGAGAGACGCAGGGGAGTGGGGTCAGGGTGACCTGTCCATCGTACTAGGCCAGTCTCACACCCTGTCACCAAGCTGTTAACTGGAGAGACCAAAGTCCACATTGCTAGGGATttgggggtgggtgggggtggggcCCTTTTTAATTTTAAGAAGGGACTGGGTGAGGTGGGTGTCCATTTTTAAGTGTGGTGTAAGAGGATCGACCCAAACCTCCTTGTCTTCGGGGGGGGGTTTGCACTATCTGATACATTCAGTTTAGTACCCACATTGCCTTCTGTATGCATGGAGCACCTGCCTACCTATGTTTTCTTTTGTCCCTCTATGCAAGCTATTTCGGCAGCACTTTCTTTTACAATGCTTTATAAATAGGAAATTACTGGGTGATTAAATGGAACACATTTGTTATTAAATAATTACATATTCTTCCTAAA
>XM_021570186.2
GTGTACAGTCATAAATCGGACTCCGAGGAGCCAGGAAGTATGCAGCGCGACAGATAAAGTCGAGAGAGCGGGCGTTTGTTGTCAGTGGACGGGGATCACACGCTTCAGGGTGAGAGGGAATTATAGCCGAGTGCGAAATTGAGCCTAATCCATTGCAGTGGCAGAGACTGACCACTCAGTAGTTTAGATTTGAAAGCGGGGAGAGATCACGACCCTGCTTACAATTAGGTAAATATTACGTTAGCACATTGCTACAAAACAAGACGGAAGAGAATAGAAGCGGGATTGCTGTTATTTCACGGCAAAGGTTTGTCTTGCTCACAAAACAATTAGAATCAAGGAACATTTCTCAGCAAAGCTTCAAGATGCCTCGGGTGGTCCCGGATCAAAGGAGCAAGTTTGAAAACGAAGAATTCTTCAGAAAACTCAGTCGGGAGTGCGAGATCAAATACACAGGTTTCCGAGACAGACCGCACGAGGAGAGGCAAGCCAGGTTTCAGAACGCTTCTAGAGACGGTCGCTCAGAAATAGCTTTTGTGGCGACGGGCACCAACCTCTCGCTGCAGTTCTTCCCAGCCAACTTGCACGGGGAGCAGAGGCAGACACCCACACGAGATTATGTGGACTTTGACCGGGAGACGGGAAAGGTGTACCTGAAGGCCCCTATGATCCTGAATGGAGTGTGTGTGACCTGGAAGGGCTGCATAGACCTGCAGCGCTTGGATGGGATGGGCTGTCTGGAGTTCGATGAGGAGAGAGCACAGCATGAGGATGCCCTGGCGCTAGCATCCTTTGAGGAGTCGCGTAGGAGGACCCGGGACTTTGAGGACAGAGACCGCTCGCACCGAGAGGACCTGGAGCCCAGGCGACAGCAGGACCTCAGCCCTGGCACCGACATGGGCAACAACGCTGATGATCACAAGATGCGCTAGAGGCCAGAGAGACGCAGGGGAGTGGGGTCAGGGTGACCTGTCCATCGTACTAGGCCAGTCTCACACCCTGTCACCAAGCTGTTAACTGGAGAGACCAAAGTCCACATTGCTAGGGATttgggggtgggtgggggtggggcCCTTTTTAATTTTAAGAAGGGACTGGGTGAGGTGGGTGTCCATTTTTAAGTGTGGTGTAAGAGGATCGACCCAAACCTCCTTGTCTTCGGGGGGGGGTTTGCACTATCTGATACATTCAGTTTAGTACCCACATTGCCTTCTGTATGCATGGAGCACCTGCCTACCTATGTTTTCTTTTGTCCCTCTATGCAAGCTATTTCGGCAGCACTTTCTTTTACAATGCTTTATAAATAGGAAATTACTGGGTGATTAAATGGAACACATTTGTTATTAAATAATTACATATTCTTCCTAAA
>XM_021570205.2
GTGTACAGTCATAAATCGGACTCCGAGGAGCCAGGAAGTATGCAGCGCGACAGATAAAGTCGAGAGAGCGGGCGTTTGTTGTCAGTGGACGGGGATCACACGCTTCAGGGTGAGAGGGAATTATAGCCGAGTGCGAAATTGAGCCTAATCCATTGCAGTGGCAGAGACTGACCACTCAGTAGTTTAGATTTGAAAGCGGGGAGAGATCACGACCCTGCTTACAATTAGGTAAATATTACGTTAGCACATTGCTACAAAACAAGACGGAAGAGAATAGAAGCGGGATTGCTGTTATTTCACGGCAAAGGTTTGTCTTGCTCACAAAACAATTAGAATCAAGGAACATTTCTCAGCAAAGCTTCAAGATGCCTCGGGTGGTCCCGGATCAAAGGAGCAAGTTTGAAAACGAAGAATTCTTCAGAAAACTCAGTCGGGAGTGCGAGATCAAATACACAGGTTTCCGAGACAGACCGCACGAGGAGAGGCAAGCCAGGTTTCAGAACGCTTCTAGAGACGGTCGCTCAGAAATAGCTTTTGTGGCGACGGGCACCAACCTCTCGCTGCAGTTCTTCCCAGCCAACTTGCACGGGGAGCAGAGGCAGACACCCACACGAGATTATGTGGACTTTGACCGGGAGACGGGAAAGGTGTACCTGAAGGCCCCTATGATCCTGAATGGAGTGTGTGTGACCTGGAAGGGCTGCATAGACCTGCAGCGCTTGGATGGGATGGGCTGTCTGGAGTTCGATGAGGAGAGAGCACAGCATGAGGATGCCCTGGCGCTAGCATCCTTTGAGGAGTCGCGTAGGAGGACCCGGGACTTTGAGGACAGAGACCGCTCGCACCGAGAGGACCTGGAGgACCCTGTGGCATCAAAAATCTGGGACTGATGGCATTCAAGGACCAGGTGGGACGTGTGCAGGTCAGGACATCCTACCAGGGTATAAGCTGGAAGACTGGAAGACagaccccccacacacactttcCCCCAGTGCCTAATGGAGAAcagacctccacacacacaccacccacccacaccctGCTGCCGGAGGAGTACGCTGCAAGGCCTGCTGGGACATATCTGCCACAGCTTGGCAGCacatgatgagg

Function

NR:

description
core-binding factor subunit beta isoform X4

GO:

id name namespace
GO:0048769 sarcomerogenesis biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0045214 sarcomere organization biological_process
GO:0060047 heart contraction biological_process
GO:0016513 core-binding factor complex cellular_component
GO:0030018 Z disc cellular_component
GO:0003677 DNA binding molecular_function
GO:0003713 transcription coactivator activity molecular_function
GO:0046982 protein heterodimerization activity molecular_function
GO:0001076 obsolete transcription factor activity, RNA polymerase II transcription factor binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021570198.2 False 1416 mRNA 0.50 7 69353662 69389692
XM_021570186.2 False 1369 mRNA 0.50 6 69353662 69389693
XM_021570205.2 True 1110 mRNA 0.53 7 69356478 69389693

Neighbor

gene id symbol gene type direction distance location
LOC110494832 LOC106560845 coding downstream 11596 69331023 ~ 69342066 (-)
nup93 nup93 coding downstream 44758 69276978 ~ 69308904 (-)
slc12a3 LOC106560848 coding downstream 79115 69266405 ~ 69274547 (-)
herpud1 herp1 coding downstream 88057 69251287 ~ 69265605 (-)
LOC110494745 LOC106560849 coding downstream 103380 69235656 ~ 69250282 (-)
gnao1a LOC106560843 coding upstream 22076 69411769 ~ 69549683 (-)
LOC110492400 NA coding upstream 188476 69578169 ~ 69584892 (-)
LOC110494902 LOC106560839 coding upstream 259140 69648833 ~ 69767366 (-)
LOC110494926 LOC106560838 coding upstream 386234 69775927 ~ 69827479 (-)
LOC110501833 LOC106560836 coding upstream 444939 69834632 ~ 69870691 (-)
G177323 NA non-coding downstream 26834 69326308 ~ 69326828 (-)
G177322 NA non-coding downstream 27402 69325550 ~ 69326260 (-)
G177315 NA non-coding downstream 33718 69319561 ~ 69319944 (-)
G177207 NA non-coding downstream 41953 69310511 ~ 69311709 (-)
G177272 NA non-coding downstream 157676 69195541 ~ 69195986 (-)
G177353 NA non-coding upstream 50154 69439847 ~ 69458295 (-)
G177428 NA non-coding upstream 152682 69542375 ~ 69542883 (-)
G177486 NA non-coding upstream 200974 69590667 ~ 69591051 (-)
G177834 NA non-coding upstream 240160 69629853 ~ 69638176 (-)
G177835 NA non-coding upstream 241241 69630934 ~ 69638886 (-)
G174505 NA other downstream 2660812 66692408 ~ 66692850 (-)
G173696 LOC106560906 other downstream 2962896 66375226 ~ 66390766 (-)
G173675 NA other downstream 3015276 66335412 ~ 66338386 (-)
LOC110494122 LOC106560915 other downstream 3055348 66277821 ~ 66299637 (-)
G173431 NA other downstream 3431433 65921850 ~ 65922229 (-)
G177487 NA other upstream 201442 69591135 ~ 69591722 (-)
LOC110501848 NA other upstream 1170829 70552263 ~ 70642587 (-)
fam169b fam169b other upstream 1379465 70769140 ~ 70773282 (-)
G179215 NA other upstream 1515679 70905372 ~ 70906254 (-)

Expression


Co-expression Network