LOC110494926 (LOC106560838)


Basic Information

Item Value
gene id LOC110494926
gene name LOC106560838
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 69775927 ~ 69827479 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021570267.2
AGTCAACAGCTACCAGACAATTACTCATTGAGCTCCTCCCTGTACCTAGTCACCAAAGCCACACGTTTTCGTAGTGTAGAAACTTGTTTAGTATTTGTTCGTTAATTTAGTTGTAGGTATAATAAGCTATACAGCTAGAAACAGTTGATAGATTTCTCAATTATTTTGTAACCGCGTGATACTAGCTACAGCCAGGGTTTGTCAGACAACCGGTGCTTTGCCTTTGTAACTTGCTGACGTTACTGGAGACAGCTATCTAGCCAACTATCCATACATTCCCCGCTGTGTTTACTATTGGTAGAACGTGTAGGCTCTTTCTGGAGGGGAAATTATGAATTACTCAGATTATGATTCCGATGGCTATTCTTCAAATGCAGATCAAGACTATGTCCCATCTGATGACAACCTTAGTGAAGATGACATGAATGAATGTGTGAAAGAGGATGGTCTGGAAGGGGATGACCAGCATGGCCAACAGTCTGATAATGTCaccaagaagaaaaagaagaaaggCCAACACATTGGCATGAGgaaaagaaagaaaggaggactGAAGTTAGAGGAGACACTGCATGATTGCAGTGTGGAGGATCAGAAAGTagagcagggggaggagagagagttttCTACTCCCAGGCCCAagaaggaggaggatgaagagaaaaagaagaagaaggcaGATGATTTGTGGGCCAGTTTTCTGAGTGATGTTGGTCACAAATCCAAGCCACCTACCCCAGTGCCGCAGGCTACTACTAAACAGCAGGCTGCACCCACAGACAGTCCGAAGAAGCCCATTTCGGCTCCATCAGAACCTCAACTACCAGAGCCTAAAGAGCCCTCTAAAGTCACCATCACTAAGGTGTTTGACTTTGCTGGGGAAGAGGTCCGGGTATCCAAAGAGGTTGATGCTGACTCCAAGGAGGCCAAGAGCTTTCTGAAGGCCAAGGAGGAGACACCATATGTACAGACTGTACCCAGAAGATTTGAGCCCCCCTCCCTTGCCCCTGGACTGAGTGTGAAGAGGCCTGTAGGGATGGGTAGCATCCTGAACCGCCTCGGGGGGAAGAAACAGAAGATGAGCACGTTAGAGAAGTCTAAGATGGACTGGAACGCCTTCAAAGACGAGGAAGGCATCGGGGACGAGCTGGCCATCCACAACCGCGGCAAAGAGGGGTATGTGGAAAGAAAGAATTTTCTGGAGAGAGTTGACCACCGGCAGTTTGAGCAGGAAAAGAAAGTGCGTCTCGGCAACATCATGAAACGATGACAAGGAATAATGTTACAGATACACTCACACTTACATTTGTGACACACACAAACTGTACATGCCTGCCCAGTTCCTCCCAAGGTTTCTCAGCCCAATACTTTGCCACTGGACTGTCCATGTCTCTGGATGGCCTACTGACTGTTCCTGCTGCCGGCTGCTCCTTGACCTATCAGACCTCACATACCCAGTTTACACTCAGCACTCTCATTAAACCGCCATCTGTTCCTGGACCTGTGTGTGACCTGAGTCACCTGGACTCAGACCCCTGACTGTCTGCCTCAGTGGCTTCCTGCCTCTTCCCGATTTAGAGGTGTGGTTGCACTGCTAACTTGCTTGCCTCAGCACATGGCTGTGTGGCCGGGCGTTTCTGTACATTTgccataataaaaaaaaaaaagggaaacCGTTccaggagtgagaagaggagaaTGAGTAGCACACCCTGAACTCTGAATCAGACTTTATGACATTGACTTGAAAGAGAGGAAGAATCCACACAGCTCCGATATTTGTGccatccctctccacctcctgcAGTGATTCAGTTTGGTGCGCTGTTCATTGGAAGAGTTCAAGTTGATTGCATTTCACCTCCTTGTTGTGCACACTGTGAATCTCTGGAGTTGTTCCAACTAATCTGAAGATAAAAAATGGTCTCACTATTATGTACCTTATTTATACCAACAACAATCAGAGATTCTGACATGATAAAAGATTTATCAACAGGTCAGCTTAGCTGCTTGTTAAACCTGAGCTAAGAGGGGAGAGGATTGCTAAACGTTCCTCAACTGTTTTCTCAACGTAATGACACAGCTCCTATTACAAGGTAATTGTATCGCTGTTCAGTAGTAggcactcactctcacacacagacgGACAGGTGAATTCAGGGACTTTAGTTTTAGTTACTGGTTGTTAAATGAATGTGTCTGAATTCAAGTGTGTCTGAATAATCACAGGTGAATTTGGACTTGTTTTGTGTTGTCATCCTGTTGTTGTACTTTGTAACATGGAATAAAGCTTGTCATTTGGTTTGAAGT
>XM_036954576.1
AAGTCAACAGCTACCAGACAATTACTCATTGAGCTCCTCCCTGTACCTAGTCACCAAAGCCACACGTTTTCGTAGTGTAGAAACTTGTTTAGTATTTGTTCGTTAATTTAGTTGTAGGTATAATAAGCTATACAGCTAGAAACAGTTGATAGATTTCTCAATTATTTTGTAACCGCGTGATACTAGCTACAGCCAGGGTTTGTCAGACAACCGGTGCTTTGCCTTTGTAACTTGCTGACGTTACTGGAGACAGCTATCTAGCCAACTATCCATACATTCCCCGCTGTGTTTACTATTGGTAGAACGTGTAGGCTCTTTCTGGAGGGGAAATTATGAATTACTCAGATTATGATTCCGATGGCTATTCTTCAAATGCAGATCAAGACTATGTCCCATCTGATGACAACCTTAGTGAAGATGACATGAATGAATGTGTGAAAGAGGATGGTCTGGAAGGGGATGACCAGCATGGCCAACAGTCTGATAATGTCaccaagaagaaaaagaagaaaggCCAACACATTGGCATGAGgaaaagaaagaaaggaggactGAAGTTAGAGGAGACACTGCATGATTGCAGTGTGGAGGATCAGAAAGTagagcagggggaggagagagagttttCTACTCCCAGGCCCAagaaggaggaggatgaagagaaaaagaagaagaaggcaGATGATTTGTGGGCCAGTTTTCTGAGTGATGTTGGTCACAAATCCAAGCCACCTACCCCAGTGCCGCAGGCTACTACTAAACAGCAGGCTGCACCCACAGACAGTCCGAAGAAGCCCATTTCGGCTCCATCAGAACCTCAACTACCAGAGCCTAAAGAGCCCTCTAAAGTCACCATCACTAAGGTGTTTGACTTTGCTGGGGAAGAGGTCCGGGTATCCAAAGAGGTTGATGCTGACTCCAAGGAGGCCAAGAGCTTTCTGAAGGCCAAGGAGGAGACACCATATGTACAGACTGTACCCAGAAGATTTGAGCCCCCCTCCCTTGCCCCTGGACTGAGGTATGTGGAAAGAAAGAATTTTCTGGAGAGAGTTGACCACCGGCAGTTTGAGCAGGAAAAGAAAGTGCGTCTCGGCAACATCATGAAACGATGACAAGGAATAATGTTACAGATACACTCACACTTACATTTGTGACACACACAAACTGTACATGCCTGCCCAGTTCCTCCCAAGGTTTCTCAGCCCAATACTTTGCCACTGGACTGTCCATGTCTCTGGATGGCCTACTGACTGTTCCTGCTGCCGGCTGCTCCTTGACCTATCAGACCTCACATACCCAGTTTACACTCAGCACTCTCATTAAACCGCCATCTGTTCCTGGACCTGTGTGTGACCTGAGTCACCTGGACTCAGACCCCTGACTGTCTGCCTCAGTGGCTTCCTGCCTCTTCCCGATTTAGAGGTGTGGTTGCACTGCTAACTTGCTTGCCTCAGCACATGGCTGTGTGGCCGGGCGTTTCTGTACATTTgccataataaaaaaaaaaaagggaaacCGTTccaggagtgagaagaggagaaTGAGTAGCACACCCTGAACTCTGAATCAGACTTTATGACATTGACTTGAAAGAGAGGAAGAATCCACACAGCTCCGATATTTGTGccatccctctccacctcctgcAGTGATTCAGTTTGGTGCGCTGTTCATTGGAAGAGTTCAAGTTGATTGCATTTCACCTCCTTGTTGTGCACACTGTGAATCTCTGGAGTTGTTCCAACTAATCTGAAGATAAAAAATGGTCTCACTATTATGTACCTTATTTATACCAACAACAATCAGAGATTCTGACATGATAAAAGATTTATCAACAGGTCAGCTTAGCTGCTTGTTAAACCTGAGCTAAGAGGGGAGAGGATTGCTAAACGTTCCTCAACTGTTTTCTCAACGTAATGACACAGCTCCTATTACAAGGTAATTGTATCGCTGTTCAGTAGTAggcactcactctcacacacagacgGACAGGTGAATTCAGGGACTTTAGTTTTAGTTACTGGTTGTTAAATGAATGTGTCTGAATTCAAGTGTGTCTGAATAATCACAGGTGAATTTGGACTTGTTTTGTGTTGTCATCCTGTTGTTGTACTTTGTAACATGGAATAAAGCTTGTCATTTGGTTTGAAGT

Function

NR:

description
craniofacial development protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021570267.2 False 2310 mRNA 0.46 7 69775927 69827478
XM_036954576.1 True 2152 mRNA 0.45 6 69775927 69827479

Neighbor

gene id symbol gene type direction distance location
LOC110494902 LOC106560839 coding downstream 8561 69648833 ~ 69767366 (-)
LOC110492400 NA coding downstream 191035 69578169 ~ 69584892 (-)
gnao1a LOC106560843 coding downstream 226244 69411769 ~ 69549683 (-)
LOC110494854 LOC106560844 coding downstream 386234 69353662 ~ 69389693 (-)
LOC110494832 LOC106560845 coding downstream 433861 69331023 ~ 69342066 (-)
LOC110501833 LOC106560836 coding upstream 7153 69834632 ~ 69870691 (-)
LOC110494911 LOC106560835 coding upstream 43322 69870801 ~ 69892079 (-)
trnav-aac NA coding upstream 104050 69931529 ~ 69931601 (-)
trnav-aac-2 NA coding upstream 108334 69935813 ~ 69935885 (-)
trnav-aac-3 NA coding upstream 112595 69940074 ~ 69940146 (-)
G177909 NA non-coding downstream 16942 69758619 ~ 69758985 (-)
G177901 NA non-coding downstream 27953 69747773 ~ 69747974 (-)
G177896 NA non-coding downstream 37577 69738105 ~ 69738350 (-)
G177895 NA non-coding downstream 37916 69737547 ~ 69738011 (-)
G177890 NA non-coding downstream 41277 69734440 ~ 69734650 (-)
G177925 NA non-coding upstream 4347 69831826 ~ 69863384 (-)
G177969 NA non-coding upstream 40102 69867581 ~ 69868797 (-)
G178005 NA non-coding upstream 100505 69927984 ~ 69945427 (-)
G178056 NA non-coding upstream 249698 70077177 ~ 70077507 (-)
G178074 NA non-coding upstream 275663 70103142 ~ 70103632 (-)
G177487 NA other downstream 184205 69591135 ~ 69591722 (-)
G174505 NA other downstream 3083077 66692408 ~ 66692850 (-)
G173696 LOC106560906 other downstream 3385161 66375226 ~ 66390766 (-)
G173675 NA other downstream 3437541 66335412 ~ 66338386 (-)
LOC110501848 NA other upstream 733043 70552263 ~ 70642587 (-)
fam169b fam169b other upstream 941679 70769140 ~ 70773282 (-)
G179215 NA other upstream 1077893 70905372 ~ 70906254 (-)
ttc23 ttc23 other upstream 1099211 70926632 ~ 70945359 (-)
G179310 mef2a other upstream 1170566 70998045 ~ 71070204 (-)

Expression


Co-expression Network