LOC110494911 (LOC106560835)


Basic Information

Item Value
gene id LOC110494911
gene name LOC106560835
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 69870801 ~ 69892079 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021570248.2
GTTGAGTGTCAGGTAACAGTCAGGAGAGTTGAGTGAGAAATTGAGCAAGCCAAGCAGATCTAGAAAGATGAAGTATTCCTTTCTAGTGCAGGTGTTACCGATGGACGGAGCACCAACAGATGTTGTGGTTGAGGCCAAGGACTTCACCtatgagggggaggaggtggtggcaGACCTGCTCCAGCAAGCAGCAGAAGGGGTGATGGACCAGCAGCCAGAGGGAGTTGCTGGTCTGGATACCCAGCAGCTGGTGGAGGGAGTCAATGTGGAGATGATGGTAATGGACTCCCTGGACCCGGCCCTGCTGCAGTTGAAGACTGAGGTGATGGATGCCCCTGTGGCTACAGCCCACGAGGCCACGGTCACCACGGTGGATGAGACCCAGATCATCACTCTGCAGGTTGTCAACATGGATGAGCAGCAGCTGGGGGGCCTCAGGGAGCTACAGCTGGTCCAGGTCCCTGTCTCTGCTGTCCCTGTCACCCAGGCCACTGTAGAGGCGCTACAGGGCACCTTCGTGGACACCACGGCCATGCCCAAAGACGGAAACCCTGTTATCTGCCACACCCTGCCCCTGCCAGAGGGATTCCAGGTGGTGAAGGTGGGTGCGAATGGTGAGGTGGAAACAGTGGAGCAGGATGAGCTCCAGCACCAAGAGGAACAGCAGGTCCagcctgaggaggaggaggaggagctgcagTGTGAGCCCCAGCCTGAAGAACCACAATGGTCCAAGGACCCCGACTACCAGCCCCCTGCCAAGAAGACCATCAAGAAGGCAAAAAAGAGCACGCTGCGCTACAACACAGAGGGGGATAAAGACAACATGGACGTGTCTGTGTATGATTTTGAGGAGGAGCAGCAGGAAGGGATGCTCTCTGAGGTCAACGCAGAGAAGGTGGTGGGCAACATGAAACCCCCCAAACCCACCAAAATTAAGAAGAAGGGTGTGAAGAAAACATTCCAGTGTGAGCTGTGTAGCTACACCTGTCCCCGCCGCTCCAACTTGGACCGACACATGAAAAGTCACACAGATGAGAGGCCCCACAAGTGCCATCTGTGTGGAAGGGCCTTCAGGACTGTTACCCTGCTAAGGAaccacctcaacacacacacagGTACCAGACCACACAAGTGTCAAGATTGTGACATGGCCTTCGTGACCAGTGGAGAGCTGGTCCGACATCGTCGCTACAAGCACACTCATGAGAAACCCTTCAAGTGCTCCATGTGTGACTATGCCAGTGTAGAGGTGAGCAAGCTAAAGCGGCACATCCGTTCCCACACTGGGGAGCGTCCGTTCCAGTGCAGTCTGTGCAGCTACGCCAGCAGAGACACCTACAAGCTGAAGAGACACATGAGGACACACTCGGGAGAGAAGCCGTACGAGTGCTATATTTGCCACGCCCGTTTCACCCAGAGTGGAACCATGAAGATGCACATCCTGCAGAAGCACACAGAGAACGTGGCTAAGTTCCACTGCCCCCACTGTGACACAGTCATCGCCCGAAAGAGTGACCTGGgTGTCCACCTGCGAAAACAGCACTCGTTCATTGAGCAGGGCAGGAAATGTCGTTACTGTGATGCTGTGTTCCACGAGCGCTATGCACTCATCCAGCACCAGAAGTCCCACAAGAACGAGAAACGCTTCAAGTGTGACCAGTGTGATTACTGCTGCAGACAGGAGCGCCACATGCTGATGCACAGGCGcacccacacaggagagaagccttacgcCTGTAGCCAGTGTGAGAAGACCTTCCGTCAGAAGCAGCTCCTGGACATGCACTTCCGGCGTTACCATGACCCCAACTTTGTGCCCACCGCCTTTGTGTGCACCAAGTGTGGCAAGGCCTTCACCCGCAGGAACACCATGGCCAGACATGCAGAGAACTGTAACGGGGATCCTAGTGAAGGAGAGAACGGATCCCCACCCAAGAGGGGACGaggtgggaggaagaggaagatgcgCTCAAGGAAGGACGAAgacgatgatgatgacgatgacgaCAGTGAGGACAATGCTGATCCTGAGCTGGATGACATtgatgaagaggatgaggaggctgAGGAAGCActgctggaggaagaggaggaggaggaggagatgatggAGTTGGAGCAGGCTCCACCCACCAAACCTATTCCTGCCCCTGTAGAGCCACCTGTCAAGAGGAAACGCGGCAGACCTCCCAAGAATATTCCCAAACCCTCCCCTCCCGCCAAAGCCAGCAAGGCTGCCCCCAAAAGCAAGGCTGCTGCAGCTGCAGCCGTCATCCAGGTGGAGGATGAGAATACCGGCGCCATAGAGAACATCATAGTGAAGAAGGAGCAAGAGGCTGAGCAGGCTGCCCCAGAGGTGGTGGTGGAGCAACCAGAGGAGGCAGGGGTGGAGACGGTGGAGCTGCCTGTAGCAGACGCTGCCCCCAACGGAGACCTCACCCCTGAGATGATCCTCAGCATGATGGACCGGTGATCTAGCCCACACAGACTGCTCAAAGACATCCCCTTGTCTCAACCTTTCCCTTCAACAAGTCTACCCTCTTCATACGATCTGCCATCTTACAAACCACTCTGCTTTACACTTTTGGTTTTTGTCTTAAACTAATCGGTGTGTTTTCTTATCACTCTCAAACCCACTTCCTTCCATGCATTCACTGTAACAGTTTAAGTTCTAGCTGCTTGGTCTGTAGAAATGTAGATCTTTTTTTGTGGGAGGAATGTTGTAGAAACGTGTAATAATGAATCCCTTCATGGAGGGATGGTAGCTGAGGTTTGACACGTGGACATTTTCTCTTTTTTCCCTCCAACTAATAAACTATTTTCTTAACCTGTTTGTGAGCTTGACATGGCAACAGTGAGTGCCAGTAATTTCAGCCTTGTTATCTAGGACCTCTGCGgtagactaaaactattactttcACTGTCAAAGGAAGTCCTTCCATTTTTTAACACTTTATTCACTGCATATTACATTTTACTTACTGTTATACTTGTCACATTATGGAGTTTGTAGAGGCTTTTACATTAACTACTATAATCGGGGACAGTGACATGCATCGACCCACAAAGTTTTTAAGACTGCAGTTATGTTGTACAAACGGTCATCGGCTGGTTTTGCCTGTAAATACTTTTTTAGTTTTATTACAAACATATTTGAATCTTTTTCTAGTGATCTAAAAAACTTTAATGCTGGGAGAAAGGAACTATTAACCATAGCTGTTTGGAACACAGGCAGTATGGAGATTTCTAATCTCTTACATGGGAGGCTTTGCCCACCCTGTAAATCATGTTGGAGATATGATCTTTCCAGTTTTGAGCTTTTTAGCCTGAATATCTACTGTTCTTTTTGGAGGTATAGAGGTTGGAAGCTTTACTCACTCTTAACCTACCTAACATCTCGACCGCATGGACTAATGTTAGAGGTTTTGAAAGATGACCATGTACGTCTTGTTTTGCTTTTCAAGATAAGGTAGAGAGATTGGGATGTAAATTGCGCCCATGTTCTGGAAAGCTAGAATCTAGTTGTGTGTTAAACTGTAAAGGAGGGAGGTGTCCACTTGAACTAGCTTCAGGTCTTAACTGTAAAGGAAAGATTATTAAGGCTTTGGTAATCTTGTGAAGCAGAACCTTTCTCCCAGTTCACTGTTCATTTCTCAAACCATTTTGTCCTAATGGTGCAGTTGTGTTGTGGGATGTATACAGACGCGGTCAGAGGGCCTTGTGGAATTCTGATTAGGAGGTTCAAAAAGGGGAGAAGAGAACTATAAGGGAAAGATATTTTGTATAAAGGTTGTTAGTCGTTTCAGAGAACAATGTTCTTTCTTTCGTAGACCATTTGACGCTGATACAACATGAAGCTTCCTTCTATATGTAATTGCATTTAAATTGCTTTTGTCAAGCTCTTAAAAATTATAGGTTGATGCATTTTTGTACCTGGCTGTACTGTGTGAATTTTACAATGATCTGAAAACCAACATAAATACATGTATTGTTGGGTTGAGAGGGCATGTTGGTATGCGGAATGTCTTACTGTACAGCTAATAAAAAGATATTGGCCTA
>XM_021570256.2
CCTCTCGCCACCGCCCCCCTTCAATGCACAGGCGCACTAACTTTCACAAGGCCGCCATTTTGTGCGGAGCCCACTCTGCAAAAGCGGGAGAGGATTAAAACCGCAGGAGAAGAAGGGCGCAATTCTCAGCCATCTCGATCTGATTGAAGAACATACTCTGGGCTTTCTGTCGAATTCAGTGAGGAATTAAACGACGTAGAGCAGGTGTTACCGATGGACGGAGCACCAACAGATGTTGTGGTTGAGGCCAAGGACTTCACCtatgagggggaggaggtggtggcaGACCTGCTCCAGCAAGCAGCAGAAGGGGTGATGGACCAGCAGCCAGAGGGAGTTGCTGGTCTGGATACCCAGCAGCTGGTGGAGGGAGTCAATGTGGAGATGATGGTAATGGACTCCCTGGACCCGGCCCTGCTGCAGTTGAAGACTGAGGTGATGGATGCCCCTGTGGCTACAGCCCACGAGGCCACGGTCACCACGGTGGATGAGACCCAGATCATCACTCTGCAGGTTGTCAACATGGATGAGCAGCAGCTGGGGGGCCTCAGGGAGCTACAGCTGGTCCAGGTCCCTGTCTCTGCTGTCCCTGTCACCCAGGCCACTGTAGAGGCGCTACAGGGCACCTTCGTGGACACCACGGCCATGCCCAAAGACGGAAACCCTGTTATCTGCCACACCCTGCCCCTGCCAGAGGGATTCCAGGTGGTGAAGGTGGGTGCGAATGGTGAGGTGGAAACAGTGGAGCAGGATGAGCTCCAGCACCAAGAGGAACAGCAGGTCCagcctgaggaggaggaggaggagctgcagTGTGAGCCCCAGCCTGAAGAACCACAATGGTCCAAGGACCCCGACTACCAGCCCCCTGCCAAGAAGACCATCAAGAAGGCAAAAAAGAGCACGCTGCGCTACAACACAGAGGGGGATAAAGACAACATGGACGTGTCTGTGTATGATTTTGAGGAGGAGCAGCAGGAAGGGATGCTCTCTGAGGTCAACGCAGAGAAGGTGGTGGGCAACATGAAACCCCCCAAACCCACCAAAATTAAGAAGAAGGGTGTGAAGAAAACATTCCAGTGTGAGCTGTGTAGCTACACCTGTCCCCGCCGCTCCAACTTGGACCGACACATGAAAAGTCACACAGATGAGAGGCCCCACAAGTGCCATCTGTGTGGAAGGGCCTTCAGGACTGTTACCCTGCTAAGGAaccacctcaacacacacacagGTACCAGACCACACAAGTGTCAAGATTGTGACATGGCCTTCGTGACCAGTGGAGAGCTGGTCCGACATCGTCGCTACAAGCACACTCATGAGAAACCCTTCAAGTGCTCCATGTGTGACTATGCCAGTGTAGAGGTGAGCAAGCTAAAGCGGCACATCCGTTCCCACACTGGGGAGCGTCCGTTCCAGTGCAGTCTGTGCAGCTACGCCAGCAGAGACACCTACAAGCTGAAGAGACACATGAGGACACACTCGGGAGAGAAGCCGTACGAGTGCTATATTTGCCACGCCCGTTTCACCCAGAGTGGAACCATGAAGATGCACATCCTGCAGAAGCACACAGAGAACGTGGCTAAGTTCCACTGCCCCCACTGTGACACAGTCATCGCCCGAAAGAGTGACCTGGgTGTCCACCTGCGAAAACAGCACTCGTTCATTGAGCAGGGCAGGAAATGTCGTTACTGTGATGCTGTGTTCCACGAGCGCTATGCACTCATCCAGCACCAGAAGTCCCACAAGAACGAGAAACGCTTCAAGTGTGACCAGTGTGATTACTGCTGCAGACAGGAGCGCCACATGCTGATGCACAGGCGcacccacacaggagagaagccttacgcCTGTAGCCAGTGTGAGAAGACCTTCCGTCAGAAGCAGCTCCTGGACATGCACTTCCGGCGTTACCATGACCCCAACTTTGTGCCCACCGCCTTTGTGTGCACCAAGTGTGGCAAGGCCTTCACCCGCAGGAACACCATGGCCAGACATGCAGAGAACTGTAACGGGGATCCTAGTGAAGGAGAGAACGGATCCCCACCCAAGAGGGGACGaggtgggaggaagaggaagatgcgCTCAAGGAAGGACGAAgacgatgatgatgacgatgacgaCAGTGAGGACAATGCTGATCCTGAGCTGGATGACATtgatgaagaggatgaggaggctgAGGAAGCActgctggaggaagaggaggaggaggaggagatgatggAGTTGGAGCAGGCTCCACCCACCAAACCTATTCCTGCCCCTGTAGAGCCACCTGTCAAGAGGAAACGCGGCAGACCTCCCAAGAATATTCCCAAACCCTCCCCTCCCGCCAAAGCCAGCAAGGCTGCCCCCAAAAGCAAGGCTGCTGCAGCTGCAGCCGTCATCCAGGTGGAGGATGAGAATACCGGCGCCATAGAGAACATCATAGTGAAGAAGGAGCAAGAGGCTGAGCAGGCTGCCCCAGAGGTGGTGGTGGAGCAACCAGAGGAGGCAGGGGTGGAGACGGTGGAGCTGCCTGTAGCAGACGCTGCCCCCAACGGAGACCTCACCCCTGAGATGATCCTCAGCATGATGGACCGGTGATCTAGCCCACACAGACTGCTCAAAGACATCCCCTTGTCTCAACCTTTCCCTTCAACAAGTCTACCCTCTTCATACGATCTGCCATCTTACAAACCACTCTGCTTTACACTTTTGGTTTTTGTCTTAAACTAATCGGTGTGTTTTCTTATCACTCTCAAACCCACTTCCTTCCATGCATTCACTGTAACAGTTTAAGTTCTAGCTGCTTGGTCTGTAGAAATGTAGATCTTTTTTTGTGGGAGGAATGTTGTAGAAACGTGTAATAATGAATCCCTTCATGGAGGGATGGTAGCTGAGGTTTGACACGTGGACATTTTCTCTTTTTTCCCTCCAACTAATAAACTATTTTCTTAACCTGTTTGTGAGCTTGACATGGCAACAGTGAGTGCCAGTAATTTCAGCCTTGTTATCTAGGACCTCTGCGgtagactaaaactattactttcACTGTCAAAGGAAGTCCTTCCATTTTTTAACACTTTATTCACTGCATATTACATTTTACTTACTGTTATACTTGTCACATTATGGAGTTTGTAGAGGCTTTTACATTAACTACTATAATCGGGGACAGTGACATGCATCGACCCACAAAGTTTTTAAGACTGCAGTTATGTTGTACAAACGGTCATCGGCTGGTTTTGCCTGTAAATACTTTTTTAGTTTTATTACAAACATATTTGAATCTTTTTCTAGTGATCTAAAAAACTTTAATGCTGGGAGAAAGGAACTATTAACCATAGCTGTTTGGAACACAGGCAGTATGGAGATTTCTAATCTCTTACATGGGAGGCTTTGCCCACCCTGTAAATCATGTTGGAGATATGATCTTTCCAGTTTTGAGCTTTTTAGCCTGAATATCTACTGTTCTTTTTGGAGGTATAGAGGTTGGAAGCTTTACTCACTCTTAACCTACCTAACATCTCGACCGCATGGACTAATGTTAGAGGTTTTGAAAGATGACCATGTACGTCTTGTTTTGCTTTTCAAGATAAGGTAGAGAGATTGGGATGTAAATTGCGCCCATGTTCTGGAAAGCTAGAATCTAGTTGTGTGTTAAACTGTAAAGGAGGGAGGTGTCCACTTGAACTAGCTTCAGGTCTTAACTGTAAAGGAAAGATTATTAAGGCTTTGGTAATCTTGTGAAGCAGAACCTTTCTCCCAGTTCACTGTTCATTTCTCAAACCATTTTGTCCTAATGGTGCAGTTGTGTTGTGGGATGTATACAGACGCGGTCAGAGGGCCTTGTGGAATTCTGATTAGGAGGTTCAAAAAGGGGAGAAGAGAACTATAAGGGAAAGATATTTTGTATAAAGGTTGTTAGTCGTTTCAGAGAACAATGTTCTTTCTTTCGTAGACCATTTGACGCTGATACAACATGAAGCTTCCTTCTATATGTAATTGCATTTAAATTGCTTTTGTCAAGCTCTTAAAAATTATAGGTTGATGCATTTTTGTACCTGGCTGTACTGTGTGAATTTTACAATGATCTGAAAACCAACATAAATACATGTATTGTTGGGTTGAGAGGGCATGTTGGTATGCGGAATGTCTTACTGTACAGCTAATAAAAAGATATTGGCCTA

Function

NR:

description
transcriptional repressor CTCF-like isoform X1

GO: NA

KEGG:

id description
K23195 CTCF, CTCFL; transcriptional repressor CTCF

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021570248.2 False 4062 mRNA 0.49 11 69870801 69890649
XM_021570256.2 True 4175 mRNA 0.49 11 69870801 69892079

Neighbor

gene id symbol gene type direction distance location
LOC110501833 LOC106560836 coding downstream 110 69834632 ~ 69870691 (-)
LOC110494926 LOC106560838 coding downstream 43322 69775927 ~ 69827479 (-)
LOC110494902 LOC106560839 coding downstream 103435 69648833 ~ 69767366 (-)
LOC110492400 NA coding downstream 285909 69578169 ~ 69584892 (-)
gnao1a LOC106560843 coding downstream 321118 69411769 ~ 69549683 (-)
trnav-aac NA coding upstream 39450 69931529 ~ 69931601 (-)
trnav-aac-2 NA coding upstream 43734 69935813 ~ 69935885 (-)
trnav-aac-3 NA coding upstream 47995 69940074 ~ 69940146 (-)
trnav-aac-4 NA coding upstream 52203 69944282 ~ 69944354 (-)
trnav-aac-5 NA coding upstream 56422 69948501 ~ 69948573 (-)
G177969 NA non-coding downstream 2004 69867581 ~ 69868797 (-)
G177925 NA non-coding downstream 7417 69831826 ~ 69863384 (-)
G177909 NA non-coding downstream 111816 69758619 ~ 69758985 (-)
G177901 NA non-coding downstream 122827 69747773 ~ 69747974 (-)
G177896 NA non-coding downstream 132451 69738105 ~ 69738350 (-)
G178005 NA non-coding upstream 35905 69927984 ~ 69945427 (-)
G178056 NA non-coding upstream 185098 70077177 ~ 70077507 (-)
G178074 NA non-coding upstream 211063 70103142 ~ 70103632 (-)
G178075 NA non-coding upstream 212595 70104674 ~ 70104899 (-)
G178076 NA non-coding upstream 213275 70105354 ~ 70106158 (-)
G177487 NA other downstream 279079 69591135 ~ 69591722 (-)
G174505 NA other downstream 3177951 66692408 ~ 66692850 (-)
G173696 LOC106560906 other downstream 3480035 66375226 ~ 66390766 (-)
G173675 NA other downstream 3532415 66335412 ~ 66338386 (-)
LOC110501848 NA other upstream 668443 70552263 ~ 70642587 (-)
fam169b fam169b other upstream 877079 70769140 ~ 70773282 (-)
G179215 NA other upstream 1013293 70905372 ~ 70906254 (-)
ttc23 ttc23 other upstream 1034611 70926632 ~ 70945359 (-)
G179310 mef2a other upstream 1105966 70998045 ~ 71070204 (-)

Expression


Co-expression Network