Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110533850 |
| gene name | NA |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048566.1 |
| NCBI id | CM023220.2 |
| chromosome length | 103806877 |
| location | 69912367 ~ 69913406 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| uncharacterized protein LOC110503783 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XR_002475053.2 | False | 597 | mRNA | 0.40 | 3 | 69912577 | 69913406 |
| TU201870 | True | 245 | lncRNA | 0.49 | 3 | 69912367 | 69912809 |
69,908,800
69,909,200
69,909,600
69,910,000
69,910,400
69,910,800
69,911,200
69,911,600
69,912,000
69,912,400
69,912,800
69,913,200
69,913,600
69,914,000
69,914,400
69,914,800
NC_048566.1
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| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110494936 | LOC106560837 | coding | upstream | 77854 | 69827510 ~ 69834723 (+) |
| LOC110494892 | LOC106560841 | coding | upstream | 303807 | 69598438 ~ 69608770 (+) |
| b3gnt9 | LOC106560847 | coding | upstream | 580052 | 69326107 ~ 69332525 (+) |
| LOC110494820 | NA | coding | upstream | 586587 | 69315568 ~ 69325990 (+) |
| psme3ip1 | LOC106560853 | coding | upstream | 735880 | 69166795 ~ 69176697 (+) |
| LOC110494959 | cssa10h7orf43 | coding | downstream | 817 | 69914223 ~ 69923578 (+) |
| trnav-cac | NA | coding | downstream | 14109 | 69927515 ~ 69927587 (+) |
| trnav-cac-2 | NA | coding | downstream | 18374 | 69931780 ~ 69931852 (+) |
| trnav-cac-3 | NA | coding | downstream | 22666 | 69936072 ~ 69936144 (+) |
| trnav-cac-4 | NA | coding | downstream | 26926 | 69940332 ~ 69940404 (+) |
| G177677 | ctcf | non-coding | upstream | 22884 | 69888743 ~ 69889693 (+) |
| G177612 | NA | non-coding | upstream | 135528 | 69776076 ~ 69777049 (+) |
| G177611 | NA | non-coding | upstream | 137995 | 69774366 ~ 69774582 (+) |
| G177607 | NA | non-coding | upstream | 142363 | 69769965 ~ 69770214 (+) |
| G177606 | NA | non-coding | upstream | 142869 | 69769451 ~ 69769708 (+) |
| G177714 | NA | non-coding | downstream | 5973 | 69919379 ~ 69960970 (+) |
| G177724 | NA | non-coding | downstream | 14961 | 69928367 ~ 69933286 (+) |
| G177728 | NA | non-coding | downstream | 25287 | 69938693 ~ 69948541 (+) |
| G177729 | NA | non-coding | downstream | 26903 | 69940309 ~ 69944760 (+) |
| G177689 | NA | non-coding | downstream | 85574 | 69998980 ~ 69999899 (+) |
| G177067 | NA | other | upstream | 455144 | 69456558 ~ 69457433 (+) |
| G176725 | lonp2 | other | upstream | 954691 | 68956263 ~ 68957886 (+) |
| G176612 | LOC100846954 | other | upstream | 1051209 | 68860838 ~ 68861368 (+) |
| hsbp1b | LOC106561110 | other | upstream | 2424376 | 67486128 ~ 67488205 (+) |
| LOC110494472 | utp4 | other | upstream | 2672681 | 67232278 ~ 67239902 (+) |
| G177812 | NA | other | downstream | 193880 | 70107286 ~ 70113440 (+) |
| igf1ra | igf1r | other | downstream | 882004 | 70794530 ~ 70905277 (+) |
| LOC110495604 | LOC106573778 | other | downstream | 2146311 | 72059717 ~ 72065199 (+) |
| LOC110533853 | LOC106561194 | other | downstream | 2340032 | 72250884 ~ 72253809 (+) |
| G181995 | NA | other | downstream | 3427974 | 73341380 ~ 73342277 (+) |
