XLOC_020682 (KCTD20)


Basic Information

Item Value
gene id XLOC_020682
gene name KCTD20
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 898131 ~ 910926 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00040891
ATGTTTGTTGGCAACTTTAATCTAAACTTGTCAACTTTGACTCGTTTAAACCGCTGTGGTAAATCATCCCTCAGAGAGATCTTCCCGCCATGCGCCTCACGTCAGCTTTTATTGGATTACCAGTTAATCCCAGAGGGCGGGGCTGATGTCACAAAGGGGGTATGGCCTGCACAGCCACGCCCCCTATCACATGACCGGGTCACGTTAGTAGTCGACGGGACTCATTTCGTGGTGGATCCTGCAGTGTTCACAGCATACCCGGATACAGTGCTAGGAAGGATGTTCGGTCGAGCACGTCAGCACAGTTTTACACGGCCAAACACTAAAGGCGAATATGAAATCGCTGAGGGAATCGGTGCCAGCATTTTCAGAATCATACTGGATTTTTACCGAGTCGGCATCCTGCACTGTCCGGAGGGCGTGTCCTTGGCGGAGCTGCGCGAAGCCTGCGATTATCTGTGTATAAACTTCGACTACAACACCGTCAGATGCAGAGACCTCAGCGCTCTCCTGCACGAGCTGTCCAATGACGGCGCTCGGCGGCAGTTCGAGGTGTTTCTGGAGGAGCTGTTGCTGCCGGCGATGGTTTCCAGTGCTCAGGAGGGAGAGCGAGAGTGCCACATCGTGGTGCTCACAGACGATGATACTGTAGACTGGGATCACGACAACCCTCCGCCAATGGGAGAGGAGCACTCGCAAATCATCTACAGCACCAAACTCTACCGTTTCTTCAAGTTTATTGAAAACAGAGACGTCGCAAAAGCTCATCTCAAGGAGCGAGGCCTGAAAAACATACGCATCGGTATTGAAGGGTATCCCACCTGTAAGGAGAAGGTGAAGCGGCGTCCTGGCGGGAAGTCGGAGGTGATTTACAGCTACCTGCAGCGTCCGTTCATCCAGCTGTCCTGGGAGAAGGAGGAGGGCAAGAGCCGACACGTGGACTTCCAGTGTGTGCGCAGCCGCAGCGTGCCAAACCTCATCACCGCCATGGGGGAGGGACCAACACGAGCCGGAGCCACGCCCACTCCACAGGTCGATGAGTTAGATCGGCTGAACGGCCCCGCCCCTCCTGCACCAAACATTTTCATATGCTGTTAG
>TCONS_00040892
aaatttctctcacgtcctcttcttgcCTTGCTGTCAACTGACCAACTAACtgacccacccccttcccttaacccaacccatagtgttttcaaaagcaatccaaaaaaagaaaagctgtcCCGTGATTCACCGcCCCGAGGGATGACAGTCGGAGCAGAGGGCGGGGCTGATGTCACAAAGGGGGTATGGCCTGCACAGCCACGCCCCCTATCACATGACCGGGTCACGTTAGTAGTCGACGGGACTCATTTCGTGGTGGATCCTGCAGTGTTCACAGCATACCCGGATACAGTGCTAGGAAGGATGTTCGGTCGAGCACGTCAGCACAGTTTTACACGGCCAAACACTAAAGGCGAATATGAAATCGCTGAGGGAATCGGTGCCAGCATTTTCAGAATCATACTGGATTTTTACCGAGTCGGCATCCTGCACTGTCCGGAGGGCGTGTCCTTGGCGGAGCTGCGCGAAGCCTGCGATTATCTGTGTATAAACTTCGACTACAACACCGTCAGATGCAGAGACCTCAGCGCTCTCCTGCACGAGCTGTCCAATGACGGCGCTCGGCGGCAGTTCGAGGTGTTTCTGGAGGAGCTGTTGCTGCCGGCGATGGTTTCCAGTGCTCAGGAGGGAGAGCGAGAGTGCCACATCGTGGTGCTCACAGACGATGATACTGTAGACTGGGATCACGACAACCCTCCGCCAATGGGAGAGGAGCACTCGCAAATCATCTACAGCACCAAACTCTACCGTTTCTTCAAGTTTATTGAAAACAGAGACGTCGCAAAAGCTCATCTCAAGGAGCGAGGCCTGAAAAACATACGCATCGGTATTGAAGGGTATCCCACCTGTAAGGAGAAGGTGAAGCGGCGTCCTGGCGGGAAGTCGGAGGTGATTTACAGCTACCTGCAGCGTCCGTTCATCCAGCTGTCCTGGGAGAAGGAGGAGGGCAAGAGCCGACACGTGGACTTCCAGTGTGTGCGCAGCCGCAGCGTGCCAAACCTCATCACCGCCATGGGGGAGGGACCAACACGAGCCGGAGCCACGCCCACTCCACAGGTCGATGAGTTAGATCGGCTGAACGGCCCCGCCCCTCCTGGCCTCGACCAATGA

Function

symbol description
kctd20 Orthologous to human KCTD20 (potassium channel tetramerization domain containing 20).

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-100408-1 Orthologous to human KCTD20 (potassium channel tetramerization domain containing 20).

Ensembl:

ensembl_id ENSDARG00000114704

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00040891 False 1098 mRNA 0.54 8 898131 910926
TCONS_00040892 True 1110 mRNA 0.55 8 901585 906757

Neighbor

gene id symbol gene type direction distance location
XLOC_020681 cept1b coding downstream 16406 866681 ~ 881725 (-)
XLOC_020680 dram2b coding downstream 31935 856869 ~ 866196 (-)
XLOC_020679 cry4 coding downstream 64025 819656 ~ 834106 (-)
XLOC_020678 TMEM263 coding downstream 80652 812848 ~ 817479 (-)
XLOC_020677 rbbp5 coding downstream 114021 770001 ~ 784110 (-)
XLOC_020683 cacna1sa coding upstream 1524 912450 ~ 968484 (-)
XLOC_020684 NA coding upstream 107419 1018345 ~ 1023531 (-)
XLOC_020685 si:ch1073-15f12.3 coding upstream 162487 1073413 ~ 1079773 (-)
XLOC_020686 NA coding upstream 245504 1156430 ~ 1168291 (-)
XLOC_020687 NA coding upstream 271158 1182084 ~ 1182479 (-)
XLOC_020676 NA non-coding downstream 137245 739300 ~ 760886 (-)
XLOC_020675 NA non-coding downstream 162887 733244 ~ 735244 (-)
XLOC_020673 NA non-coding downstream 193224 700213 ~ 704907 (-)
XLOC_020672 NA non-coding downstream 200627 659917 ~ 697504 (-)
XLOC_020664 NA non-coding downstream 502231 392619 ~ 395900 (-)
XLOC_020689 CU570769.4 non-coding upstream 318980 1229906 ~ 1230022 (-)
XLOC_020690 NA non-coding upstream 350024 1260950 ~ 1269440 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000186_00209162_00212762 KCTD20 coding CI01000186 null 209162 ~ 213137 (+)
bowfin (Amia calva) AMCG00013886 kctd20,LOC106572174 coding CM030125.1 CM030125.1 46009104 ~ 46023024 (-)