zgc:152891 (LOC106560831)


Basic Information

Item Value
gene id zgc:152891
gene name LOC106560831
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 69960093 ~ 69980350 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021570292.2
ACAAGTGTCTTTTGAAAAGGAACACACAGGCAGTTGCAGTATGCTGTGTTTGTCTTCTTCATAGGAAAACAGAAGtgcCATGGAGGAATTTCAGGTGATCGTCCATACCTTACCAGCCCCCACCTCTGGAACATACAGCATCCTACGGCTCACTCTGATTGGCTCAGAGGGTAGCGAAACCCCACCCATCTCAGTGAACGCTGGGGCCAACCAGCACCACCTCCTACCTGGATCCGCCTGTGTGGTCAGAGTGTGGTCACAGGTGGCACTGGGTCGAGTAGTTCTGGTCCGGCTACGGTTGGAGGCTCGGACGGGTTTCCCGGACCTGGACTGGCACTGCAGGGGGGTGGAGGTCCGGAGGCTGTGTGACAGACAGGAGGAAGGGGCGGGGCTACAGCACCAAGGGGCAGAGCACTTCCCTTGTTGCAGGTGGCTCCGGTCTGTAGATGGTGACGTGGAGCTACGGAATGGAGACAtgtgtctGTTGAACTCAGAGACTGTGCAAACACTGAAGGACCACAGACTCAAAGATCTGCACACTAAACAGCAGCACATAAGGTGGCGTACGTTTGCTGAGGGTGTCCCTCACTGTGTGGACATGACCAGTCTGAAGGAACTGGGACCCAACCTCAGCTACACACGCCAAAGCCCAGGCATCAATCTGCAGTATCTAAGGGGTTTTGCTGAGAGAGCTGAATCCTGGAGTAGCTTTACTGAGCTGGAGACCATGTTCAGCCACAATGGGAGCCAGAATACTGTCGCTAAGTATGTGCAGGCCCATTGGGCTGAGGACTGGTTCTTTGGCTACCAGTGTTTGAACGGCTGTAACCCTCTCATGGTGCGACAGACACGCCTCCTCCCTCCCAACCTGTCAATCAACTCTGACATTCTCTGCCCCTTCCTGCCTGACGGATCCTCACTGGAACAGGagctagagAGAGGGTCTATTTTCCTGCTGGACTACGAGATGTTGGAAGGTGTCCCGGCCAACGTGATCAATGGGAAGCAGCAGTTTCTCGCCGCCCCGCTAGTCCTTCTGCACCTCAACCAGGAAGGGGAGCTCAAACCCATCGCCATCCAACTGCAGCAGGCCCCTGGTCCTCAGAACCCAGTGTTCCTGCCCTCTGACCCTGGCCCTGATTGGCTGTTGGCTAAGACCTGGGTGCGCTGCTCAGACTTCCAGTGCCACCAGCTTTCCTCTCACTTCCTCAGAACCCACCTGCTGGGAGAGGTGTGTTGCACTGCCACCCTCAGGCAGCTGCCAGAAGTACACCCTCTACACCAGTTGTTGATGCCTCACataaaaaccacactacagaTCAACATCCAAGCCAGGGCCTCTCTACTGGCTGCCAACGGAGTGTTTGACAAGGCCGTAGGCTGTGGTCTGGAGGCGTTGCCTGTACTGTTGTCTCGAGCCACAGAGCGTCTGCGTTACCGCTCCCTGTGTGTCCCTGACGACCTGGCAGACAGAGGgatacacacactcaaacactgcTACTATGCACATGACGCACTGCGAGTGTGGACCGCACTGCACAGATTTGTGAGTGGCTGGGTGGATGTGTATTACCTTGGAGACCAGGATGTGGAGCAGGACTCTGAACTGCAGAGCTGGATCACTGAGATCTACACACATGGCTTCCTACAGCTCCCTCACTCAGGTTGCCCACAGTCATTCCAAACCAAACCAGAACTCTCTCAGTTTGTTACCATGGTTATATACTGCTGCTCTGCGCTGCACGCTGCTGTCAACTTCTCTCAGGTGGATTTTGACCTGTGGATGCCCAACTGCCCAGCCTCCATGACGCACCCCCCTCCCCAGACCAAAGGCATGTTGACGGAAGACGagattctctccatcctcccggACGTCAACTCCACCTGCAACCTCCTCATCACTCTGTTCCTACTGTCCCAGCCCGCTGCAGACTACGTGCCTCTGTGTCAGTATCGTGAGCCTGTGTTCAGCAGTGGCGCTCCCCGCAGGCTGGTGGAGAAGGTGCAGGCCGAGCTCAGGGCCATTTCTGGTGAGATCACAGACAGGAACAAGAAGTTGGAGCTGCCCTATGACTACATGTCCCCCGACCGCATCGAGAACAGTGTGGCCATCTGAGCTGCTGTGaatacacccacacagacacgcatgcacacacgttATGTTCTATCCTCGTAGGGACCTAAAATTAATTTCCATTCGaagtcctattttccctaaccctcaACTTAAAATAGCCTTTATCCTCGtgattttaggtccccacaaggatagaagtACCAACCAAtccacacatgcatgcacacacagacaagtAGACACACAGACCCCAAGgtgtgcgcacacacagacacttccAGCCACATGCACAAACATAAACGACAGCTTAAggttaaaaaaaagtgttaaaacctGCTCTATAATGatttaactatattaaccacaatgTTTCTTCCGTTTCTATGAATCACGCTTTGAATCACGCAGTTTCTATGAATCACGCTTTGAAGGTGTTAGTGCTGCAGGGGTTTAATGGTTTTGATGAAAAGCAGCTAAACACAGCGATCAGGTAGTTCACACTCCTCTCCTAATATAAACCAGGAATCGACAACAGCTGGCAATAATAccggctgcatctcaatagtatATAGTGGCCTCCTCTCCTATTATCCTGTCCTTTTCTCCTCCATCCTTGCTGAGCAAGAGGTTGACTAGGACAGCTTCCACCTGTCTTGTTTAAAATGATTTCTTTAACATgtctcatccccttcatctacactgattgaagtgaatttaacaagtgatatcaataaaagatgagttttcacctgga
>XR_005037698.1
ACAAGTGTCTTTTGAAAAGGAACACACAGGCAGTTGCAGTATGCTGTGTTTGTCTTCTTCATAGGAAAACAGAAGtgcCATGGAGGAATTTCAGGTGATCGTCCATACCTTACCAGCCCCCACCTCTGGAACATACAGCATCCTACGGCTCACTCTGATTGGCTCAGAGGGTAGCGAAACCCCACCCATCTCAGTGAACGCTGGGGCCAACCAGCACCACCTCCTACCTGGATCCGCCTGTGTGGTCAGAGTGTGGTCACAGGTGGCACTGGGTCGAGTAGTTCTGGTCCGGCTACGGTTGGAGGCTCGGACGGGTTTCCCGGACCTGGACTGGCACTGCAGGGGGGTGGAGGTCCGGAGGCTGTGTGACAGACAGGAGGAAGGGGCGGGGCTACAGCACCAAGGGGCAGAGCACTTCCCTTGTTGCAGGTGGCTCCGGTCTGTAGATGGTGACGTGGAGCTACGGAATGGAGACAtgtgtctGTTGAACTCAGAGACTGTGCAAACACTGAAGGACCACAGACTCAAAGATCTGCACACTAAACAGCAGCACATAAGGTGGCGTACGTTTGCTGAGGGTGTCCCTCACTGTGTGGACATGACCAGTCTGAAGGAACTGGGACCCAACCTCAGCTACACACGCCAAAGCCCAGGCATCAATCTGCAGTATCTAAGGGGTTTTGCTGAGAGAGCTGAATCCTGGAGTAGCTTTACTGAGCTGGAGACCATGTTCAGCCACAATGGGAGCCAGAATACTGTCGCTAAGTATGTGCAGGCCCATTGGGCTGAGGACTGGTTCTTTGGCTACCAGTGTTTGAACGGCTGTAACCCTCTCATGGTGCGACAGACACGCCTCCTCCCTCCCAACCTGTCAATCAACTCTGACATTCTCTGCCCCTTCCTGCCTGACGGATCCTCACTGGAACAGGagctagagAGAGGGTCTATTTTCCTGCTGGACTACGAGATGTTGGAAGGTGTCCCGGCCAACGTGATCAATGGGAAGCAGCAGTTTCTCGCCGCCCCGCTAGTCCTTCTGCACCTCAACCAGGAAGGGGAGCTCAAACCCATCGCCATCCAACTGCAGCAGGCCCCTGGTCCTCAGAACCCAGTGTTCCTGCCCTCTGACCCTGGCCCTGATTGGCTGTTGGCTAAGACCTGGGTGCGCTGCTCAGACTTCCAGTGCCACCAGCTTTCCTCTCACTTCCTCAGAACCCACCTGCTGGGAGAGGTGTGTTGCACTGCCACCCTCAGGCAGCTGCCAGAAGTACACCCTCTACACCAGTTGTTGATGCCTCACataaaaaccacactacagaTCAACATCCAAGCCAGGGCCTCTCTACTGGCTGCCAACGGAGTGTTTGACAAGGCCGTAGGCTGTGGTCTGGAGGCGTTGCCTGTACTGTTGTCTCGAGCCACAGAGCGTCTGCGTTACCGCTCCCTGTGTGTCCCTGACGACCTGGCAGACAGAGGgatacacacactcaaacactgcTACTATGCACATGACGCACTGCGAGTGTGGACCGCACTGCACAGATTTGTGAGTGGCTGGGTGGATGTGTATTACCTTGGAGACCAGGATGTGGAGCAGGACTCTGAACTGCAGAGCTGGATCACTGAGATCTACACACATGGCTTCCTACAGCTCCCTCACTCAGGTTGCCCACAGTCATTCCAAACCAAACCAGAACTCTCTCAGTTTGTTACCATGGTTATATACTGCTGCTCTGCGCTGCACGCTGCTGTCAACTTCTCTCAGGTGGATTTTGACCTGTGGATGCCCAACTGCCCAGCCTCCATGACGCACCCCCCTCCCCAGACCAAAGGCATGTTGACGGAAGACGagattctctccatcctcccggACGTCAACTCCACCTGCAACCTCCTCATCACTCTGTTCCTACTGTCCCAGCCCGCTGCAGACTACGTGCCTCTGTGTCAGTATCGTGAGCCTGTGTTCAGCAGTGGCGCTCCCCGCAGGCTGGTGGAGAAGGTGCAGGCCGAGCTCAGGGCCATTTCTGGTGAGATCACAGACAGGAACAAGAAGTTGGAGCTGCCCTATGACTACATGTCCCCCGACCGCATCGAGAACAGTGTGGCCATCTGAGCTGCTGTGaatacacccacacagacacgcatgcacacacgttATGTTCTATCCTCGTAGGGACCTAAAATTAATTTCCATTCGaagtcctattttccctaaccctcaACTTAAAATAGCCTTTATCCTCGtgattttaggtccccacaaggatagaagtACCAACCAAtccacacatgcatgcacacacagacaagtAGACACACAGACCCCAAGgtgtgcgcacacacagacacttccAGCCACATGCACAAACATAAACGACAGCTTAATAATGatttaactatattaaccacaatgTTTCTTCCGTTTCTATGAATCACGCTTTGAATCACGCAGTTTCTATGAATCACGCTTTGAAGGTGTTAGTGCTGCAGGGGTTTAATGGTTTTGATGAAAAGCAGCTAAACACAGCGATCAGGTAGTTCACACTCCTCTCCTAATATAAACCAGGAATCGACAACAGCTGGCAATAATAccggctgcatctcaatagtatATAGTGGCCTCCTCTCCTATTATCCTGTCCTTTTCTCCTCCATCCTTGCTGAGCAAGAGGTTGACTAGGACAGCTTCCACCTGTCTTGTTTAAAATGATTTCTTTAACATgtctcatccccttcatctacactgattgaagtgaatttaacaagtgatatcaataaaagatgagttttcacctgga

Function

NR:

description
arachidonate 15-lipoxygenase B-like

GO: NA

KEGG:

id description
K15718 LOX1_5; linoleate 9S-lipoxygenase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021570292.2 False 2831 mRNA 0.52 15 69960093 69980350
XR_005037698.1 True 2801 mRNA 0.52 16 69960093 69980350

Neighbor

gene id symbol gene type direction distance location
trnav-aac-6 NA coding downstream 7312 69952709 ~ 69952781 (-)
trnav-aac-5 NA coding downstream 11520 69948501 ~ 69948573 (-)
trnav-aac-4 NA coding downstream 15739 69944282 ~ 69944354 (-)
trnav-aac-3 NA coding downstream 19947 69940074 ~ 69940146 (-)
trnav-aac-2 NA coding downstream 24208 69935813 ~ 69935885 (-)
LOC110494967 LOC106560830 coding upstream 14740 69995090 ~ 70075625 (-)
LOC118941470 LOC106560829 coding upstream 128827 70109177 ~ 70111705 (-)
zgc:158868 LOC106560829 coding upstream 132205 70112555 ~ 70115100 (-)
LOC118937291 NA coding upstream 194566 70174916 ~ 70176643 (-)
LOC110495034 LOC106560827 coding upstream 202146 70182496 ~ 70210312 (-)
G178005 NA non-coding downstream 14666 69927984 ~ 69945427 (-)
G177969 NA non-coding downstream 91296 69867581 ~ 69868797 (-)
G177925 NA non-coding downstream 96709 69831826 ~ 69863384 (-)
G177909 NA non-coding downstream 201108 69758619 ~ 69758985 (-)
G177901 NA non-coding downstream 212119 69747773 ~ 69747974 (-)
G178056 NA non-coding upstream 96827 70077177 ~ 70077507 (-)
G178074 NA non-coding upstream 122792 70103142 ~ 70103632 (-)
G178075 NA non-coding upstream 124324 70104674 ~ 70104899 (-)
G178076 NA non-coding upstream 125004 70105354 ~ 70106158 (-)
G178077 NA non-coding upstream 126176 70106526 ~ 70106743 (-)
LOC110494902 LOC106560839 other downstream 255694 69648833 ~ 69767366 (-)
G177487 NA other downstream 368371 69591135 ~ 69591722 (-)
G174505 NA other downstream 3267243 66692408 ~ 66692850 (-)
G173696 LOC106560906 other downstream 3569327 66375226 ~ 66390766 (-)
G173675 NA other downstream 3621707 66335412 ~ 66338386 (-)
LOC110501848 NA other upstream 580172 70552263 ~ 70642587 (-)
fam169b fam169b other upstream 788808 70769140 ~ 70773282 (-)
G179215 NA other upstream 925022 70905372 ~ 70906254 (-)
ttc23 ttc23 other upstream 946340 70926632 ~ 70945359 (-)
G179310 mef2a other upstream 1017695 70998045 ~ 71070204 (-)

Expression


Co-expression Network