LOC118941470 (LOC106560829)


Basic Information

Item Value
gene id LOC118941470
gene name LOC106560829
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 70109177 ~ 70111705 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036954645.1
AATACTGTTCCCCCCCGCACATACATTACACATAATCATAAGGACAGTGTCAGTGTGGGATAAATTAATTCAATAGGCAGACAGCGACTATGGCGGCTAGGATAGGAGGCAGTGTTCTGGTGACAGGGTCTAACCGGGGAATCGGTCTAGAGCTAGTTCGTCAGCTGGCAGAGTCCACCAGTGCTCCAGCCCAGATCTTTGCCGGGTGTCGAGATCTATATGGAGCTCAGGCACTGAAGGAGCTGGCGCAGAGGCATCCCCAACTGCTCACTATTGTGAGATTGGACGTTGCAGACCCAGTCAGTATATCCGAGGCCTCCAGGGTAGTCGGTGATAAACTGATTGACGGCAGCCTGAATCTGATCATTAACAACGCTGCCATTAATGGCTCTGCCGTGAACAACGGGGATAACCCCTCTGGCACACTGGCAGTGACGGGCAAGAAGGAGATGGTGGATTTGTTTGTCACCAACGCAGTGGGACCCATGCTCATCGCTAAGGAGTTCAGGTCATACCTGCAGAAGGCAGCTGACCAATCAGGTCCTGTGACAACAGGGATGTCCTGTAGCAGGGCAGCCATCATCAACATCTCCACTCTGCTGTCCTCGGTTGAGAAGTGTCGTGAGACTTTCTCCATGGCCCCTATGTATCCTTACAGAGCCAGCAAGGCAGCACTGAACATGCTGACATGTTGCCTGGCAGAGGACTTCCAGAGGGATGGGATTCTGGTCATGGCCATTCACCCTGGCTGGGTGAAAACTGACATGGGAGGCCCAAATGCACCGGTGACGACTGAGGACAGTGCCAAAGGCATTCTGCATGTGATGTCAACCCTCACAGAGAAGCACAATGGCAGCCTTATGGACTGGGAAGGGAATGGTATCCCATGGTGATGTTCCAGGCCAATGGTCCAGTCTCTGGGACCAATAGACTTAGACTTCTGAGTTCTGTGAAAAATCTCTTAGTATGACTGAATATTTTTTTGTCTTCCTAAAGGCGAGTTTGTAATCTGTAATTTCATTTTTCATTCGGATTCAATTTCTTAACTCAATAAACTGACTGCAAGACTCTCATTGA

Function

NR:

description
uncharacterized protein LOC110495012

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036954645.1 True 1077 mRNA 0.50 6 70109177 70111705

Neighbor

gene id symbol gene type direction distance location
LOC110494967 LOC106560830 coding downstream 33552 69995090 ~ 70075625 (-)
zgc:152891 LOC106560831 coding downstream 128827 69960093 ~ 69980350 (-)
trnav-aac-6 NA coding downstream 156396 69952709 ~ 69952781 (-)
trnav-aac-5 NA coding downstream 160604 69948501 ~ 69948573 (-)
trnav-aac-4 NA coding downstream 164823 69944282 ~ 69944354 (-)
zgc:158868 LOC106560829 coding upstream 850 70112555 ~ 70115100 (-)
LOC118937291 NA coding upstream 63211 70174916 ~ 70176643 (-)
LOC110495034 LOC106560827 coding upstream 70791 70182496 ~ 70210312 (-)
LOC110495228 LOC106560819 coding upstream 290933 70402638 ~ 70546729 (-)
LOC118944152 NA coding upstream 428849 70540554 ~ 70540609 (-)
G178078 NA non-coding downstream 1938 70106981 ~ 70107239 (-)
G178077 NA non-coding downstream 2434 70106526 ~ 70106743 (-)
G178076 NA non-coding downstream 3019 70105354 ~ 70106158 (-)
G178075 NA non-coding downstream 4278 70104674 ~ 70104899 (-)
G178074 NA non-coding downstream 5545 70103142 ~ 70103632 (-)
G178088 NA non-coding upstream 11149 70122854 ~ 70123109 (-)
G178227 NA non-coding upstream 68666 70180371 ~ 70274289 (-)
G178301 NA non-coding upstream 163941 70275646 ~ 70276513 (-)
G178306 NA non-coding upstream 171896 70283601 ~ 70283909 (-)
LOC110494902 LOC106560839 other downstream 404778 69648833 ~ 69767366 (-)
G177487 NA other downstream 517455 69591135 ~ 69591722 (-)
G174505 NA other downstream 3416327 66692408 ~ 66692850 (-)
G173696 LOC106560906 other downstream 3718411 66375226 ~ 66390766 (-)
G173675 NA other downstream 3770791 66335412 ~ 66338386 (-)
LOC110501848 NA other upstream 448817 70552263 ~ 70642587 (-)
fam169b fam169b other upstream 657453 70769140 ~ 70773282 (-)
G179215 NA other upstream 793667 70905372 ~ 70906254 (-)
ttc23 ttc23 other upstream 814985 70926632 ~ 70945359 (-)
G179310 mef2a other upstream 886340 70998045 ~ 71070204 (-)

Expression


Co-expression Network