zgc:158868 (LOC106560829)


Basic Information

Item Value
gene id zgc:158868
gene name LOC106560829
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 70112555 ~ 70115100 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036954652.1
GCCTAATGCATGGCACAGAGCACTGAAGGAGCTGGCGCAGAGGCATCCCCAACTGCTCACTATTGTGAGATTGGACGTTGCAGACCCAGTCAGTATATCCGAGGCCTCCAGGGTAGTCGGTGATAAACTGATTGACGGCAGCCTGAATCTGATCATTAACAACGCTGCCATTAATGGCTCTGCCGTGAACAACGGGAATAACCCCCCTGGCACACTGGCAGTGACGGGCAAGAAGGAGATGGTGGATTTGTTTGTCACCAACGCAGTGGGACCCATGCTCATCGCTAAGGAGTTCAGGTCATACCTGCAGAAGGCAGCTGACCAATCAGGTCCTGTGACAACAGGGATGTCCTGTAGCAGGGCAGCCATCATCAACATCTCCACTCTGCTGTCCTCGGTTGAGAAGTGTCGTGAGACTTTCTCCATGGCCCCTATGTATCCTTACAGAGCCAGCAAGGCAGCACTGAACATGCTGACATGTTGCCTGGCAGAGGACTTCCAGAGGGATGGGATTCTGGTCATGGCCATTCACCCTGGCTGGGTGAAAACTGACATGGGAGGCCCAAATGCACCGGTGACGACTGAGGACAGTGCCAAAGGCATTCTGCATGTGATGTCAACCCTCACAGAGAAGCACAATGGCAGCCTTATGGACTGGGAAGGGAATGGTATCCCATGGTGATGTTCCAGGCCAATGGTCCAGTCTCTGGGACCAATAGACTTAGACTTCTGAGTTCTGTGAAAAATCTCTTACTATGACTGAATATTTTTTTGTCTTCCTAAAGGCGAGTTTGTAATCTGTAATTTCATTTTTCATTCGGATTCAATTTCTTAACTCAATAAACTGACTGCAAGACTCTCA
>XM_021570364.2
ACTCTAAATACTGTTCCCCCCCGCACATACATTACACATAATCATAAGGACAGTGTCAGTGTGGGATAAATTAATTCAATAGGCAGACAGCGACTATGGCGGCTAGGATAGGAGGCAGTGTTCTGGTGACAGGGTCTAACCGGGGAATCGGTCTAGAGCTAGTCCGTCAGCTGGCAGAGTCCACCAGTGCTCCAGCCCAGATCTTTGCCGCGTGTCGAGATCTATATGGAGCTCAGGCACTGAAGGAGCTGGCGCAGAGGCATCCCCAACTGCTCACTATTGTGAGATTGGACGTTGCAGACCCAGTCAGTATATCCGAGGCCTCCAGGGTAGTCGGTGATAAACTGATTGACGGCAGCCTGAATCTGATCATTAACAACGCTGCCATTAATGGCTCTGCCGTGAACAACGGGAATAACCCCCCTGGCACACTGGCAGTGACGGGCAAGAAGGAGATGGTGGATTTGTTTGTCACCAACGCAGTGGGACCCATGCTCATCGCTAAGGAGTTCAGGTCATACCTGCAGAAGGCAGCTGACCAATCAGGTCCTGTGACAACAGGGATGTCCTGTAGCAGGGCAGCCATCATCAACATCTCCACTCTGCTGTCCTCGGTTGAGAAGTGTCGTGAGACTTTCTCCATGGCCCCTATGTATCCTTACAGAGCCAGCAAGGCAGCACTGAACATGCTGACATGTTGCCTGGCAGAGGACTTCCAGAGGGATGGGATTCTGGTCATGGCCATTCACCCTGGCTGGGTGAAAACTGACATGGGAGGCCCAAATGCACCGGTGACGACTGAGGACAGTGCCAAAGGCATTCTGCATGTGATGTCAACCCTCACAGAGAAGCACAATGGCAGCCTTATGGACTGGGAAGGGAATGGTATCCCATGGTGATGTTCCAGGCCAATGGTCCAGTCTCTGGGACCAATAGACTTAGACTTCTGAGTTCTGTGAAAAATCTCTTACTATGACTGAATATTTTTTTGTCTTCCTAAAGGCGAGTTTGTAATCTGTAATTTCATTTTTCATTCGGATTCAATTTCTTAACTCAATAAACTGACTGCAAGACTCTCA

Function

NR:

description
uncharacterized protein LOC110495012

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036954652.1 False 862 mRNA 0.50 6 70112555 70114804
XM_021570364.2 True 1079 mRNA 0.50 6 70112555 70115100

Neighbor

gene id symbol gene type direction distance location
LOC118941470 LOC106560829 coding downstream 850 70109177 ~ 70111705 (-)
LOC110494967 LOC106560830 coding downstream 36930 69995090 ~ 70075625 (-)
zgc:152891 LOC106560831 coding downstream 132205 69960093 ~ 69980350 (-)
trnav-aac-6 NA coding downstream 159774 69952709 ~ 69952781 (-)
trnav-aac-5 NA coding downstream 163982 69948501 ~ 69948573 (-)
LOC118937291 NA coding upstream 59816 70174916 ~ 70176643 (-)
LOC110495034 LOC106560827 coding upstream 67396 70182496 ~ 70210312 (-)
LOC110495228 LOC106560819 coding upstream 287538 70402638 ~ 70546729 (-)
LOC118944152 NA coding upstream 425454 70540554 ~ 70540609 (-)
LOC110501848 NA coding upstream 437163 70552263 ~ 70642587 (-)
G178078 NA non-coding downstream 5316 70106981 ~ 70107239 (-)
G178077 NA non-coding downstream 5812 70106526 ~ 70106743 (-)
G178076 NA non-coding downstream 6397 70105354 ~ 70106158 (-)
G178075 NA non-coding downstream 7656 70104674 ~ 70104899 (-)
G178074 NA non-coding downstream 8923 70103142 ~ 70103632 (-)
G178088 NA non-coding upstream 7754 70122854 ~ 70123109 (-)
G178227 NA non-coding upstream 65271 70180371 ~ 70274289 (-)
G178301 NA non-coding upstream 160546 70275646 ~ 70276513 (-)
G178306 NA non-coding upstream 168501 70283601 ~ 70283909 (-)
LOC110494902 LOC106560839 other downstream 408156 69648833 ~ 69767366 (-)
G177487 NA other downstream 520833 69591135 ~ 69591722 (-)
G174505 NA other downstream 3419705 66692408 ~ 66692850 (-)
G173696 LOC106560906 other downstream 3721789 66375226 ~ 66390766 (-)
G173675 NA other downstream 3774169 66335412 ~ 66338386 (-)
fam169b fam169b other upstream 654058 70769140 ~ 70773282 (-)
G179215 NA other upstream 790272 70905372 ~ 70906254 (-)
ttc23 ttc23 other upstream 811590 70926632 ~ 70945359 (-)
G179310 mef2a other upstream 882945 70998045 ~ 71070204 (-)

Expression


Co-expression Network