LOC118937291


Basic Information

Item Value
gene id LOC118937291
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 70174916 ~ 70176643 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005034535.1
cctccctcatgtggtacccttcctgcaggttcaATTGTGCGTCAATAATTCAGCatagcaagtttgtatgaaggtctggttattAAATGGGTAAATAGTTCAATAGTAATGTGCTCTAAAACGCTCTGTTGACAAACACACTTTGCTGCCCTGTTTCCAATTGTCCACAAGGCTGGGtgaacctattcaagtaagtcaatacattttgaaaatgtaaaaaaactttaattagctaacgttacagtacaggctaactcaaatgagctgctaaaTGAGCTAACTTAGCTAGTTGACTATCTAGCTATCTAACCAACTTGACATACTGTATAGATAGATAGCTAAGTTAATGAAATATCACCAGCTACCTAActaaatattagctagctatcttgatgtaaaaaacaaactccaaatgcatttgtaggtagctagctaacagccatggaGGAGGGTGTAAGGATAACATTAACATTAGTAGTCCCAACTTTCAATGTGAGAGAGAAGGCTATTCTGGATAGGGTAGGTACtagtaacataataataataactagtAACATAGATAATAGTAACATAATATTCAGTGCAGTGTAATTTGAGTATAATGAAGTCTGTTTCTTGTGAGGTTTTCTGTCCTCGGATAAAGAAGGCTATGAAAGCCTGTCTACAGATGAAGAGGTCTCAATGAAGAGCAGTGGTTcgcagtcctggtcctggggactcagagctgtgtcggtGAACACCTCCCACATCTGAACTGGCTACAAGAGGGCACAGCATGACCATAGgtatgttttgatgtgagagaggacgccaacccccagtcccatcatcgccacctcacccgctcttaagataaccttcgggccgactgggagcccaaggctggttaggagacaccactagagacactattatgtaattgtgatgaactgagagaatattagggtagcgcTGTGATTAATCATATGCTGCCTTTTCTGCTCCTATGTTCATACCTCTTTCCCTTTTTTATACACCTCTCTCGccacctctttcttcctctgtttttataatgcacaacagatgtgcattgaagtaaAGTATGAATTTATAACACTTGGATAATGAACTTCCAATAAAGCatttcacattctctactggttgaaattaagtctcATTTGATGAAATACTACACCTATCCTGTGTTTATCAGATCAATGCAGATTAAGGAAATTAGATATCGAAATG
>TU202497
CATGTTTTTCggcataaagtactctgtagaGACCAGATGAGGCCACACATACAGATTAATGTTGAACACTCTCTTTAACtaccttattttctcaataacagtctctctccttcacttcatccctctctccccttctccctaaatcatttcggttatatcagctgtgtcggtGAACACCTCCCACATCTGAACTGGCTACAAGAGGGCACAGCATGACCATAGgtatgttttgatgtgagagaggacgccaacccccagtcccatcatcgccacctcacccgctcttaagataaccttcgggccgactgggagcccaaggctggttaggagacaccacta

Function

NR:

description
PREDICTED: tRNA (guanine(26)-N(2))-dimethyltransferase isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005034535.1 False 1227 mRNA 0.39 3 70174916 70176643
TU202497 True 339 lncRNA 0.48 2 70175241 70175794

Neighbor

gene id symbol gene type direction distance location
zgc:158868 LOC106560829 coding downstream 59816 70112555 ~ 70115100 (-)
LOC118941470 LOC106560829 coding downstream 63211 70109177 ~ 70111705 (-)
LOC110494967 LOC106560830 coding downstream 99291 69995090 ~ 70075625 (-)
zgc:152891 LOC106560831 coding downstream 194566 69960093 ~ 69980350 (-)
trnav-aac-6 NA coding downstream 222135 69952709 ~ 69952781 (-)
LOC110495034 LOC106560827 coding upstream 5853 70182496 ~ 70210312 (-)
LOC110495228 LOC106560819 coding upstream 225995 70402638 ~ 70546729 (-)
LOC118944152 NA coding upstream 363911 70540554 ~ 70540609 (-)
LOC110501848 NA coding upstream 375620 70552263 ~ 70642587 (-)
chka LOC106560813 coding upstream 536546 70713189 ~ 70733880 (-)
G178088 NA non-coding downstream 51807 70122854 ~ 70123109 (-)
G178078 NA non-coding downstream 67677 70106981 ~ 70107239 (-)
G178077 NA non-coding downstream 68173 70106526 ~ 70106743 (-)
G178076 NA non-coding downstream 68758 70105354 ~ 70106158 (-)
G178075 NA non-coding downstream 70017 70104674 ~ 70104899 (-)
G178227 NA non-coding upstream 3728 70180371 ~ 70274289 (-)
G178301 NA non-coding upstream 99003 70275646 ~ 70276513 (-)
G178306 NA non-coding upstream 106958 70283601 ~ 70283909 (-)
G178335 NA non-coding upstream 149192 70325835 ~ 70327350 (-)
G178349 NA non-coding upstream 176995 70353638 ~ 70354068 (-)
LOC110494902 LOC106560839 other downstream 470517 69648833 ~ 69767366 (-)
G177487 NA other downstream 583194 69591135 ~ 69591722 (-)
G174505 NA other downstream 3482066 66692408 ~ 66692850 (-)
G173696 LOC106560906 other downstream 3784150 66375226 ~ 66390766 (-)
G173675 NA other downstream 3836530 66335412 ~ 66338386 (-)
fam169b fam169b other upstream 592515 70769140 ~ 70773282 (-)
G179215 NA other upstream 728729 70905372 ~ 70906254 (-)
ttc23 ttc23 other upstream 750047 70926632 ~ 70945359 (-)
G179310 mef2a other upstream 821402 70998045 ~ 71070204 (-)

Expression


Co-expression Network