LOC110495034 (LOC106560827)


Basic Information

Item Value
gene id LOC110495034
gene name LOC106560827
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 70182496 ~ 70210312 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021570386.2
AAAAATGACCAAAGAGGGGTTCGGAGCGGGTCTTCTGTAGTCGATTCTGAAAATCTTTCGAGCGAATAGCCCTGTATTCAACTACAGTACCCACACGTCACTGTCAGTCCTACTCGAGAGCGTTGGTTAGTCAGGGATATCACACCActgtctatctcactctccccctGTATCAACGCATTGACATAGCTAGTAGaagacaataaaaaataaaacatttcaagcCGAAGATGGCAGAGCTTGGAGCGGGGAGCCTGCTGTTGGGGGATCCTGCTTTTAATTACCAAGAAGCCGAGCTAAATGAACGATTGAAGCGGCTCTACCCGGCCGTAAATGAGGATGAGACCCCCTTACCCCGATCATGGAGCCCCAAGGATAAATACAGCTACATCGGGCTCTCACAGAACAATCTGCGGGTGCATTACAAAGGTCATGGGAAGAATCACAAGGATGCCGCGTCTGTGCGTGCCACTCATCCCATACCAGCCGCCTGTGGGATCTACTACTTTGAAGTGAAGATTGTCAGCAAGGGCAGGGATGGGTACATGGGGATTGGTCTGTCTGCCCAGGGAGTCAACATGAACAGACTGCCTGGTTGGGACAAGCACTCGTATGGTTACCACGGTGACGATGGACACTCCTTCTGCTCTTCAGGGACTGGCCAACCATATGGCCCAACCTTCACCACTGGCGATGTGATTGGTTGCTGTGTGAACCTAATTAACAACACCTGTTTCTACACCAAGAATGGCATCAGTCTAGGTGTAGCATTTACAGACCTCCCTCCAAACCTGTACCCCACAGTGGGCCTGCAGACTCCTGGAGAGATTGTGGATGCTAACTTTGGCCAGCAGCCCTTTGTGTTTGACATTGAGGACTATATGAGTGAATGGAGGGCTAAGATCCATGGCATGATCGCCCGCTTCCCTATCGGCGAGAGACTGGGGGAGTGGCAGGCAGTGCTGCAGAATATGGTATCCACCTACCTGGTGCATCATGGGTACTGTGCTACGGCCACAGCCTTCGCCAGGGCCACAGAGACCTTGATCCAGGAGGACCAGACCTCCATAAAGAACCGGCAGAGAATACAGAAGCTGGTATTGGCAGGGCGTGTTGGAGAGGCCATCGAAGCCACACAGCAGCTGTACCCTGGACTTCTAGAACACAACCCCAATCTACTCTTCATGTTGAAGTGTCGGCAGTTTGTGGAGATGGTGAACGGTACAGACAGTGAGGTACGATGCTTTAGTATCCGCTCCCCCAAGTCCCAGGACAGCTACCCTGGCTCCCCCAGCCTGAGCCCCCGACATGGAGCCACTAACCCCAATCTGCACAGTGCAGGAGCAGACAGCCCCACATGCAGTAACGGGGTCACCCCTCCCAACAAGAACAAGAGCCACAACAAGTATCCAGGCGTCagctctgcctcctcctcctcttcttcctccccttcctctgtcaATTACTCTGAGTCCAACTCCACTGACTCCACCAAGTCCCAGCCTCACAGTGGCACCAGCAACCAGGAGGAGACCAGGTGTGTGGCAAGTGACAGTGAGATGGAGATCGAGGCTGAGCACTACACTAACGGGGTGGCAGAGAACCCCTCTGCTCGGATCATGAATGGCACTTACAAGCACCAGGAAATCCTGCAGGCTCAGGACATCAGCCTGGGTAACGGAGTGGCAGAGGATAGCTGTGCCTCCAGACAGCTGTGTGGAGGGAACCAAGCAGCCACAGAGAGGATGATCCAGTTTGGCCGTGAACTGCAGGGCCTCAACGAGCAGCTGTGCCGTGAATACGGCAAGAACGTCACACACAAGAAGATGCTGCAGGATGCCTTCAGTTTATTAGCATATTCGGATCCCTGGAACTGCCCAGTGGGGCAACAGCTAGACCCAATGCAGAGAGAGAATATCTGCTCTGCTCTTAACAGCGCCATCTTGGAGTCTCAGAACTTGCCTAAGCAGCCCCCTCTGATGCTTGCTCTGGGTCAGGCCACAGAGTGTGTCCAGCTCATGGCCAGGGTCCGCTCAGGGTCCTGTTCCTTCGCCAGAGTAGACAACTTTTTGCACTAGCCCCAGTCCAGGCAATGTTCAGGACTAAGAAGAGGTCTTTCCAATGGGTTGCCAGATGACTGAGGAAAGCATGTGTTTGAATTTGTGTGTCGCTTGCCATTTGGCAGAAGCAGATGGACAGGGGAATGAGTAGAACATGACAGGaaagtttatttttaatttagtATTATCAAATACAAAATGTGTGACTCTATTTAAAGAATTCATTATTATTCTGTTTATCTAGTCATGTTCTAGGTTTTATTTAGTCAGTTTGTTGTGCTCATCTTGGaaggaaaaaaaatctaattccgTTTTTGTTTTTGAGTGGATTTCAATTCCCTACACAGTGTTTTAAAGATGTTCATCATATCAAAGAAGTTCATGTTGGCATGCTTTGTCGTTACCAAGCAAGATACTCTGGTTTCTTTCATTCAGAACTCAGGTATTCACAGCACATTTGTCATTTCAGTTTGGGATATTGTAGACAGAGGTAGGTTTACCCAGCTGTTCAGTGGCTCCAATTTAGGACCTTCATTTTTTTGGTTCAAATTCTTACTACTTAGTATGACTTAACTCCAGAAGCTAATTTAATTTAAAGTTAAAGGTCTGAATTGGCTTCTGAAAGTACACATGGCTATAAGCCACTAACCTGCTGGTCACCTCAGAGCCCCATACAGCAGCATTCACCTCAGATCAAACAATGATGACACTGATTCATTTGTGAGTTTTAATATAAGTGTAGTATATTTCCAATCAAGTGTCTCCACTAGTTTGATTTGTAACCTACAGTAAAaatacacagacatacagtactgtGGGGAATTTGGAAATCACTCTCTGGTTTTTGACTTGCTAATTATATTGAAGATATGAAGTCTGacgttgaatatatatatatatacacacacaatttaATGATATATTCAATAAAAAAGTTAAACTGA
>XM_021570394.2
AAAAATGACCAAAGAGGGGTTCGGAGCGGGTCTTCTGTAGTCGATTCTGAAAATCTTTCGAGCGAATAGCCCTGTATTCAACTACAGTACCCACACGTCACTGTCAGTCCTACTCGAGAGCGTTGGTTAGTCAGGGATATCACACCActgtctatctcactctccccctGTATCAACGCATTGACATAGCTAGTAGaagacaataaaaaataaaacatttcaagcCGAAGATGGCAGAGCTTGGAGCGGGGAGCCTGCTGTTGGGGGATCCTGCTTTTAATTACCAAGAAGCCGAGCTAAATGAACGATTGAAGCGGCTCTACCCGGCCGTAAATGAGGATGAGACCCCCTTACCCCGATCATGGAGCCCCAAGGATAAATACAGCTACATCGGGCTCTCACAGAACAATCTGCGGGTGCATTACAAAGGTCATGGGAAGAATCACAAGGATGCCGCGTCTGTGCGTGCCACTCATCCCATACCAGCCGCCTGTGGGATCTACTACTTTGAAGTGAAGATTGTCAGCAAGGGCAGGGATGGGTACATGGGGATTGGTCTGTCTGCCCAGGGAGTCAACATGAACAGACTGCCTGGTTGGGACAAGCACTCGTATGGTTACCACGGTGACGATGGACACTCCTTCTGCTCTTCAGGGACTGGCCAACCATATGGCCCAACCTTCACCACTGGCGATGTGATTGGTTGCTGTGTGAACCTAATTAACAACACCTGTTTCTACACCAAGAATGGCATCAGTCTAGGTGTAGCATTTACAGACCTCCCTCCAAACCTGTACCCCACAGTGGGCCTGCAGACTCCTGGAGAGATTGTGGATGCTAACTTTGGCCAGCAGCCCTTTGTGTTTGACATTGAGGACTATATGAGTGAATGGAGGGCTAAGATCCATGGCATGATCGCCCGCTTCCCTATCGGCGAGAGACTGGGGGAGTGGCAGGCAGTGCTGCAGAATATGGTATCCACCTACCTGGTGCATCATGGGTACTGTGCTACGGCCACAGCCTTCGCCAGGGCCACAGAGACCTTGATCCAGGAGGACCAGACCTCCATAAAGAACCGGCAGAGAATACAGAAGCTGGTATTGGCAGGGCGTGTTGGAGAGGCCATCGAAGCCACACAGCAGCTGTACCCTGGACTTCTAGAACACAACCCCAATCTACTCTTCATGTTGAAGTGTCGGCAGTTTGTGGAGATGGTGAACGGTACAGACAGTGAGGTACGATGCTTTAGTATCCGCTCCCCCAAGTCCCAGGACAGCTACCCTGGCTCCCCCAGCCTGAGCCCCCGACATGGAGCCACTAACCCCAATCTGCACAGTGCAGGAGCAGACAGCCCCACATGCAGTAACGGGGTCACCCCTCCCAACAAGAACAAGAGCCACAACAAGTATCCAGGCGTCagctctgcctcctcctcctcttcttcctccccttcctctgtcaATTACTCTGAGTCCAACTCCACTGACTCCACCAAGTCCCAGCCTCACAGTGGCACCAGCAACCAGGAGGAGACCAGTGACAGTGAGATGGAGATCGAGGCTGAGCACTACACTAACGGGGTGGCAGAGAACCCCTCTGCTCGGATCATGAATGGCACTTACAAGCACCAGGAAATCCTGCAGGCTCAGGACATCAGCCTGGGTAACGGAGTGGCAGAGGATAGCTGTGCCTCCAGACAGCTGTGTGGAGGGAACCAAGCAGCCACAGAGAGGATGATCCAGTTTGGCCGTGAACTGCAGGGCCTCAACGAGCAGCTGTGCCGTGAATACGGCAAGAACGTCACACACAAGAAGATGCTGCAGGATGCCTTCAGTTTATTAGCATATTCGGATCCCTGGAACTGCCCAGTGGGGCAACAGCTAGACCCAATGCAGAGAGAGAATATCTGCTCTGCTCTTAACAGCGCCATCTTGGAGTCTCAGAACTTGCCTAAGCAGCCCCCTCTGATGCTTGCTCTGGGTCAGGCCACAGAGTGTGTCCAGCTCATGGCCAGGGTCCGCTCAGGGTCCTGTTCCTTCGCCAGAGTAGACAACTTTTTGCACTAGCCCCAGTCCAGGCAATGTTCAGGACTAAGAAGAGGTCTTTCCAATGGGTTGCCAGATGACTGAGGAAAGCATGTGTTTGAATTTGTGTGTCGCTTGCCATTTGGCAGAAGCAGATGGACAGGGGAATGAGTAGAACATGACAGGaaagtttatttttaatttagtATTATCAAATACAAAATGTGTGACTCTATTTAAAGAATTCATTATTATTCTGTTTATCTAGTCATGTTCTAGGTTTTATTTAGTCAGTTTGTTGTGCTCATCTTGGaaggaaaaaaaatctaattccgTTTTTGTTTTTGAGTGGATTTCAATTCCCTACACAGTGTTTTAAAGATGTTCATCATATCAAAGAAGTTCATGTTGGCATGCTTTGTCGTTACCAAGCAAGATACTCTGGTTTCTTTCATTCAGAACTCAGGTATTCACAGCACATTTGTCATTTCAGTTTGGGATATTGTAGACAGAGGTAGGTTTACCCAGCTGTTCAGTGGCTCCAATTTAGGACCTTCATTTTTTTGGTTCAAATTCTTACTACTTAGTATGACTTAACTCCAGAAGCTAATTTAATTTAAAGTTAAAGGTCTGAATTGGCTTCTGAAAGTACACATGGCTATAAGCCACTAACCTGCTGGTCACCTCAGAGCCCCATACAGCAGCATTCACCTCAGATCAAACAATGATGACACTGATTCATTTGTGAGTTTTAATATAAGTGTAGTATATTTCCAATCAAGTGTCTCCACTAGTTTGATTTGTAACCTACAGTAAAaatacacagacatacagtactgtGGGGAATTTGGAAATCACTCTCTGGTTTTTGACTTGCTAATTATATTGAAGATATGAAGTCTGacgttgaatatatatatatatacacacacaatttaATGATATATTCAATAAAAAAGTTAAACTGA

Function

NR:

description
PREDICTED: ran-binding protein 10-like isoform X2

GO:      GO:0008536

KEGG:

id description
K23334 RANBP9_10, RANBPM; Ran-binding protein 9/10

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021570386.2 False 3004 mRNA 0.48 15 70182496 70210312
XM_021570394.2 True 2992 mRNA 0.48 15 70182496 70210312

Neighbor

gene id symbol gene type direction distance location
LOC118937291 NA coding downstream 5853 70174916 ~ 70176643 (-)
zgc:158868 LOC106560829 coding downstream 67396 70112555 ~ 70115100 (-)
LOC118941470 LOC106560829 coding downstream 70791 70109177 ~ 70111705 (-)
LOC110494967 LOC106560830 coding downstream 106871 69995090 ~ 70075625 (-)
zgc:152891 LOC106560831 coding downstream 202146 69960093 ~ 69980350 (-)
LOC110495228 LOC106560819 coding upstream 192326 70402638 ~ 70546729 (-)
LOC118944152 NA coding upstream 330242 70540554 ~ 70540609 (-)
LOC110501848 NA coding upstream 341951 70552263 ~ 70642587 (-)
chka LOC106560813 coding upstream 502877 70713189 ~ 70733880 (-)
kmt5b LOC106560809 coding upstream 523865 70734177 ~ 70741635 (-)
G178088 NA non-coding downstream 59387 70122854 ~ 70123109 (-)
G178078 NA non-coding downstream 75257 70106981 ~ 70107239 (-)
G178077 NA non-coding downstream 75753 70106526 ~ 70106743 (-)
G178076 NA non-coding downstream 76338 70105354 ~ 70106158 (-)
G178301 NA non-coding upstream 65334 70275646 ~ 70276513 (-)
G178306 NA non-coding upstream 73289 70283601 ~ 70283909 (-)
G178335 NA non-coding upstream 115523 70325835 ~ 70327350 (-)
G178349 NA non-coding upstream 143326 70353638 ~ 70354068 (-)
G178356 NA non-coding upstream 157167 70367479 ~ 70369087 (-)
LOC110494902 LOC106560839 other downstream 478097 69648833 ~ 69767366 (-)
G177487 NA other downstream 590774 69591135 ~ 69591722 (-)
G174505 NA other downstream 3489646 66692408 ~ 66692850 (-)
G173696 LOC106560906 other downstream 3791730 66375226 ~ 66390766 (-)
G173675 NA other downstream 3844110 66335412 ~ 66338386 (-)
fam169b fam169b other upstream 558846 70769140 ~ 70773282 (-)
G179215 NA other upstream 695060 70905372 ~ 70906254 (-)
ttc23 ttc23 other upstream 716378 70926632 ~ 70945359 (-)
G179310 mef2a other upstream 787733 70998045 ~ 71070204 (-)

Expression


Co-expression Network