LOC110495172


Basic Information

Item Value
gene id LOC110495172
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 70370993 ~ 70377931 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021570505.2
TCTCTGTTGCTGCTGAATGATGATGGTTAGCTATCTGAACGTCAGTGTTCTGCGGCTGTGAAGTTATTGCTTTTGTTTGAGACCAAGCCAGCTACCAATCTCATACAATATTATATCAAATGATTCAGGCTGGCAAATTAAAAttcccagttgttttgaaagcaccgtAAGTCTAGAGAATGCCAACTTTGACCAAGTCTGATGACAGAATTTGCCCACGGCGGACCGccatgccaccttcctgttcaagtgagcacatcacaacaagCGCCGGACCCTGGGGAACCCTGCAACAATGACACCCGCTGGACCCAGAAGTGTCAGTCGTCCCGGCCGCTGCACCGGACTAGCCTGTCTCTGGCCTTGGGCTTCTGGCACGCCACGGGCCGCCACTCCAGCCGAAGGCTAATGAGAGCCATCCCCCGACACGTGGCCCAGATACTGCAGGCTGATGTCCTCTGGCAATTGGGACACACCGGGCTGGGACATGGTACTTTTGTGGCAGGGGTCATTACCAGCATGCGAGAGTGCCAGGGCTTTGCCCCTGACTCTGAGCTTCAGAGTGTTCACCCAACAATCAGgTTTGGGAGCTGA

Function

NR:

description
membrane-bound transcription factor site-1 protease-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021570505.2 True 594 mRNA 0.54 5 70370993 70377931

Neighbor

gene id symbol gene type direction distance location
LOC110495161 LOC106560821 coding upstream 6479 70353655 ~ 70364514 (+)
LOC110495151 LOC106560823 coding upstream 49996 70294521 ~ 70320997 (+)
LOC110495093 LOC106560824 coding upstream 79684 70251554 ~ 70291309 (+)
LOC110495070 nutf2 coding upstream 134247 70219253 ~ 70236746 (+)
LOC110495051 tsnaxip1 coding upstream 152084 70210505 ~ 70218909 (+)
LOC110501837 LOC106573750 coding downstream 182 70378113 ~ 70388843 (+)
slc38a8a LOC106560818 coding downstream 17078 70395009 ~ 70402552 (+)
LOC110495269 LOC106573753 coding downstream 270732 70648663 ~ 70656952 (+)
LOC110495285 LOC106560817 coding downstream 288703 70666634 ~ 70679760 (+)
got2a LOC106560816 coding downstream 307794 70685725 ~ 70690817 (+)
G178178 NA non-coding upstream 1904 70367393 ~ 70369089 (+)
G178201 NA non-coding upstream 26733 70344059 ~ 70344260 (+)
G178195 NA non-coding upstream 33848 70336906 ~ 70337145 (+)
G178194 NA non-coding upstream 34458 70336212 ~ 70336535 (+)
G178113 nutf2 non-coding upstream 134193 70211066 ~ 70236800 (+)
G178361 NA non-coding downstream 1471 70379402 ~ 70379791 (+)
G178368 NA non-coding downstream 2244 70380175 ~ 70380404 (+)
G178373 NA non-coding downstream 16340 70394271 ~ 70394470 (+)
G178383 NA non-coding downstream 34541 70412472 ~ 70413225 (+)
G177812 NA other upstream 257553 70107286 ~ 70113440 (+)
G177067 NA other upstream 913560 69456558 ~ 69457433 (+)
G176725 lonp2 other upstream 1413107 68956263 ~ 68957886 (+)
G176612 LOC100846954 other upstream 1509625 68860838 ~ 68861368 (+)
hsbp1b LOC106561110 other upstream 2882792 67486128 ~ 67488205 (+)
igf1ra igf1r other downstream 417479 70794530 ~ 70905277 (+)
LOC110495604 LOC106573778 other downstream 1681786 72059717 ~ 72065199 (+)
LOC110533853 LOC106561194 other downstream 1875507 72250884 ~ 72253809 (+)
G181995 NA other downstream 2963449 73341380 ~ 73342277 (+)
LOC110501876 LOC106561170 other downstream 3198834 73456669 ~ 73580075 (+)

Expression

LOC110495172 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 3.
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LOC110495172 Expression in each Bioproject

Bar chart with 17 bars.
LOC110495172 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 30.
End of interactive chart.

Co-expression Network