LOC110495228 (LOC106560819)


Basic Information

Item Value
gene id LOC110495228
gene name LOC106560819
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 70402638 ~ 70546729 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021570520.2
agggagggattgcCCCCATAACGCTCAACATGAACGCTCCGCGGCAAAAGGATGTGTGAGCAAGCAGCGCGCTACTGCAGGGACGGTGTCCACAAACTGCTCCAAAAAGAACAACCGAAACTCCGGGCTCAGGACAGCAAAGAACAACCAAAACCCGTGGCCGAGGAAAGCGAGTCAGCGACGGCTGCACAGTCTGGAAACAGCGGCGCCCAGCCCGGTGGAATTGACGGGCTCGTCCGCTGGATAGTCACCAAGATGAGCGACAACAAAAGCATCTCTACCCGGGAATACGCGAAGGAGGAGGCAGCGGTTGCCCAAGAGCAGTTCTTCGCACCAGAGCCACGGAAAGGCATCTCTGTAATATTGGATATTTTCCGGAGAGCTGATAAGGATGATGATGGGAAGCTATCTCTGGACGAGTTCCAGGCATTCTTCTCCGACGGGACGCTGAACGAGGAAGAACTGGAGAATCTGTTTCACACAATTGACTCTGATAACACCAGTAATGTTGACACTAAGGAACTCTGTGACTACTTTGCCAAACACATGGGTGACTATGAGGGTGTACTGGCCTCCCTGGAGACTCTCAACCTGTCCATCCTCAGAGCCATGGACTTCACCAAAAAGGTGTATGAACGAGGGACCAATGTGGAGCAATTTGTTACCCGCTTCCTGTTGAAGGAATCAGCCAATCAGATCCATTCTCTGCTGAACTCGGTGGAGAGTGCTGTGGACGCTATTGACGAGCAGCACTGTAGTCAGTCAGGGTACCCTTCTAAGGTCAGTCAACAGGTTCCAGAGAAATGTTATGAGAACCCAGTGCCTGACTACCCTCCTAACAACAGAGTCAGTGCTGCCAAGGATGCTGCCCCAAGGAACATCAACACTGCTACAGGGGTGGTGGAGGTAAGGAAAGAGACGCTGGAGGCACAGATCAACCGACTAGCTGAGCTAATTGGACGCCTTGAGAACAAGACAGTTTGGTTTGACCTGCATCAGAGGCTAACAGACACTGATGGCACAGCCAGCGCATCTCTGTACCTGATTCGTCAGGAAATGACGGTATCCCAGAAGCAGCTGGGAGAATTCTGTGAGGCCCTGAAGCAGTAcctgaagaatgtctctgctgaaAGAGACTGCTTCCATGTGACTGCAGTGCGGCTGCCAGATGGGCTCTCCTTCGTGGTGTATGAGTtctgggatggagaggaggagtggaaaaAGCACCTCCAGGCTGCATCCTTCAAGGCCTTTCAACATGTTAAAGTTGACACTCTGTGCCAGCCTGAGGCTGTGTCCACTGTTGCTGTGCCAGcggCCTGGTGCAGCCTGAgcagagactgatgggggtggggACGCATCGCCTAAGTCCACAACACCCCCATCCTTAGCTCCCACATACCCCCTTTACCTCACTCTCACCCCCacaatccctctttctctcttttgtaAGTACATGTTTACACAGTGTCTGTTTGATATTGAGACTAAATGGAAGGCATCAATTGCAGTGAATATTAAACAGTGCATTAAAGCGAGATTACCGCCATCCAATGCATTTGTTCATTGTATCGTTCACCCTCAAGTCATTGTAGAAATGAGGTGAACAGTTAACCTGCTTTTGAGGCTCTAGTGCATGTCATCAATTTTGACTAAAAGACATgaacctgctgctgctgctaatgACAGAGTAATAGAGCCCTCAACATTCATCTCTATCAAGCTGTGAAGGTTCGTTTTTTTCCGTTGTGTTAAAGAGTACTTGTATGAATCAGCAATGGATATATTAGCTGTTAAAGTCTAGTAAAATTATATGAAAACATGTTCTATTATAATTATATTTGTATTGACGTCTTTAGTGGTAAAGTGCAAAATTCTTCAGAAGAAGCGGTTACAACAAAAGCAGCGAAACTTGTGGTTTTGCTGCAGACAGTTTCCCTTTTGAACAACTAATCTCAAGCCTTAAACATCAGCATGGGGTTGAGGTTATAGGATTTCCAATAATGGAGTTGCTGCAGATCCAACTTCACAGGATCTTTTTTCTCTCAGGACCTTTAGTTCTGAAGCTTCTGGGCATGTTTCTTGACCTCTACTTCACACACTCATTTTTGTGGTCTCCTTACCTTCACATTTCTCACTGATGATAATTTGTCAAGTCCATGCAGCATCTGCATACCAACCATTTGATCgcaatcagtttcatggggatgtGCATTTAGATCTTGAGTTATAGTGTTGTTTTGAACGATGTACAGTGAGCAAATTTTAGAGCAGATGGTGTTACCTATACCATAGCCTACAGAGACTGTGCATAAAGTAGAGAATAAACACATGAGCAGGACATGATCCACACATGCACAGAATCTTTAGGACCTTTAGTCGAGGGAATAAAGATCTGGGAAAAGTCAGATCCGCAGCCATGGCCTTCCCATAAACGCAGAGTAATTTGATTTTAAGCCTCTAACGCACAGCCATAAATTACAATCACAATGTTCATTGCAATTGAGCAAAAAGGAGATGTTTCACATATCAAGCAAATGATAGTAACAGAAAATATATCAGAAAGAATGTTCACCCACCAACCCAGTTGAAGAACCTCTTGTGCACATCTAGGAGCATGACCAGTTTGTCCAACTCCAACAACCTGAAATCAACATGATCCAACAGACCCAGTCGAAAAGCACAATGTAAATCAATGAGATATAGCGATTACATATATTTAAAGTATGAGTGTATTACAAATTCTCAATAAAAGTGTTTTATCTATAAACAATAATGTATGAATCACTCATCTTGATCTACCTTTAGAGGGTGGAATCTTTCACCCACTTCTCCATTTAATTTCTTAGTTTGTCCTGTAAGCACATGCTGGTGGCAAGCTTGTCCTTAACCAATTGGGGGATATCAAACCCTCACTCCCCAGGATAAGATTATCATCTTAGATAATTACATGTAAGTAATAACTAAGACTGTCCTTGTTCACTGTAAAAATACAACTTTATTTACTTGGCTTTGATCATAACTAGGACCACCACTGAAATGAAAATCGCACATGTTCAGTTCCATCTCTGGTGCTAAGCCACATTGCGCTTTTCTTTGAGAGAACCCTGGACTTCTCCATGTTAATACACCCGTGATATTAATAAATAGCACGCCTTGGGCTTCATATTAGCCTCAGCATCAGTATTACAGAGCAAGAGCATGGCTCCCTTGTTGACATAGACTTATGTGGGGAAATTCTACTGGAAAGGTTTTCTATCCGTAGCTTCCGTTGGGTTCTGTATGAACAGGTCAGAGCCAGTCAGAAAATGCCAATTCTATTTCTGTAACATTCCTGGCTGTTCCCTAAACTGTGCAACCAAATATTTTCCCCATCTCTTGAGTGCATGTTAAAATGAATGTCCAGTAACTTATTTAATGTAGAATTTAGCCATGCTACTTTCACTGGGTTTTGTGGATTTCTTATTTGTCTTTTATAGTATTCCTATAAAAAAGGACAgacaaaacaaatatatatatatatatatatgaatagaaAATGGCATACAGAATGAATATTCACTTTTATGGCAGTGTTTGGAGAAATGCTAATTCTTATACTTATGTATGTTTCAGTAAAATGGCTTTCTCTCTGAGTGTAGAGACTTATTGCAGGGATGCAAGTACCATATTTAGTCTTAAAACTGTTGAAATTCTAGATAATGTAGAATGATAAAACTCAATAAAATGGAAATAAACCATGAA
>XM_021570521.2
agggagggattgcCCCCATAACGCTCAACATGAACGCTCCGCGGCAAAAGGATGTGTGAGCAAGCAGCGCGCTACTGCAGGGACGGTGTCCACAAACTGCTCCAAAAAGAACAACCGAAACTCCGGGCTCAGGACAGCAAAGAACAACCAAAACCCGTGGCCGAGGAAAGCGAGTCAGCGACGGCTGCACAGTCTGGAAACAGCGGCGCCCAGCCCGGTGGAATTGACGGGCTCGTCCGCTGGATAGTCACCAAGATGAGCGACAACAAAAGCATCTCTACCCGGGAATACGCGAAGGAGGAGGCAGCGGTTGCCCAAGAGCAGTTCTTCGCACCAGAGCCACGGAAAGGCATCTCTGTAATATTGGATATTTTCCGGAGAGCTGATAAGGATGATGATGGGAAGCTATCTCTGGACGAGTTCCAGGCATTCTTCTCCGACGGGACGCTGAACGAGGAAGAACTGGAGAATCTGTTTCACACAATTGACTCTGATAACACCAGTAATGTTGACACTAAGGAACTCTGTGACTACTTTGCCAAACACATGGGTGACTATGAGGGTGTACTGGCCTCCCTGGAGACTCTCAACCTGTCCATCCTCAGAGCCATGGACTTCACCAAAAAGGTGTATGAACGAGGGACCAATGTGGAGCAATTTGTTACCCGCTTCCTGTTGAAGGAATCAGCCAATCAGATCCATTCTCTGCTGAACTCGGTGGAGAGTGCTGTGGACGCTATTGACGAGCAGCACTGTAGTCAGTCAGGGTACCCTTCTAAGGTCAGTCAACAGGTTCCAGAGAAATGTTATGAGAACCCAGTGCCTGACTACCCTCCTAACAACAGAGTCAGTGCTGCCAAGGATGCTGCCCCAAGGAACATCAACACTGCTACAGGGGTGGTGGAGGTAAGGAAAGAGACGCTGGAGGCACAGATCAACCGACTAGCTGAGCTAATTGGACGCCTTGAGAACAAGTCTCTGTACCTGATTCGTCAGGAAATGACGGTATCCCAGAAGCAGCTGGGAGAATTCTGTGAGGCCCTGAAGCAGTAcctgaagaatgtctctgctgaaAGAGACTGCTTCCATGTGACTGCAGTGCGGCTGCCAGATGGGCTCTCCTTCGTGGTGTATGAGTtctgggatggagaggaggagtggaaaaAGCACCTCCAGGCTGCATCCTTCAAGGCCTTTCAACATGTTAAAGTTGACACTCTGTGCCAGCCTGAGGCTGTGTCCACTGTTGCTGTGCCAGcggCCTGGTGCAGCCTGAgcagagactgatgggggtggggACGCATCGCCTAAGTCCACAACACCCCCATCCTTAGCTCCCACATACCCCCTTTACCTCACTCTCACCCCCacaatccctctttctctcttttgtaAGTACATGTTTACACAGTGTCTGTTTGATATTGAGACTAAATGGAAGGCATCAATTGCAGTGAATATTAAACAGTGCATTAAAGCGAGATTACCGCCATCCAATGCATTTGTTCATTGTATCGTTCACCCTCAAGTCATTGTAGAAATGAGGTGAACAGTTAACCTGCTTTTGAGGCTCTAGTGCATGTCATCAATTTTGACTAAAAGACATgaacctgctgctgctgctaatgACAGAGTAATAGAGCCCTCAACATTCATCTCTATCAAGCTGTGAAGGTTCGTTTTTTTCCGTTGTGTTAAAGAGTACTTGTATGAATCAGCAATGGATATATTAGCTGTTAAAGTCTAGTAAAATTATATGAAAACATGTTCTATTATAATTATATTTGTATTGACGTCTTTAGTGGTAAAGTGCAAAATTCTTCAGAAGAAGCGGTTACAACAAAAGCAGCGAAACTTGTGGTTTTGCTGCAGACAGTTTCCCTTTTGAACAACTAATCTCAAGCCTTAAACATCAGCATGGGGTTGAGGTTATAGGATTTCCAATAATGGAGTTGCTGCAGATCCAACTTCACAGGATCTTTTTTCTCTCAGGACCTTTAGTTCTGAAGCTTCTGGGCATGTTTCTTGACCTCTACTTCACACACTCATTTTTGTGGTCTCCTTACCTTCACATTTCTCACTGATGATAATTTGTCAAGTCCATGCAGCATCTGCATACCAACCATTTGATCgcaatcagtttcatggggatgtGCATTTAGATCTTGAGTTATAGTGTTGTTTTGAACGATGTACAGTGAGCAAATTTTAGAGCAGATGGTGTTACCTATACCATAGCCTACAGAGACTGTGCATAAAGTAGAGAATAAACACATGAGCAGGACATGATCCACACATGCACAGAATCTTTAGGACCTTTAGTCGAGGGAATAAAGATCTGGGAAAAGTCAGATCCGCAGCCATGGCCTTCCCATAAACGCAGAGTAATTTGATTTTAAGCCTCTAACGCACAGCCATAAATTACAATCACAATGTTCATTGCAATTGAGCAAAAAGGAGATGTTTCACATATCAAGCAAATGATAGTAACAGAAAATATATCAGAAAGAATGTTCACCCACCAACCCAGTTGAAGAACCTCTTGTGCACATCTAGGAGCATGACCAGTTTGTCCAACTCCAACAACCTGAAATCAACATGATCCAACAGACCCAGTCGAAAAGCACAATGTAAATCAATGAGATATAGCGATTACATATATTTAAAGTATGAGTGTATTACAAATTCTCAATAAAAGTGTTTTATCTATAAACAATAATGTATGAATCACTCATCTTGATCTACCTTTAGAGGGTGGAATCTTTCACCCACTTCTCCATTTAATTTCTTAGTTTGTCCTGTAAGCACATGCTGGTGGCAAGCTTGTCCTTAACCAATTGGGGGATATCAAACCCTCACTCCCCAGGATAAGATTATCATCTTAGATAATTACATGTAAGTAATAACTAAGACTGTCCTTGTTCACTGTAAAAATACAACTTTATTTACTTGGCTTTGATCATAACTAGGACCACCACTGAAATGAAAATCGCACATGTTCAGTTCCATCTCTGGTGCTAAGCCACATTGCGCTTTTCTTTGAGAGAACCCTGGACTTCTCCATGTTAATACACCCGTGATATTAATAAATAGCACGCCTTGGGCTTCATATTAGCCTCAGCATCAGTATTACAGAGCAAGAGCATGGCTCCCTTGTTGACATAGACTTATGTGGGGAAATTCTACTGGAAAGGTTTTCTATCCGTAGCTTCCGTTGGGTTCTGTATGAACAGGTCAGAGCCAGTCAGAAAATGCCAATTCTATTTCTGTAACATTCCTGGCTGTTCCCTAAACTGTGCAACCAAATATTTTCCCCATCTCTTGAGTGCATGTTAAAATGAATGTCCAGTAACTTATTTAATGTAGAATTTAGCCATGCTACTTTCACTGGGTTTTGTGGATTTCTTATTTGTCTTTTATAGTATTCCTATAAAAAAGGACAgacaaaacaaatatatatatatatatatatgaatagaaAATGGCATACAGAATGAATATTCACTTTTATGGCAGTGTTTGGAGAAATGCTAATTCTTATACTTATGTATGTTTCAGTAAAATGGCTTTCTCTCTGAGTGTAGAGACTTATTGCAGGGATGCAAGTACCATATTTAGTCTTAAAACTGTTGAAATTCTAGATAATGTAGAATGATAAAACTCAATAAAATGGAAATAAACCATGAA

Function

NR:

description
N-terminal EF-hand calcium-binding protein 2 isoform X2

GO: NA

KEGG:

id description
K23854 NECAB; N-terminal EF-hand calcium-binding protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021570520.2 False 3744 mRNA 0.43 13 70402638 70546729
XM_021570521.2 True 3687 mRNA 0.43 12 70402638 70546729

Neighbor

gene id symbol gene type direction distance location
LOC110495034 LOC106560827 coding downstream 192326 70182496 ~ 70210312 (-)
LOC118937291 NA coding downstream 225995 70174916 ~ 70176643 (-)
zgc:158868 LOC106560829 coding downstream 287538 70112555 ~ 70115100 (-)
LOC118941470 LOC106560829 coding downstream 290933 70109177 ~ 70111705 (-)
LOC110494967 LOC106560830 coding downstream 327013 69995090 ~ 70075625 (-)
LOC110501848 NA coding upstream 5534 70552263 ~ 70642587 (-)
chka LOC106560813 coding upstream 166460 70713189 ~ 70733880 (-)
kmt5b LOC106560809 coding upstream 187448 70734177 ~ 70741635 (-)
arpin arpin coding upstream 218816 70765545 ~ 70768009 (-)
fam169b fam169b coding upstream 222411 70769140 ~ 70773282 (-)
G178485 NA non-coding downstream 13053 70389273 ~ 70389585 (-)
G178484 NA non-coding downstream 13736 70386034 ~ 70388902 (-)
G178483 NA non-coding downstream 16835 70385137 ~ 70385803 (-)
G178482 NA non-coding downstream 17524 70384774 ~ 70385114 (-)
G178476 NA non-coding downstream 31262 70371115 ~ 70371376 (-)
G179139 NA non-coding upstream 138187 70684916 ~ 70685225 (-)
G179134 NA non-coding upstream 142524 70689253 ~ 70690634 (-)
G179141 NA non-coding upstream 144861 70691590 ~ 70691865 (-)
G179178 NA non-coding upstream 231707 70778436 ~ 70778692 (-)
G179233 NA non-coding upstream 295591 70842320 ~ 70842577 (-)
LOC110494902 LOC106560839 other downstream 698239 69648833 ~ 69767366 (-)
G177487 NA other downstream 810916 69591135 ~ 69591722 (-)
G174505 NA other downstream 3709788 66692408 ~ 66692850 (-)
G173696 LOC106560906 other downstream 4011872 66375226 ~ 66390766 (-)
G173675 NA other downstream 4064252 66335412 ~ 66338386 (-)
G179215 NA other upstream 358643 70905372 ~ 70906254 (-)
ttc23 ttc23 other upstream 379961 70926632 ~ 70945359 (-)
G179310 mef2a other upstream 451316 70998045 ~ 71070204 (-)

Expression


Co-expression Network