LOC110501848


Basic Information

Item Value
gene id LOC110501848
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 70552263 ~ 70642587 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110501848
ATGAGGCGCCTCCTGATGGTTCGACTGGGGGGCAGAagattccagtacctggttgactccGAGGGTTATGgcctggaggagagGGTGGCGTGGACCAATCTAGACTTCCCTTACCAGCTGCACCTCTCTCTGTGCCCTGTGAAGTGCTCCTCACTGCCGACCCTGCTAGTGCGCAACATTGGTTCATGCCTTTGTTCTGTCAAGCCCTTTCTCATTGATGTTAGTGAGAGCATGCAGGTGAGGGTGGACTTCCTTCCCAAGACTGAAGGAGACCACAACGAGGACCTGCTGCTTCACTACCACTCCGGGGAGGATGTTTACATCAGTCTGTGTGGAGTGTCTACAGACGTGAATGTGAGGCTGGCTAGGAACTCTGTCATAGTGGAGACAACCTACATTTCCATGGCCAACCAAAGCTCAGTCTCCATAGTGAACAGGAGTGATACTATAGTCCACTATCAGTGGAAGAGATGTGCcactgaacaggaggaggagcagcagaagCTAAGGTTCTGTTCCGAGCTGCAgcgggaagaggaggatgagatggATCAGTTCCTGACAGAGTGTGACGAGGGGGACATTTGACCAAACACCACCTCAGATGTCAACATCATTTTCAAACCACAGGAAGCCAAGATCTATTAGCAGATGgtctactttgacattacagGCCGTGAGTCTCGCCTACCTCTATGAATAAAGGGGGAGGGCGTAGGCCCCAAATTGCAATTCAAATTTGACTTCCTTGACATGGGTAACATCTTTATTGCCTCCAAGCACAGCTATGAGCTGCTTCTATCCAATAAGGGTCTCATTGAGAGCGTGGCAGGCCCCAAGGGCGCCTTTAACCTGGTTCCTCCCGGCTCAGCGTTTGTCCAGTGTTTCTCCTTCAGCCCCACTAAGAGGATGGTTCcccCTGGGGCCTGTCACACTCTGGAGGTCTGCTTCTCCTCCAGCACCCTCGGGGTCTTCACTGAGGAGTTACTCTTCACCGTGGGGGATACCCTCCCTCACCCCATCACtatttatttgaggGGTTGTATAATGGACCCCACGTTTCACTTCAACGTCTCGGAGCTCAACTTTGAGGATGTGTCCTTCGGAACCATGCGTCCTCAGGGACTTGTTGACATCAAGGTGACCCTGTGCTCCAACAGTGTGCAGCGCTACAGCCTGGCTCTAGTGTTGGATGCAcaaggagtgggagaggaggtgcTGGCCCTACCCATCAATGCCAGGTTAGAGATCTACACCCAGGGTCAAAATACACCTCTTACAAACCTGCTCCTGTCCTGCATTGGGGAGGATGCGGTTGTCCATGTGATGACCACAGAGGTGGACTTTGGCACCATATCGGTTCTGACCGATGTCTCCAGAACATCGCAGCTCTCAAACCAGTCCCTGATACCAGCCCGCTTTGTGGCACAAATGGTTCGCAGCAGGTGGCGGGTGGAGCCCAGTGAGGGAGAGGTTCCACCCCAGGGGAAGCTGGAGCTGAGGCTGGTCCCTCACCTAGAtgacaatcaatcaaatagggtgcactTCCAGGACAAGCTGTACCTCTCCATCCAGGATAATGAAACACACCATCCTTCTCTCTGCCAATGGCAAGGGCACTACCATTGTCACCAACCGTCCTTTTGTCCCCAGTCTGGACCTGGGGGCACATTTCAGCTCTGGTCCATATCAGTACTGTTTTAGAGTGACCAACTGAGGTCAGCCCTCCCACCAGCTTTACTGGAACACAGAGGGGTACccccagagcccccccccccccccccgcccaccaACACAACCAGGGAGGAAAAGAGTTGCAACTCCCTGGTTCCCCCAGCAGTAGATGGGCCGTTCTTCAGACTGCATCCCAAACGCATGGAGCTCGCCACGAGACACACTGCTGACATGTTGCTGGAGGGCTTCTCTGACTCTCCCAAGGTGGGAACATAGAGGCTGGTGTGTCACGCCATGCTAGGTCACCAGAGTGGGAAGGAGCTCAGCACCTGTCTTGGACATCTCCTCCCAGCAGCTCAGCTTCttagtggagaaggtacaTTGTTTGACCATCTGGCCGAGGTAAAAATCATCATGAGGAACACAAGGAAGGTGGGCTTTGAGTTCAGTGCTCTGTTGGGGGACCAGGATGAGTGTGGGGACTCTCGGCCTGGACatcccctggtcatccctagAACGTGCTACACCGAGGCGAAGGCTGAGCGGAAGCTGTCATTGTACTATCTCCCTGGGATCCCTTAGGTTTTCCACAAGACTGCAGGAGGCTTTGTGTGAGCCAGAGAGCATCACTCTCAGAGGAGAGGGCATTTTCCCCAGGATGTGTCTGGACCCAATGGTGAAGGAGTCCACGGAGGccctggaggaggacaggagagataaAGGCACCACTCGGCCAACCACTGGAGAGGGCCTCCTGTCTGACGAGGACTACATCCCTACACATGATTCCCTGCTgcagatggaggtagagaggctCTTGGTGAAACAGAATGCCATGGCTATTGAGAAGAGACAAGTGGACCATAGGGACACACCTGCGTCCACTAGAAAGGGGCGTAAGAAGCTTGGCAGTCTCATGTTGATGGAGTACACAGTGGATTTTGGCTATGTGATCCAGGGTAGTGTTTCTACTCACATAGTTAGTCAAAGTGACAAACACATGTCTGTTTCCTTCTGGGCTGACCGCCGACCGCTTACAGGCACAAGGGGGTTCCTGGGCAGCATTTGGAATGAATGTAGATAGATAATGCTATATGTGGATGGTTTTGATCCAGAGCTGTCTCCTATCCTCAGGGTGAAGAACCTGCCCTATTGTAAGAATGAGACTTCTGAGGTGAAGTTTGAGCCTATCTGGATCTGAGGGAGATCAGCACCGTCATGCCTATACAGATAGTTGGGGGCCTTACAGTCCAGATCCGTCTGTGTGCCGTAGTCACCATATCCGCCGTCTCAACCTCCACGGATATGCTGCAGTTTGACAGCCTCCAGTGTGGACTGTTTCAGGTGACCACTGTCCAGCTGTTCAACCACGAGCCTGTCCCCTGTGAGTGGAGTATCACAGAAGAGCAACAGCCCAAGGAGAAGATTGACAAGCATGTCCCCCTCCACCTGAGATGGAAGGCCAGATTGGAGCAACATCCTCCCCCAAGTGTGTTTGAGATGCTTCCTTCAACAGGCGTGCTGTATCATGGAGACAGTCAACATCCAGGTCAAAGTCAGCCCAGCTGAGGAGAGGGTGTACAGCCAGAGGCTGGTGGTGTCAGTGGCCCAAAGCACCCAGAAGATGCTGCTGCTGGCCAGGGGCAGGGAGAGGAGCACCAGCTGGAGTTATCCTCATCTGTGCTGGAGCTGGGACCCACCCTCCCATTCAGTGCTGGAGAGGAGACTGACGTGATCATATGGAACCCTTGCCTCTTTCCCATCGAGTTCTAATCCCGGGAGTTTGACAAGAAATACCAGGAGGAAGAGAAGGTGAAATCATTTGACTaTTCTGCGTATGATGACCAGAATTTCCTGCTGATGCCCCCACGCGCCCCAGGAGAGTCACTAACTCCTGAGCTAATCGACTATTATAATGACCACAACTGTGAGGAGGAGGACGACTCCAAGGCTGGCTCCTCTAAAGATGAGGAGGCGTCTGAagcaggggagaagggagagccGGAGGAGGAGCTGGCCACCCCACCCCTTCCAGAACAACTCATGGAGGAAAAAAAAAAggcagctccctccaaagatgagACGTCATGTGGAGACCTGATCAAAGCCACAGTGGACAGCAGGACTGCCAGTGTGGGGGACCTGGAGGTCAACCCAGTGTCCAGAGCTATCGCCCACCACATGGTCATTGACCTGTCACCTGAGGGCCAGGCTACACGAAACCGCCGAACATCGCAGTCATTGTGCATGGGGCTCCCCTCTCAGGAAAGCAGCGCACAACAGTGACTCTTGACAAACACTAAGGTGCAGCATGTCTAAGCATTGATCCTGTGGTGCTGGTTGCATTGTCCTCAGGGATGACCTCTGCTAACCTGCAGGCCCACAAGCTGTGTGCCAAGGCTGCCATTGAGCATGCTCAGAAGAGGGTGGAGGAGGCTGTGGTGGAGGTGATGGGGCCTGCTGGTCAGGGTGCTGGTACTCTGAGTGTGGAGGCTATAGCCAAACACCCTGCTGAGGGCAGTCAAGTCAACGACCCCCATCCATCTCCACCAGTAACAAGAACAGTGTTGTGGGGTGGTGTTCCTATCCACCAGCAGCTGAGCATCAATCCAGACCAACTGCTGATGGGCAACCTCTCAGAGAGACCACAGCTGAGTGACTGTCACCGGGGTGTTGTGATGGACGGGATGGAGACGCTGTACTGCCGCTCCCCCAGCAGCACCCTATAGATCACCAAGGCTTCATCTACATGGTCAACCTCTCAATCAACTACTACGTCTTCAAAGCCAAGGAGAtggcacagagagaggcagagggtgaGGACAAACTAGTCCAAAGGAGACTCCCTCCTATCCCCTCCTCCACTATTTCCTCTGTCATACTCTACACTAAGAACAGGCCTGTGCCCAGTGCACAGCAGATCACTAGTTGCTTCCCCTTTATGGAAGAGGTGTTGACCTCTACTGAAGGACGGGGGAAGAAGGCAGACACGggcagagagaAACACACAAGAATAAACACTGATGTGCATGAATGTGACTTAAAGGTTTGTGTTGTTTTCTATAGGCTCACCACATTCCACTGGAATGTCCCGCCCTATGGAGAGGCGATCCTGAAGATCTGGTTCCACTCCCAAGTCCCTGTCAAGTTTGACAAAACACTGAACTTTGAGTTGTTGGGTACCAAGATATGTTTCAAAATGTACTGTGGGGGAATCTGTACATATCTATCCATCAGCAGAAACACAAAGATGGTATTTGCCCACAGGAAGAGAGTCCTTTGCTGAAGCGTTGCAGAAGAGCTACATCATCCGCTCTGGCCTCTATGAGTTTGGCCCACTGCTCTGTTGCAAGACCACAGATAGGTATAAAGAGAGGAAGTATCCAGAGAACATGGAAAGGCTGGTGATACACAACAACACCCCACTGGATGCTGAGATTCATTTCTTCTTCCAGCATGACACCAAGGCTGCCACCTACCAACTGGACCCTCCCAACATCCCAACGAGAGACAAGAAGCCAATCAGAACTACTCATGACATCATAGAATGTAGTCTGAGATGTCGGATTAGTCAGAACCCTGACTGTGTGACACAAACTTACCTAGAAGTTATGACTGTTCACGTGGTCCACCTCTATGTAGACTGTGCCAAGGAGGTGACCGTGGCCTTCTGCTCAGAGCCGCCCGTAGTACTGACTGCCCAGCCTATCAAGTGTAAGCTGTGCAGGGTGGTGTTCCAGCAGGTGGTGGACCAGGTGCCAGACTGGGACGACCGCCTCAGGACCATCATGTGGGTTGAGTCTGGGAAACAGGGAGGATATTTGCTGACTACTCTGGTCAAATGCTACACCACGCCCACGGACGTCAGTTTCTCCACAatcagtctggatctgagtacctccccaaTGATTTCTGGAATAGGAGAGACCATCCACTTCAAAGGACACACTGCTCTATCAGACCAGGCTCACCAAACAGTGTATCTGGTGAATAGGGAGAATCAGCCCTTCCAGTTTATCATTGAAGAATTGTCTTGCCACTCAGAAGCCTTTCTGGACAGCCTGCAGCTGGAGCCTATGGAAGGGGTAGTGCCACCTGAAGACAGGTTTCCTGTGGTAGTGTCCTTCACCCCAACACAAGATGGAGTGGTGATCTTTAACCTGCTAGTTCAGGTGAAGGTCCAGCCCCTCACTATGAATGTCAAGACAAAGGGCGATAGCATGAACGCCTGCCTGTATGCAGTGTGAGAGCACCGAGGGAGGCGTCGCTGAGCTGTCCCCAGGCAACTCTCCTCATCAGGTGGACTTCAAACGGGGGAGAAATGTGGGCTTCAAAAAGTGTGTGCTCAAAGACATGGGCCTCAACATCAAGGCGGGGTTCCAGACGGAAGTGCTGCCCCCTGGAGGGTTCATGGCGGTGCCCATCACCTTCTACCCATAGGAGGCAGTGCAATACCATGAGCGAGTGGTCTTTGAGATCAATGACAGTGTCGAGCAGGTGGTCGAGACCCTAGGTCAATGAATTGAGATGAAGGTTGACTTTGAGGACCCCAGACACAAGGTGGTGAATCTGGGGGCTCTGCAGATTGGTCAGAAGATCAGGAAGGTGATTCCCCTGGTGAACAACAGCCACTCCTCTCTGACCTCTCCCTTCTGCTCAGCTCCACTGTACACACTCTACGTGTATTTCTCTCCTGTACCGTCGGTGCTGTCAGTGAACCCGCCAGGTGAGGTGACCCTGAAGCCTTTTGGGGGCCTCTGTCTGGTGGAGGTGCTATTCTCTCCCAGGTAGCACATGGCTCCCTTCACCTCAGAGCTGCAACTTGAGTATCTGGGCACGGTACGCCCCCTGCTGGTGCTGAATGGCTGCTGTCATGGCATGGAGGTCAAGCTGGACCAGGACTACCTGCCCTTTGGAGCTGTTGCTCAGCGCTGCAAGGCCATAAAACGCATCATGCGGAACACTGGAGAAATTGGAGCCAGGTAGTTCCAGTGGGATATGAAGAGGTTTGGCAGAGACTTCACCCCTGCAGAGGGCTACATATGCCCTGGGATGGAGGTTCCCTTTGAGGTGGCCTTTGCCCCTGTGGAGCTGAGTCAGGACCTGAGATATGATGACCTGCCCTACACCGTAGAGAGAGCCATCAAATTCACCCTGGCAGGCTCCTGAATCATGCCCCCCATCATTGACCTTGTCCTACTTCACAAATCAGCGCTGGACTCTGAAGCCTGTGATCGAGGGGGAACACTGGAGTGGCCCTCCTCCTTCATCATTGATCCCTACCAGCAGCACAAGGCTTATGAGATCACATACAAACCCATGGTCTTGACCCCAGATGGCAAGAAGCACCTGgACTCTGTGTTCTTCTTCCCAGATGTGACAGGCATACTCTACACTCTGCATGGCACTTCTGAGGCCCTCAAAGCTGTGGTCGTACACTGAGACAGGGCCTGTCCACAACTGGCACTCCAACCCTCagcagtaccacactactacttTAGCAGGATGTCTATCAGCTGTTTAACACCTTGTAGTGCCACTGCTTCTACCTCTgtcacactacactacatcaccacaacTTTGTCAGCTGCCAGTACTAAAATGTTCTGTGTGCTGGTTCCTTGCTGTGGTGGAGATCATCAAGCACTGTGTCCCTGAAGGGCCTGGACTATCTGGATGTACCAGCTCTGGCCAAGAGGGACTACATGGTCTTCTTCTTCGCCTACAAGGAGGGCCAATGCAATGCAAACGTCAGTGGAGAGAATCTGCTCATGTAGATGTACAATATAAATGCATACTGACCATCTTCAGAGTACCTGTTCTCCTACCTAAACTACAAGGCCACAGAGACGGGTATCATCAGCACAATAGATATGGTGACTCCGGTGCGCCAGACAGCCTCTGCCTCTGTGAGAATGGAGAACCTCATTAGCCTGTACTTCAGTGCTGAGTGCCGCAGTCCAGATGTCAGTGTCTCCACAAGTATTGTGCCTGCATTCTCCAAGTCTAGATCCATGTGTTCTTCTCAGAGCCACTAGGGAGAGCACTTGCTCCTCTCCAAATAGCACTCATTTGGCATCAGCACCAGATACTGTACCTCCTGGGTTCATTTGTGGGAACAGGATGGGTGTTCAGAATGCATGAAATATATGTTTCCAATTAGCATAAACAGCAGTTCAATAGTGTGTTTGGTGAATAGTtggaagtgtgtgtgagagacagggtGCAAGCAGTGAGTGAGCAGGATGAGGGCCTGTGTTTTGGGAAAGGTAACTATTAAAATGTT
>TU202994
ATATAAACCTCTCTGTTATTGGGAGGGACTATCCTAGTGGAACAGAGACCCTGAAAAGCAACATACTTGAAGAGTCTCTTGAAGTCTCTTGAAGAGGGCTTGGACTCAAAAGCCCTCCTATCCCCTCCTCCACTATTTCCTCTGTCATACTCTACACTAAGAACAGGCCTGTGCCCAGTGCACAGCAGATCACTAGTTGCTTCCCCTTTATGGTGCCC

Function

NR:

description
PREDICTED: hydrocephalus-inducing protein homolog isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110501848 False 7960 mRNA 0.48 50 70552263 70642587
TU202994 True 218 TUCP 0.48 2 70560522 70560855

Neighbor

gene id symbol gene type direction distance location
LOC110495228 LOC106560819 coding downstream 5534 70402638 ~ 70546729 (-)
LOC118944152 NA coding downstream 11654 70540554 ~ 70540609 (-)
LOC110495034 LOC106560827 coding downstream 341951 70182496 ~ 70210312 (-)
LOC118937291 NA coding downstream 375620 70174916 ~ 70176643 (-)
zgc:158868 LOC106560829 coding downstream 437163 70112555 ~ 70115100 (-)
chka LOC106560813 coding upstream 70602 70713189 ~ 70733880 (-)
kmt5b LOC106560809 coding upstream 91590 70734177 ~ 70741635 (-)
arpin arpin coding upstream 122958 70765545 ~ 70768009 (-)
fam169b fam169b coding upstream 126553 70769140 ~ 70773282 (-)
LOC118941475 NA coding upstream 131305 70773892 ~ 70775981 (-)
G178485 NA non-coding downstream 162678 70389273 ~ 70389585 (-)
G178484 NA non-coding downstream 163361 70386034 ~ 70388902 (-)
G178483 NA non-coding downstream 166460 70385137 ~ 70385803 (-)
G178482 NA non-coding downstream 167149 70384774 ~ 70385114 (-)
G178476 NA non-coding downstream 180887 70371115 ~ 70371376 (-)
G179139 NA non-coding upstream 42329 70684916 ~ 70685225 (-)
G179134 NA non-coding upstream 46666 70689253 ~ 70690634 (-)
G179141 NA non-coding upstream 49003 70691590 ~ 70691865 (-)
G179178 NA non-coding upstream 135849 70778436 ~ 70778692 (-)
G179233 NA non-coding upstream 199733 70842320 ~ 70842577 (-)
LOC110494902 LOC106560839 other downstream 847864 69648833 ~ 69767366 (-)
G177487 NA other downstream 960541 69591135 ~ 69591722 (-)
G174505 NA other downstream 3859413 66692408 ~ 66692850 (-)
G173696 LOC106560906 other downstream 4161497 66375226 ~ 66390766 (-)
G173675 NA other downstream 4213877 66335412 ~ 66338386 (-)
G179215 NA other upstream 262785 70905372 ~ 70906254 (-)
ttc23 ttc23 other upstream 284103 70926632 ~ 70945359 (-)
G179310 mef2a other upstream 355458 70998045 ~ 71070204 (-)
LOC110495479 mctp2 other upstream 491947 71134265 ~ 71164057 (-)

Expression


Co-expression Network