Gene
RNA
| Item | Value |
|---|---|
| gene id | XLOC_020685 |
| gene name | si:ch1073-15f12.3 |
| gene type | coding |
| species | zebrafish (Danio rerio) |
| category of species | model fish |
| Item | Value |
|---|---|
| chromosome id | NC_007133.7 |
| NCBI id | CM002906.2 |
| chromosome length | 39133080 |
| location | 1073413 ~ 1079773 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| symbol | description |
|---|---|
| si:ch1073-15f12.3 | Predicted to be an extracellular matrix structural constituent. Predicted to be involved in several processes, including animal organ development; axon guidance; and blood vessel morphogenesis. Predicted to be active in basement membrane. Human ortholog(s) of this gene implicated in amelogenesis imperfecta type 1A; junctional epidermolysis bullosa; junctional epidermolysis bullosa Herlitz type; junctional epidermolysis bullosa non-Herlitz type; and lung small cell carcinoma. Orthologous to human LAMB3 (laminin subunit beta 3). |
| id | name | namespace |
|---|---|---|
| GO:0043010 | camera-type eye development | biological_process |
| GO:0048514 | blood vessel morphogenesis | biological_process |
| GO:0009887 | animal organ morphogenesis | biological_process |
| GO:0009888 | tissue development | biological_process |
| GO:0007411 | axon guidance | biological_process |
| GO:0005604 | basement membrane | cellular_component |
| GO:0005201 | extracellular matrix structural constituent | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-081104-69 | Predicted to be an extracellular matrix structural constituent. Predicted to be involved in several processes, including animal organ development; axon guidance; and blood vessel morphogenesis. Predicted to be active in basement membrane. Human ortholog(s) of this gene implicated in amelogenesis imperfecta type 1A; junctional epidermolysis bullosa; junctional epidermolysis bullosa Herlitz type; junctional epidermolysis bullosa non-Herlitz type; and lung small cell carcinoma. Orthologous to human LAMB3 (laminin subunit beta 3). |
| ensembl_id | ENSDARG00000059369 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TCONS_00040894 | True | 918 | mRNA | 0.53 | 6 | 1073413 | 1079773 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| XLOC_020684 | NA | coding | downstream | 49882 | 1018345 ~ 1023531 (-) |
| XLOC_020683 | cacna1sa | coding | downstream | 104929 | 912450 ~ 968484 (-) |
| XLOC_020682 | KCTD20 | coding | downstream | 162487 | 898131 ~ 910926 (-) |
| XLOC_020681 | cept1b | coding | downstream | 191688 | 866681 ~ 881725 (-) |
| XLOC_020680 | dram2b | coding | downstream | 207217 | 856869 ~ 866196 (-) |
| XLOC_020686 | NA | coding | upstream | 76657 | 1156430 ~ 1168291 (-) |
| XLOC_020687 | NA | coding | upstream | 102311 | 1182084 ~ 1182479 (-) |
| XLOC_020688 | ampd2a | coding | upstream | 126014 | 1205787 ~ 1245226 (-) |
| XLOC_020689 | CU570769.4 | coding | upstream | 150133 | 1229906 ~ 1230022 (-) |
| XLOC_020690 | NA | coding | upstream | 181177 | 1260950 ~ 1269440 (-) |
| XLOC_020676 | NA | non-coding | downstream | 312527 | 739300 ~ 760886 (-) |
| XLOC_020675 | NA | non-coding | downstream | 338169 | 733244 ~ 735244 (-) |
| XLOC_020673 | NA | non-coding | downstream | 368506 | 700213 ~ 704907 (-) |
| XLOC_020672 | NA | non-coding | downstream | 375909 | 659917 ~ 697504 (-) |
| XLOC_020691 | NA | non-coding | upstream | 187218 | 1266991 ~ 1290856 (-) |
